Alosa sapidissima (American shad): 121712106
Help
Entry
121712106 CDS
T11137
Symbol
arid1b
Name
(RefSeq) AT-rich interactive domain-containing protein 1B isoform X1
KO
K11653
AT-rich interactive domain-containing protein 1
Organism
asad Alosa sapidissima (American shad)
Pathway
asad03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
asad00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
121712106 (arid1b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
asad03000
]
121712106 (arid1b)
03021 Transcription machinery [BR:
asad03021
]
121712106 (arid1b)
03036 Chromosome and associated proteins [BR:
asad03036
]
121712106 (arid1b)
Transcription factors [BR:
asad03000
]
Eukaryotic type
Helix-turn-helix
ARID
121712106 (arid1b)
Transcription machinery [BR:
asad03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
121712106 (arid1b)
Chromosome and associated proteins [BR:
asad03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
121712106 (arid1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-GeneID:
121712106
NCBI-ProteinID:
XP_041952024
LinkDB
All DBs
Position
6:5171314..5244010
Genome browser
AA seq
2286 aa
AA seq
DB search
MNNVDRFHHELNITSIARASMGNNSDPREKEYGNKSISSSNPKVTSRMETGLLANHKLKN
AGGGDPPPSSHHHTPPQQQSQPFNQFQQHHQRQIQNNNISNQQSAQGDFGNRQHGGKENI
LGDQTERHQQLLNKSEEEDRSCKTGDRMGSRYDHSNLGPTNNNINQSQSGNTTVSEFNNY
YGNGRGGPCFDQHGGQQSPGTGIMHSAQNSMDQVQNSHEGYHNNPYNHYPNYRPGYGGTG
YGMMSPSRQGNNMMGPGGNTTSASHGKAAMATASASGGVNVGGFQRFPGQNQQHPSGATP
TLNQLLTSPSPMMRGYGSGYQDYNNPSAQQQQSSMGLSKEMSSQYAQTSHGWGGQQRNHP
AMSPGNNGHGGNRAQVTPMDAMAMKRSQLYSVGSSPYGQQQPGGAYPGQPYGAPGPHRYP
MGMQGRGQVPMGGMQYPPQQQISAQYGQQSMAGYCQQGQPPYFSPPQQQQQQQQQQQQQQ
QQQPQPPTSAPTQPPYMQSRPTPQQQDTPQDGYSSRGQSTTMTSGKPNHDEMGPNQQDRP
SSLPDLSGSIDDLPTGTDAGLSSAVSVSGSTSSQGEQSNPAQSPFSPHASPRLSSLRSGP
SPSPVGSPVGSSQSRSGPISPASGPGTQMAPQTPGNMSDVGSHSTLSQSPMSQDRGFAPS
MQRGAPGPQFGAQQQQQQQPGGPSMSPHPSPAGPMHHSMGPYPQQGGPPYGPQSGQYGPS
GNYQRPPNYGGTPSANYSGPSPGMGNSLGMNASSPMHGQGPGQHCGSVPAGRGPGQTTGG
RPYPGSNNANNMAPTSPSIPQPAGPGMGPPLPGVGRKPQEPGAGGIQGSPSVGQTRPPFA
RSPVYPSLPGPGGRPGPLSSPHSHQQHPHPHLSHPHPHPHPHPHPHHPHFSAPSTQPQTQ
QPPPLGPQAEQYGPGGYPGMPPMGPGAAFSQPPASGSGRMTPQGPPYNTPPQGPMPMQGD
GPVSANAKQRVDHKEVGVVPSEPPKPKDSYSSQCVSQPPTPSPLSPSPASLSSYHGEDSD
SISSPAWPKTPTSPKHSSATMTNEKITRLYEMGAEPERRAWVDRYLSFMEERGTPVPNLP
AVGKKALDLFHLYVCVREIGGLAMVNKNKKWRELSTRLNVGTSSSSASSLKKQYIQYLFA
YECKVERGEEPPPEPQQQPPQARIQPPSPANSGSLQGPQTPQSTGSNSMTETLGDLKPPS
RATTPHGPMTPQQGSRTGGVSVQDPFSEGSDPAFQKRGSVPPGAPYQQGAGTDAAMRMGF
DTNKDPYGGPRKGGSEPFMPGQMPGSGMQEMYPHGSAAGMGMGPRPQYPYGPGFDRRPDH
VMGPDGSIAPPGGQNNNDPNMFPGNRYPAHQRHGPDGYGQQYPHGMPYGPHGMYPQQQGY
KRPGEGMYGPPAKRHDGGEGYNMQYGGQQPEMYGQYGAGYMGPERRAMQGQYPPYPYARQ
GPPQHAMMSGGAPSAASGPAAGPQGNMWHPRTEMGYPYPGRQGQGPPFTGMGRAGEDVDG
RGPGQDGVWPGHPSQRQSPYPQPSSSSSSSSSAVSSAGPMPVMTNRQPPSSFQSPPTMPN
HISRAPSPAPFPRPMASGSMSPNKAHFMASMKMQKPGMPSPMPGSQSGGMPSQAMPPIHR
EISFPPGSVEATQPMLKPRRRITAKDIGTPEAWRVMMSLKSGLLAESTWALDTINILLYD
DNTVGSFTLTQLPGFLELIVEYFRRCLIEIFGILDEYEIGTEGQKTLLGPLPGSMQEEAT
TPEPESQSPPEEGEEKKPEAETEGPSVCNSGEVVVVSAEKKKEEEKTSEEVVVKEEAQEV
GRGDEAADEPPPKQASKYDRLPVKVEEREKEEDQVEDRSELLGQVTAFTSGLLHWKAGGG
DSTKHIQTHFELRTEVAGSDTDPTAQGPKPRVTGQSENVQEERNVTATMDEVLSSRAGEG
AEGDVARIQVFSFADRPRQGNLTVIEDEPRSWDEAPLSTAEPWQDALARRCVCVSNIVRG
LSFVPGNDAEMSKHPGLVLLLGRLVLLHHEHPERKRTTTSAMVAAMPPTYQREEEERGRA
CSKDEWWWDCLWALRENTLVTLANMAGQLDLSLYPESICLPVLDGLLHWMVCPSAEAQDP
FCSAGALSSSLTPQRLALECLCKLSIQDANVDLLLATPPVSRHERLFAALVRHVGERRSQ
VCREMAVAALANLAQGDPGAARAVALQKGSVPALVGFLEDSVAMAQYQQSPHSLLHAGQP
PPHPEPPSVNMMCRAAKALLALAQVEENQAEFVLYESRLLDISLSSVLNSSVAAIMCEVL
FKLGRS
NT seq
6861 nt
NT seq
+upstream
nt +downstream
nt
atgaataatgtagatcgttttcatcatgagctgaacataacaagcatagctcgcgcctct
atgggcaacaattcggatccacgagagaaggaatatggaaataaatctatatcatcttca
aatccgaaagtgacttcgaggatggagacaggtttgctagcgaatcataaactgaaaaat
gctggtggcggagatccccctccttcgtctcaccaccacacacctccacagcaacagtcg
caaccattcaatcaattccaacagcatcaccaacgtcaaattcaaaacaacaacattagc
aaccagcaatcagcgcaaggagacttcgggaatcgtcaacatggagggaaagagaatatt
ttgggcgaccaaaccgaacgccatcagcaattactgaataaaagtgaagaggaggaccga
tcctgcaaaacgggtgatcggatgggcagcaggtacgaccacagcaacttgggaccaacg
aataacaacatcaaccagtcacaaagtgggaacactacggtttctgagtttaataattat
tatgggaatggaagaggagggccttgctttgatcaacatggcggacaacaaagccctggg
acggggataatgcattcggcacaaaacagcatggatcaagtacaaaactctcacgaaggg
tatcataataacccctacaaccactatccgaattacagacctggctatggtggcactgga
tatggtatgatgagcccctcacggcaggggaacaacatgatgggcccaggtggtaatacg
acttcagctagtcatggaaaagctgccatggctacagcctcggcttctggtggtgtaaat
gtcgggggttttcagcgatttcctggacaaaatcaacagcacccatctggagctacccct
actttgaaccagttactgacatcgccaagtcctatgatgcgaggatatggcagtggctat
caagattacaataatccctctgcacaacaacaacaatcaagcatgggcttgagcaaagaa
atgagctctcaatatgcccaaacttctcatggttggggaggacaacaaagaaatcatcca
gcaatgagccctgggaacaacggtcacggtggcaacagggctcaggtgacgcccatggac
gccatggcgatgaagcgctcgcagctgtacagcgtagggagcagtccctacggccagcag
cagcccggcggggcctacccaggccagccgtacggggcgcccggcccgcaccgctaccca
atgggaatgcaggggcggggccaagtgccaatgggaggcatgcaataccctccacagcag
cagatatcagcgcagtatgggcagcagagcatggctggatactgccagcagggccagcct
ccctatttcagcccaccccagcagcagcaacaacaacaacaacaacaacaacaacaacaa
caacaacaaccgcagcctcctacgtctgcccccacacaacccccatacatgcagtccaga
ccgacacctcagcaacaggacactccacaggatggctatagcagcaggggccagtcgacg
acgatgacttcagggaagcccaaccatgatgagatgggccccaaccagcaggaccgaccc
tccagcctccccgacctgtcgggctccatcgatgacttgccgacgggcacggacgccggc
ctgagttcggcggtcagcgtctcgggctccaccagcagccagggcgagcagagcaacccg
gcgcagtcgcccttctcgccgcacgcctcgccgcggctctccagcctgcgcagcgggccc
tcgccctcccccgtgggctccccggtgggctccagccagtcgcgctccgggcccatctcc
ccggccagcgggccaggcactcagatggccccgcagacccctggaaatatgtccgatgtg
ggctcccattccactctgagtcagtcacccatgtctcaggacagaggatttgctcccagc
atgcagcgaggtgccccagggccccagtttggtgcccagcagcagcagcagcagcagcct
ggcggaccctccatgtccccacacccctctccagccggccccatgcaccacagcatgggc
ccctacccgcaacagggcggcccgccctacggccctcagagtgggcagtatggcccctca
ggtaattaccaacggccacccaattatggaggtacccccagtgccaactacagtggcccc
agccctggcatgggcaacagcctgggcatgaacgccagcagccccatgcacgggcagggc
ccaggacagcactgtggttccgtccccgctggtagagggccagggcagaccacaggcggg
cgcccctacccaggcagcaacaacgccaacaacatggcgcccacctcgcccagcatacca
cagccggcagggccgggcatgggtccgcccctgccgggggtcggtcggaaaccccaggag
cctggagcagggggcatccagggctccccctcagtcggacagaccaggcctccatttgcc
agatctccggtctaccccagcctgcctgggccagggggtcgacccgggcccctctcatcg
ccccactcccaccaacaacatccccatcctcacctgtcccatccacacccccacccccac
cctcatccccacccccaccaccctcacttcagcgccccctccacccagccccagacccag
cagcctcctcccctggggcctcaggctgagcagtacgggccaggtggctaccctggcatg
cctcctatgggcccaggggccgccttcagtcagccgccagccagcggctccggtaggatg
actcctcaagggcccccatacaacaccccgccgcaaggccctatgcccatgcaaggtgat
ggcccagtgtctgcaaatgctaaacagagggtggatcataaagaagtgggtgtggttccc
tcagagccacccaaacccaaggacagctacagctctcagtgtgtgtcccagccccccacc
ccctcccctctgtcccccagtcctgctagtctgtcctcctatcacggcgaggatagtgat
agcattagcagccctgcctggccaaagacccccaccagccctaagcacagttcggccacc
atgaccaatgagaagatcactcgcctgtacgagatgggcgcggagccagagaggcgggcc
tgggtggaccgctacctgtccttcatggaggagaggggcacgccggtgcccaacctgccc
gctgtcggcaagaaggctctggatctgttccacttgtacgtgtgcgtgcgtgagatcgga
ggcctggctatggtgaacaagaacaagaagtggcgggagctgtccacccgcctcaacgtg
ggcacgtccagcagctcggcctcgtccctgaagaagcagtacatccagtacctttttgcc
tacgagtgcaaggtggagcgcggggaggagcccccgccagaaccgcagcagcagccgcca
caggcgcggatccagcctccgtcacctgccaactctggctccctgcagggcccacagacc
ccccagtctacaggcagcaactccatgactgagaccctgggcgacctgaagccccccagc
cgagccaccacgcctcacggccccatgaccccacagcaaggcagcaggactggaggcgtg
agcgtgcaggaccctttctcagagggcagtgatccggccttccagaagcgcggctctgtg
ccccctggcgccccctaccagcagggggcaggcactgacgccgccatgagaatgggcttc
gataccaacaaggacccgtacggcggccccaggaaaggtggcagtgagccctttatgcca
ggccagatgccaggcagtggcatgcaggagatgtatccccacggatcagcagcagggatg
ggcatgggcccccggccacagtacccctatggccctggctttgacaggagacctgatcat
gttatggggccagatggaagcattgcgccccctggaggccagaacaacaatgatcccaac
atgttccctggcaacagataccctgcacatcagaggcatgggcctgatggctatgggcag
cagtacccacatggcatgccatacggaccacatggaatgtatccacagcagcagggctac
aaacgtcctggtgaggggatgtacggccctccagcaaagcgtcacgatggaggcgaaggc
tacaatatgcagtatggcggccagcagcccgagatgtacggccagtacggtgcgggctac
atggggccggagaggcgcgcgatgcagggccagtacccgccgtacccctacgcccgccag
ggccccccgcagcatgccatgatgagcggcggtgccccctcggcagcctcgggccccgcc
gcaggcccccagggcaacatgtggcaccccaggactgagatgggctatccctacccgggc
cgccagggccagggaccgccattcacgggcatgggtcgtgcaggggaggacgtggacgga
cgaggacccggtcaggatggcgtgtggcctgggcatcccagccaacggcagtccccttac
ccgcagccttcctcctcctcctcctcctcctcctccgctgtgtcctccgcagggcccatg
cctgtcatgaccaaccggcagcccccgtcctccttccagtccccgcccaccatgcccaat
cacatctcccgcgcaccgagtccggctccgttcccccggcccatggccagcggctccatg
tccccgaacaaggcccacttcatggcctccatgaagatgcagaagcccgggatgccctcg
cccatgccgggctcccagagcgggggcatgccaagccaggcgatgccccccatccaccgg
gagatcagctttcccccaggctcagtggaggccacccagcccatgctgaaaccaagacgc
aggattacagcaaaggatattggtactccggaggcatggcgtgtgatgatgtccttgaaa
tctggactgctggccgaaagcacctgggctctggacaccatcaacatcctactgtacgac
gacaacactgtgggctccttcaccctcacccagttgcctggtttcctggagctgatagtg
gagtacttcagaaggtgcctgattgaaatctttgggatcctggatgagtatgagattggc
actgaaggccagaaaaccctcctgggcccacttcctggttccatgcaggaggaagccacc
acccctgaacctgagagccaatcaccacctgaggagggcgaggagaagaaaccagaggcg
gaaacagaagggccctctgtctgcaactcaggtgaggtcgtcgtcgtttctgcggagaag
aagaaggaagaagagaagacgtctgaagaagtggtggtaaaggaggaagctcaggaggtc
gggcgaggggacgaggccgctgacgagcccccgcccaagcaggccagcaagtacgaccgt
ctgcccgtgaaggtggaggagcgggagaaggaggaggaccaggtggaggaccgctcggag
ctgcttggccaggtcactgcgttcaccagcggcctgctgcactggaaggcaggcggggga
gattccaccaagcacatccagacccactttgagctgcggaccgaagtggcagggagtgac
actgaccccacagcccaggggcccaagcccagagtgaccggccagagtgaaaacgtgcag
gaggagaggaacgtgaccgccactatggatgaagttctgagctcgcgggcaggggagggg
gccgaaggagacgtcgccaggatccaggtcttctctttcgccgatcggccgaggcagggg
aacctgacggtcatcgaggacgagcctcgctcgtgggacgaggcgccactctcgacggcc
gagccttggcaggacgccctggcccgccgctgcgtctgcgtgtccaacatcgtacgcggg
ctctccttcgtgccaggcaacgacgccgagatgtccaagcacccggggctagtcctgctg
ctgggccggctggtgttgctgcaccacgagcacccagagaggaagaggacgacgacgtcg
gcgatggtggcggccatgccgcccacgtaccagcgcgaggaagaggagcgcggccgggcc
tgcagcaaggacgagtggtggtgggactgcctgtgggcgctgcgcgagaacacgctggtc
actctggccaacatggccggccagctggacctgtcgctctacccggagagcatctgcctg
cccgtcctggacggcctgctccactggatggtgtgcccgtcggccgaggcgcaggacccc
ttctgctcggcaggcgcgctctcgagctcgctgacgccgcagcggctggcgctggagtgc
ctgtgcaagctgagcatccaggacgccaacgtggacctgctgctggccacgccgccggtc
agtcggcacgagcgcctgttcgccgcgctggtgcgccacgtgggcgagcgccgcagccag
gtgtgccgcgagatggcggtggcggcgctggccaacctggcgcagggcgaccccggggcg
gcgcgcgccgtggcgctgcagaagggctcggtgcccgccctggtgggcttcctggaggac
agcgtggccatggcgcaataccagcagtcgccgcacagcctgctgcacgccggacagccg
ccgcctcaccccgagccgcccagcgtcaacatgatgtgccgcgccgccaaggccctgctg
gcgctggcgcaggtggaggagaaccaggccgagtttgtgctctacgagagccggctgctc
gacatctcgctgtcgtccgtgctgaactcgagcgtggccgccatcatgtgcgaggtactg
tttaagctcggccgctcgtga
DBGET
integrated database retrieval system
