Alosa sapidissima (American shad): 121711542
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Entry
121711542 CDS
T11137
Symbol
papola
Name
(RefSeq) poly(A) polymerase alpha isoform X1
KO
K14376
poly(A) polymerase [EC:
2.7.7.19
]
Organism
asad Alosa sapidissima (American shad)
Pathway
asad03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
asad00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
121711542 (papola)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
asad03019
]
121711542 (papola)
Enzymes [BR:
asad01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.19 polynucleotide adenylyltransferase
121711542 (papola)
Messenger RNA biogenesis [BR:
asad03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Poly(A) addition factors
121711542 (papola)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PAP_NTPase
PAP_central
PAP_RNA-bind
NTP_transf_2
MTPAP-like_central
Motif
Other DBs
NCBI-GeneID:
121711542
NCBI-ProteinID:
XP_041951148
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All DBs
Position
6:22514420..22534564
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AA seq
738 aa
AA seq
DB search
MPFPTINQSQGVPQPTKHYGITSPISMAQPKEADLVLTQKLTEALKPFGVFEEELELQRR
ILVLGKLNSLVKEWIREISETKNLPASLIETVGGKIFTFGSYRLGVHTKGADIDALCVAP
RHVERTDFFSSFYEKLREQEEVKDLRAVEEAFVPVIKLCFDGIEIDILFARLALQTIPEN
LDLRDDSLLKNLDIRCIRSLNGCRVTDEILHLVPNIDNFRLTLRAIKLWAKRHNIYSNIL
GFLGGVSWAMLVARTCQLYPNAVAATLVHKFFLVFSKWEWPNPVLLKQPEDCNLNLPVWD
PRVTPSDRYHLMPIITPAYPQQNSTYNVSASTRAVMVDEFKQGLAITDEILQSKAEWSKL
YEAPNFFQKYKHYIVLLASAPTEKQHLEWVGLVESKIRILVGNLEKNEFITLAHVNAHSF
PGPKEGNDKEEFSTMWVIGIVFKKMEGSENLNVDLTVDIQSFTDTVYRQAISSKMFEQDM
KITAKHVKRKQLQQLLPSNVIQTRPSRRKHSTEGPRPMNDSSLDLSLDSDNSLSVPSPPS
VPAAANKINPLGSIGFTGAMITASDKMDTSGSTSPTSPVPTAPKSIQSRKGSSSSSSPPP
PMGPPAAPKASSPPPPPVSPPEDKSKKPKTEETAALASNAPSGDSPTSGVLPVKRPGSPL
PEDQSKKPKVEDEAKGQVEEEMASQGDEAMETDIKELDPEQKAPSDQRASTTDLSDVPLP
PANPIPVLKNSIKLRLSR
NT seq
2217 nt
NT seq
+upstream
nt +downstream
nt
atgcctttccctaccattaaccaatcgcaaggggtgccacagccaaccaagcactatggg
attacctcacccatcagcatggcacagccaaaggaggctgacctggtactcactcagaaa
ctcacggaggccctcaagcccttcggagtgtttgaggaagaactggagcttcagcgcaga
atcctagtgttggggaagctgaacagtttggtgaaagagtggatacgagaaatcagtgaa
acaaagaatttacctgcttcattgattgaaacagttggaggtaaaatcttcacctttggc
tcttacagattgggagttcacacaaaaggtgctgatatcgatgccctctgcgtggcacct
cggcacgtggagaggactgacttcttctcctccttctatgagaaactgagggagcaggag
gaagtgaaggatttgcgggcagtggaagaggcctttgtccctgtgatcaagctttgtttc
gatggcatagagattgacatcctatttgcaagattagcactgcaaaccattccagagaac
ctggacctacgagatgacagtttgttgaagaacttggatattcgctgcataaggagcctt
aatggttgtagagtgactgatgaaattctccacctggtccccaacattgacaacttcaga
ctcaccctcagagccatcaaactgtgggcgaaacgtcacaacatctactccaacattctg
ggatttcttggtggagtgtcctgggccatgttggtggccaggacctgtcaactatatccc
aatgctgtggctgccaccctggtccacaagttcttcctggtcttctcaaaatgggagtgg
cccaaccctgttctcttaaagcaaccagaggattgcaaccttaatcttccagtctgggac
ccaagggtgacgcccagtgaccggtaccacctcatgcccatcattaccccagcatacccc
cagcagaactccacctacaacgtttctgcctccacccgggccgtcatggtggacgagttt
aaacagggtcttgccatcacagatgaaatactgcagagtaaagcagaatggtccaaacta
tatgaagcaccaaacttctttcagaaatacaagcattatattgtgttgctagcaagcgcg
ccgacagagaagcagcaccttgagtgggtgggcctggtggagtcaaagattcgtatcctg
gtggggaacctggagaagaatgagttcatcacgctcgcacatgttaatgcacactcgttt
cccggacccaaggaaggcaacgacaaagaggagttcagcacgatgtgggtcattgggatt
gtcttcaagaaaatggaggggtcagaaaacctcaatgtggaccttacagtggacatccag
tccttcacagacactgtgtaccgtcaggcgatcagcagcaagatgtttgagcaggacatg
aagatcactgccaaacatgtgaagagaaagcagctccaacagcttctacccagtaatgtc
atacagaccaggccaagcaggaggaagcactcaacagagggaccaaggccaatgaatgac
agcagcctggacctgtcactggatagtgacaacagcctgtcagtgccctctcctccctct
gtgcctgcagcagccaataaaatcaatcctcttggctccattgggttcacaggagctatg
attactgcttcagacaaaatggacacctctgggagcacctcccctacctcgcctgtgccc
acggctcccaaatccatccagtcgcgtaaaggctccagctccagcagcagccccccccct
cctatgggccctccagcggcgcccaaggcctcctccccccctcctccacccgtatcaccg
ccagaggacaagagcaagaagcccaaaacagaggagacggccgccctggcctccaatgcc
cccagcggcgactcccctacctctggagtccttcctgtgaaacgcccagggtcaccgctg
cccgaggaccagagcaagaaacccaaagtagaggacgaagccaaggggcaggttgaagag
gagatggcctcacaaggcgatgaagctatggagacggacattaaggagctggaccctgag
cagaaagcaccatcagatcagcgtgcctccaccacggacctgtctgacgtgcctctgccc
cccgccaatcccattccagtcttgaagaactccatcaagctgcgcctcagcagatag
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