Alosa sapidissima (American shad): 121711904
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Entry
121711904 CDS
T11137
Symbol
upf1
Name
(RefSeq) regulator of nonsense transcripts 1 isoform X1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
asad Alosa sapidissima (American shad)
Pathway
asad03013
Nucleocytoplasmic transport
asad03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
asad00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
121711904 (upf1)
03015 mRNA surveillance pathway
121711904 (upf1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
asad03019
]
121711904 (upf1)
Enzymes [BR:
asad01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
121711904 (upf1)
5.6.2.5 RNA 5'-3' helicase
121711904 (upf1)
Messenger RNA biogenesis [BR:
asad03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
121711904 (upf1)
mRNA cycle factors
Common to processing body (P body) and stress granule
121711904 (upf1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
NPHP3_N
ATPase
nSTAND3
NAT10_TcmA_helicase
DEAD
UvrD-helicase
SRP54
AAA_16
UvrD_C_2
AAA_22
Motif
Other DBs
NCBI-GeneID:
121711904
NCBI-ProteinID:
XP_041951714
LinkDB
All DBs
Position
1:complement(43262936..43283770)
Genome browser
AA seq
1100 aa
AA seq
DB search
MSVEAYGPSSQTLTFLDTEEAELLGADTQGSEFEFTDFTLPSQTQTQGQTQSQLDNQVND
PDSVLQNGDDSVVKTSQLLAELNFEEDEEDTYYTKDLPVHACSYCGIHDPACVVYCNTSK
KWFCNGRGNTSGSHIVNHLVRAKCKEVTLHKDGPLGETVLECYNCGCRNVFLLGFIPAKA
DSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFLSWLVKIPSEQEQLRARQITAQQ
INKLEELWKENPTATLEDLEKPGVDEEPQHVLLRYEDAYQYQNIFGPLVKLEADYDKKLK
ESQTQDNITVRWDLGLNKKRIAYFTLPKTDSGDMRLMQGDEICLRYKGDLAPLWKGIGHV
IKVPDNYGDEIAIELRSSAGAPVEIPHNFQVDFVWKSTSFDRMQSALKTFAVDETSVSGY
IYHKLLGHEVEDVIIKCQLPKRFTAQGLPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTV
TSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQTGLKVVRLCAKSREAIDSPVSFLA
LHNQIRNMDSMPELQKLQQLKDETGELSSSDEKRYRALKRTAERELLMNADVICCTCVGA
GDPRLAKMQFRSILIDESTQATEPECMVPVVLGAKQLILVGDHCQLGPVVMCKKAAKAGL
SQSLFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYEGSLQNGVTAADRMKKGFDFQWP
QPDKPMFFYVTQGQEEIASSGTSYLNRTEAANVEKITTRLLKAGAKPDQIGIITPYEGQR
SYLVQYMQFSGSLHTKLYQEVEIASVDAFQGREKDFIILSCVRANEHQGIGFLNDPRRLN
VALTRARYGVIIVGNPKALSKQPLWNHLLNYYKEQKVLVEGPLNNLRESLMQFSKPRKLV
NTINPGARFMTTAMYDAREAMIPGSVYDRSNAGRPSNMYFQTHDQIGMIGTGPNPIAAMN
IPIPFNLVMPPMPPSGYLGQVNGPAAGRGAPKGKAGGRGGRQRSRGMGNHGGGQATMSGS
QASQDLVSQPFSQGPLTQGYITMSQPSQMSQPGLSQPELSQDSYLGDEFKSQIDVALSQD
STYQGERAYQHGGVTGLSQY
NT seq
3303 nt
NT seq
+upstream
nt +downstream
nt
atgagcgttgaggcgtatgggccgagctcgcagactctaaccttcctggacaccgaggaa
gcggagttgcttggagcagatacccagggttcggagtttgagttcaccgatttcaccctg
ccaagccagactcagacacaaggccagactcagagtcagctggacaatcaggtgaatgat
cctgatagcgttttacaaaatggtgacgactctgttgtgaaaaccagtcagcttcttgcc
gaacttaattttgaggaagacgaggaggacacatactacacgaaagacctcccggtgcat
gcatgcagctactgtggcatccatgacccggcctgtgtggtgtactgtaacacaagtaag
aagtggttttgtaacggacgtggcaacacctctggcagtcatattgtgaaccatctggtg
agggcgaagtgtaaggaagtcactctgcataaggacggccccctgggtgagactgtgctg
gagtgctacaactgtggatgccgcaacgtcttccttcttggcttcatcccagccaaggcg
gactctgtggtggtcctgctgtgcaggcagccatgtgcaagccagagcagcctgaaggac
atcaactgggacagctcgcaatggcagccgctcatccaggaccgctgcttcttgtcctgg
ctggtgaagattccctcagagcaggagcaactccgggcacgccagatcaccgcccagcag
atcaacaagctggaggagctctggaaggaaaaccccacggccacgctggaggacctggag
aagcccggcgtggacgaggagcctcagcacgtgctcctgcgctatgaggacgcctaccag
taccagaacatctttggcccactggtcaaactggaggccgactatgacaagaagcttaaa
gagtcccagacccaggacaatataacagtcaggtgggacttggggctgaataaaaagagg
attgcttatttcacccttcccaagacggactcaggtgatatgcgtctgatgcagggggat
gagatttgcctgcgctacaaaggagacctggctccgctgtggaaaggcattggacatgtc
atcaaagtcccagacaattatggagacgaaattgccattgagctgaggagcagtgctgga
gcacctgttgaaattcctcacaacttccaggtggattttgtctggaagtccacgtccttc
gacagaatgcagagtgccctgaagacctttgcggtggacgagacctctgtgtccggctac
atctaccacaagctgctgggtcacgaggtggaggatgtcatcatcaagtgccagctcccc
aagcgcttcactgcccagggtctgcccgacctcaaccactctcaggtctatgctgtgaag
actgtcctgcagcgtcccctcagcctcatccagggtccacctggcaccggcaagacagtc
acctcagcaaccattgtgtaccacctggcccgacagggcaatgggcctgtgctggtgtgc
gctcccagtaacatcgctgtcgatcagctgacggagaagatccaccagacgggcctgaag
gtggtgcgtctctgtgccaaaagcagggaggccatcgactcgcctgtctccttcctagcc
ctgcacaaccaaatccgcaacatggacagcatgcctgagcttcagaagttgcagcagctg
aaggatgagactggagagctgtcctcctcggatgagaagcgctaccgtgccctgaaacgc
accgctgagcgggagctcctcatgaatgcagatgtgatctgctgcacgtgtgtgggcgca
ggggacccacggctggctaagatgcagttccgctccatcctcatcgacgagagcacacag
gccacggagcctgagtgcatggtgcccgtggtgctgggggccaagcagctgatcctggtg
ggagaccactgccagctgggtccggtggtgatgtgcaagaaggcggcgaaggcgggcctg
tcccagtccctgtttgagcgtctggtggtgctgggcatccggcccatccgcctgcaggtg
cagtaccgcatgcaccccgccctcagcgccttcccctccaacatcttctacgagggctcg
ctgcagaatggagtcaccgccgcggaccgcatgaagaagggctttgacttccagtggcca
cagccggataagcccatgtttttctacgtgacgcagggccaggaggagattgccagctca
ggaacctcctatttgaacaggacggaggcagcaaatgtggagaagatcaccaccagactg
ctgaaggccggagccaagcctgaccagatcggcatcatcactccttatgagggccagcgc
tcatacctggtgcagtacatgcagttcagcggctctctccacaccaaactctaccaggaa
gtggagattgccagtgttgacgccttccagggcagagagaaggacttcattatcctgtcc
tgcgtacgagccaacgagcaccaaggcatcggcttcctcaatgaccctcgccgactcaac
gtggcccttaccagggccaggtacggtgtgatcatcgtggggaaccccaaggccctgtcc
aagcagccactgtggaaccacctgctgaactactacaaggagcagaaggtgctggtggag
gggcccctcaacaacctccgcgagagcctcatgcagttcagcaagccccgcaagctggtc
aacaccatcaacccgggcgcccgtttcatgaccacagctatgtatgacgccagagaggct
atgatcccaggctctgtgtacgaccggagcaacgccggacgcccatcaaacatgtacttc
caaacccacgaccagattggcatgattggcacggggccaaaccccatcgctgccatgaac
atccccatccccttcaacctggtgatgccccccatgcccccctctggatacctgggacag
gtcaatggaccagcggcaggccgcggggctccgaaggggaaagcgggtgggcgcggtggg
cgccagcgcagccgtggcatggggaaccacggcggcgggcaggccaccatgtcgggcagc
caggcgagccaagacctggtgtcccagccattctcccagggccccctgacgcagggctac
atcaccatgagccagccctcacagatgagccagccaggcctgtcccagcctgagctctca
caggacagttacctgggtgacgagttcaagtctcagatcgacgtggctttgtcccaggac
tccacctaccaaggtgaaagggcataccaacatggtggagtgactggtctgtcacagtac
tag
DBGET
integrated database retrieval system
