Alosa sapidissima (American shad): 121712186
Help
Entry
121712186 CDS
T11137
Symbol
prpf38b
Name
(RefSeq) pre-mRNA-splicing factor 38B isoform X1
KO
K12850
pre-mRNA-splicing factor 38B
Organism
asad Alosa sapidissima (American shad)
Pathway
asad03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
asad00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
121712186 (prpf38b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
asad03041
]
121712186 (prpf38b)
Spliceosome [BR:
asad03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
121712186 (prpf38b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PRP38
Motif
Other DBs
NCBI-GeneID:
121712186
NCBI-ProteinID:
XP_041952221
LinkDB
All DBs
Position
1:complement(43203599..43209721)
Genome browser
AA seq
501 aa
AA seq
DB search
MANNAIVGNQQQQQAVNKPASGKHGNVLPLWGNEKTMNLNPMILTNVLSSPYFKVQLYEL
KTYHEVVDEIYFKVTHVEPWEKGSRKTAGQTGMCGGVSRSPWRWNRRYSVYGLLPAVQAV
HFEADPQAGTPSHLLILWTGLTVSLMMRRYVDTDGRCAAGELDIVSQHSWFACELDVKAG
GGCVMTIGEMLRSFLTKLEWFSTLFPRIPVPVQKMIDQQLKARPRKQPEKEEKAEEPAGE
SARQGERRRSKTPSPRGSPKRSRSRSHQRERRGVSFDRELERERDRQRKEREGKDRDRGD
RGERERGDRDRDRDRERGDHERRRSRSAERRNRRSSSREHRKEKEKERERDGENERSRRK
EREHHHERDRERDRDREKDKEREKDKERERSKDKRSKGEAEERRHREEREEKPRHSKEKK
SKKSRSRSRERRHKAERSSKKRSRSRSRSRHEPPEERERGKKREASPSREKERSHKRSRS
QERDARSRRSQSPDRRDDGSP
NT seq
1506 nt
NT seq
+upstream
nt +downstream
nt
atggcaaacaacgcaattgtcgggaatcagcagcaacagcaggccgtgaataaacccgcc
tcagggaagcatgggaatgtgttgcccctttggggcaacgaaaaaacaatgaacttgaac
cccatgatcctcacgaatgtgctttcatctccgtatttcaaggttcagttgtatgaactt
aagacgtaccacgaggttgtggacgaaatctacttcaaggtcacacatgtggagccttgg
gagaaaggcagcagaaagaccgcaggccagactggcatgtgcggcggggtaagtagaagt
ccgtggcgttggaaccggaggtatagtgtctacggccttctgcctgctgtacaagctgtt
cactttgaagctgacccgcaagcaggtacacccagccacctcctgatcttgtggactggt
ttgacggtttccttgatgatgaggaggtatgtggacacggatggccgttgcgcagcaggt
gaattggatattgtatctcaacacagttggtttgcgtgtgagctggacgtgaaggccggc
gggggctgcgtcatgaccattggtgagatgctgcgctccttcctgaccaagctggagtgg
ttctccacactgttcccgcgcatcccagtgcccgtgcagaagatgatcgaccagcagctc
aaagcgcggcccaggaagcagccagagaaggaggagaaggccgaggaacccgcgggagag
tcagcacgtcagggggaacggaggcgctcaaagactccgagtcccaggggctcccccaaa
cgcagccgttcccgcagccaccagagagagcgccgtggcgtcagcttcgaccgcgagctg
gagcgcgagcgcgaccgtcagcgcaaggagcgcgagggcaaggaccgagaccggggggac
cggggagagcgcgagcgcggcgaccgggatcgggaccgagacagggagcggggagaccac
gagcggaggcgctcgcgcagcgccgagaggcgcaaccggcggagctccagccgggaacac
cgcaaggagaaggagaaggagcgagagcgcgacggggagaacgaacgcagccggcggaag
gagcgcgagcaccaccacgagcgagaccgagagcgggaccgggaccgagagaaggacaag
gagagggagaaggacaaagagcgggagcgctccaaagacaagaggagcaaaggggaggcg
gaggagcggcggcaccgggaggagcgcgaggagaagccgcgccacagtaaggagaagaag
agcaagaagagccgcagccgcagcagggagcgccggcacaaggccgagcgctccagcaag
aaacgctcgcgaagccgcagccgcagccggcacgagccgccggaagagcgggaacgcggg
aagaagagggaggccagcccgagccgcgagaaggagcgctcgcacaaacgcagccgcagc
caggagcgcgacgcacgcagcaggcgcagccaaagcccagatcgccgtgacgacggctca
ccttga
DBGET
integrated database retrieval system
