Alosa sapidissima (American shad): 121711417
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Entry
121711417 CDS
T11137
Symbol
vps18
Name
(RefSeq) vacuolar protein sorting-associated protein 18 homolog
KO
K20181
vacuolar protein sorting-associated protein 18
Organism
asad Alosa sapidissima (American shad)
Pathway
asad04140
Autophagy - animal
asad04148
Efferocytosis
asad05132
Salmonella infection
Brite
KEGG Orthology (KO) [BR:
asad00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
121711417 (vps18)
04148 Efferocytosis
121711417 (vps18)
09160 Human Diseases
09171 Infectious disease: bacterial
05132 Salmonella infection
121711417 (vps18)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
asad04131
]
121711417 (vps18)
Membrane trafficking [BR:
asad04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
121711417 (vps18)
Hops complex
121711417 (vps18)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-GeneID:
121711417
NCBI-ProteinID:
XP_041950954
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Position
6:complement(3035474..3046186)
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AA seq
978 aa
AA seq
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MASILDEYEDSQNIRHPVHSHNRLPATNIGITHSGFVNVRLEEEKPIFNKQRIDFSPPEK
INHFAVCNNQLCMSLGKDTILRIDLGKPDQPNQVELGRKDDSKVHKLFLDPTGSHLVISL
TSSECVYLNRNTQKIRSLSRWRGHLIESVGWNKVLGTEVTTGPILVGTSQGIIFEAEISA
SEGSLFNTNPDQYFRQVHSLEEDGKPAPVCCLEVERGLESKYFIIATTRKRLFQFVGKVA
EGSEQQGFSSIFSQNQELLPSFQEFPVNMGYSEITFYTSKLRTCPKAFAWMMGNGVLYGQ
LDYVRLDSLLSDVEVWEYTSDIDFNFNKPISIVLTQFHFLLLLPDRVKAICTLNGQVVHE
DVFPDKFGTLKKMIKDPAGGLVWIYTEKAVFRYHIQREARDVWQMYMNMNRFDLAKEYCR
DRPECMDMVLAKEAEHCFQNKRYLESAKCYALTQNYFEEIALKFIEAKQEEALKEFLMKK
LNNLKPSEKTQITLLVTWLTELYLNRLGLLESDDSKNALLQNTRDEFRRFLSSTKHKECF
YNNRDTIYDLLASHGNVDDMVYFSVIMQDYERVISHHCQHDDYSAALEVLSKHCDEKLFY
KFSPVLMQHIPKKVVDAWIQMGNRLDPKKLIPALVNYSQMGSTQQINETIRYMEFCVYQL
EVKEEAIHNYLLSLYAKYKPDSLLWYLEQAGTQASEINYDLKYALRLCAEHGYLQACVLV
YKIMELYEEAVDLALQVDVDLAKSCADLPEDDEELRKKLWLKIARHVVQEEKDVKKAMNC
LSSCNLLKIEDILPFFPDFVTIDHFKEAICSSLEEYNQHIEELKQEMEEATESAKRIRED
ILEMRNKYGVVESQEKCATCDFPLLNRPFYLFLCGHMFHYDCLYQEVSTHLYTHEQTKLE
ELQKKLAGVTVTTKSRHRQKEDDSVSLGITHVSREQIKSDIDDIIASECVYCGERMIKSI
DKPFIDPERFEEEKSTWL
NT seq
2937 nt
NT seq
+upstream
nt +downstream
nt
atggcttctattcttgatgaatatgaagactctcagaacattcgccacccggttcattcg
cataaccgcttgccagcaaccaacattgggataactcattcgggatttgtgaatgtaagg
ttggaggaagaaaagcccatattcaacaaacaacggattgatttttcccctcctgaaaag
ataaaccattttgctgtatgcaacaatcagctttgcatgagtttgggaaaagacactatt
ctaagaattgatcttggaaaaccagatcagccgaaccaagtagagttgggccgtaaagat
gacagcaaagtgcacaaactcttcctcgatcccacaggttctcatctggtaatcagtctt
acctcaagtgaatgtgtctatttgaatagaaacacccagaagatccgaagcctctcaagg
tggaggggtcatctcattgagagtgtgggttggaacaaagtgcttggaactgaggtgaca
acagggcccattcttgtgggcaccagtcaaggcatcatctttgaagctgagatttctgcc
tctgagggtagcttgttcaacactaacccagatcagtactttagacaggtccactctctt
gaagaggatgggaaaccagcacctgtttgctgtcttgaggttgaacgtggtttggagtca
aaatacttcatcattgccactacccggaagcgcctatttcagtttgtggggaaggtagca
gagggatctgagcagcaaggtttcagttccatcttttctcaaaaccaggaactacttccc
agttttcaggagtttcctgtcaacatgggctacagtgaaattaccttttatacttccaag
ctccgcacatgtcccaaagcctttgcctggatgatgggcaatggtgtgttatatggccag
ctggactatgtcagacttgattcactccttagtgatgtcgaagtgtgggagtacacatca
gatatcgacttcaatttcaacaagcccatatccattgtgctcacccagtttcacttcttg
cttctccttccagacagagtgaaagctatttgtaccttaaatgggcaagtggtacatgag
gatgtatttccggataaatttggcaccttgaaaaagatgatcaaagacccggcaggaggg
ctggtgtggatttatacagagaaggctgtctttcgttaccacatacagagagaggcaaga
gatgtctggcagatgtatatgaacatgaacaggtttgatttggccaaagaatactgccgg
gatcgtccagagtgcatggacatggtccttgccaaagaggcagagcactgctttcagaat
aaacgttatctggaaagtgctaaatgctatgccctaacccagaactactttgaagagatt
gcacttaagtttattgaagcaaagcaagaagaagccctgaaagagttcctcatgaaaaag
ctgaacaatctgaagccaagtgagaagactcagatcactttgcttgttacctggctgacg
gagctttacctcaatcgacttgggcttcttgagtctgatgacagcaagaatgctcttctc
caaaacactcgtgatgagttcagacgctttctgagcagcaccaaacacaaagaatgtttc
tacaacaaccgagacactatctatgacctgctggctagtcatggcaatgtagatgacatg
gtgtatttctcagtcatcatgcaagactatgagagagttatttcacaccactgtcaacac
gatgactacagtgcagctttggaagttctgtcaaaacactgtgatgaaaagctgttctac
aaattctctcctgtcttaatgcagcacatacccaagaaagtggttgatgcctggatccaa
atgggaaacagacttgatcccaagaagctcattccagctctggtgaactacagtcagatg
ggaagcactcagcagataaatgaaaccattcggtacatggaattctgtgtatatcagctc
gaagtgaaggaagaagccatccacaattacttactgtccttatatgcaaaatataagcct
gactcacttttatggtacctagagcaggctggcacacaagcttcggaaatcaactatgac
ctgaaatatgctctacggttgtgtgctgaacatggatatctacaggcatgtgtccttgtc
tacaagattatggagctgtatgaagaagctgtggatttagcattgcaggtggatgtagac
ctagccaagtcctgtgcagaccttccagaggatgatgaggaattgagaaagaagctgtgg
ctgaaaatcgctcggcatgttgtgcaagaagagaaggacgtaaagaaggccatgaactgt
ctatccagctgtaacctcttaaagattgaggacatcttaccgttctttccagattttgtc
actattgaccactttaaagaggcaatatgtagttccttggaggagtataatcagcacatt
gaagagctgaaacaggagatggaagaggctacagagagtgctaaacgaatccgagaagat
attctggaaatgagaaacaagtatggtgtggttgagtcccaagagaaatgtgcaacttgt
gactttcctcttctcaaccgcccgttctacctttttctatgtggccatatgtttcactat
gactgcctctatcaggaggttagtacgcacctctacacacatgagcagaccaagctagag
gagctacagaagaagcttgcaggtgttaccgtgacaaccaagtctcgtcatcggcaaaag
gaggatgattcagtcagtttgggaattacccatgttagccgtgaacagattaagtctgat
attgatgatatcattgcatctgagtgtgtgtactgtggtgagcggatgatcaagtctatt
gataagccttttattgatccagagaggtttgaggaggagaagtcaacctggttatga
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