Alosa sapidissima (American shad): 121711922
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Entry
121711922 CDS
T11137
Symbol
pax1b
Name
(RefSeq) paired box protein Pax-1
KO
K09382
paired box protein 1/9
Organism
asad Alosa sapidissima (American shad)
Brite
KEGG Orthology (KO) [BR:
asad00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
asad03000
]
121711922 (pax1b)
Transcription factors [BR:
asad03000
]
Eukaryotic type
Helix-turn-helix
Homeo domain Paired-related
121711922 (pax1b)
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Gene cluster
GFIT
Motif
Pfam:
PAX
HTH_23
HTH_32
HTH_SB
Motif
Other DBs
NCBI-GeneID:
121711922
NCBI-ProteinID:
XP_041951741
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All DBs
Position
6:4880063..4884889
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AA seq
353 aa
AA seq
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MDQTYGEVNQLGGVFVNGRPLPNAIRARIVELAQLGIRPCDISRQLRVSHGCVSKILARY
NETGSILPGAIGGSKPRVTTPNVVKSIREYKQGDPGIFAWEIRDRLLADGVCDKYNVPSV
SSISRILRNKIGNLSQPNQYENSKPQHPQIPYNHMYPYSYSNPMSPTGNKLGNAPGVPVH
GGHVSLSRAWSSMHTVGNFLGIRAFMDPSAIAGAEGYQPKLEDWTSVNRATFPSAHAING
IDKSPIEADIKYPQTSSSLSSYVQACAYSPANQYGVYSGPAGSYVTGHPWQSQGATLSHP
NNATAMHASNLHSPMAFKHSREAGNRKPPSPLSKHQHETLSSVHGLALTTSGS
NT seq
1062 nt
NT seq
+upstream
nt +downstream
nt
atggatcaaacatacggagaagtcaaccagctcgggggtgtatttgttaatggccgacct
cttcccaatgctatccgagcaagaatcgtagagttggcccagctcggaataagaccttgt
gacatcagtcgacaattgcgcgtctcgcatggttgtgtaagcaagatcttggcaaggtac
aacgaaacgggttcgattttacccggtgcaattggaggaagtaaaccacgagtaacaaca
ccaaatgtagtgaaaagcattcgggagtacaagcaaggagaccctgggatatttgcttgg
gaaatccgtgaccgacttctcgcggatggagtttgcgacaagtacaacgttccttcagtg
agctccattagccgaattcttaggaacaagattggaaatctgtcgcaaccgaatcagtat
gaaaacagcaagccacaacatccacagataccatacaaccacatgtatccatactcctat
tccaatccaatgtctcctaccgggaacaagctgggtaacgcacctggagtgccggtacac
ggagggcacgtcagcctgtcgcgggcctggtcgtcgatgcacactgttggcaatttttta
ggtatacgggccttcatggatccttcagctattgctggagctgagggctaccagccgaag
ttagaggattggactagcgtgaaccgagccacatttccctctgcacacgccatcaatggc
atcgacaagtctcccatagaagcggatatcaaatatccacagacctcgtcgagcctctcc
agttatgttcaagcttgtgcgtactctccagccaatcaatatggggtatatagtggcccg
gctggtagttatgtgactggacatccatggcagtcccaaggagccacgctgtctcatccc
aacaacgccacagccatgcatgcgtcaaacctgcactcccctatggccttcaaacactca
cgagaagctgggaacagaaaacctccgagtcctctgagcaagcaccagcacgagaccctg
agtagcgtgcacgggctcgcgctcactacctcaggctcctaa
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