Alosa sapidissima (American shad): 121712319
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Entry
121712319 CDS
T11137
Name
(RefSeq) retinal homeobox protein Rx1-like
KO
K09332
retina and anterior neural fold homeobox protein
Organism
asad Alosa sapidissima (American shad)
Brite
KEGG Orthology (KO) [BR:
asad00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
asad03000
]
121712319
Transcription factors [BR:
asad03000
]
Eukaryotic type
Helix-turn-helix
Homeo domain Paired-related
121712319
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Homeodomain
OAR
Homeobox_KN
Motif
Other DBs
NCBI-GeneID:
121712319
NCBI-ProteinID:
XP_041952420
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All DBs
Position
1:43387171..43392529
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AA seq
342 aa
AA seq
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MHLSLDATPTMVDGDCLASDNYHDLKGGSSSVGGRVHSIDVILGFSKDQDPLLNPVGTGG
VQKIDMLQGKQGPTELYGHLPGITEAQPQTEYQDPGLFSSNASNDSNSKCDAELCDLQKG
MDTDSRSPEPHEEDMPKKKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLP
EVRVQVWFQNRRAKWRRQEKMDTSTMKLHDSPMLSFNRPPMPTNVGPMTNSLPLDPWLAS
PLASTTPMHSIPGFMGPTQSLQPGYAPHPGYLNTSPGMVQTMQTMQTMQTMQTMPPPPYQ
CPPAFNDKYPLEDVDQRHSSIAALRMKAKEHIQSMDKTWPHM
NT seq
1029 nt
NT seq
+upstream
nt +downstream
nt
atgcatctctcactggacgccacaccgaccatggtggatggtgactgccttgcatcagac
aactaccacgacctaaagggcggcagctccagtgtgggaggccgagtacacagcattgac
gtcatcctgggcttcagtaaagaccaggaccccctgctcaacccagtcggcactggtggt
gtccaaaaaattgatatgctgcagggcaagcagggccccactgaactgtacggccacctg
ccagggatcacagaggcccagccacagacagaatatcaggatccaggactcttctcaagc
aatgcaagtaatgacagtaacagtaagtgcgatgcggagctgtgcgacctccagaaaggc
atggacactgatagcaggtcccccgagccccacgaggaggacatgcccaagaagaagcac
cgccgcaaccgcaccaccttcaccacctaccagctccacgaactggagcgtgccttcgag
aagtcccactaccccgatgtgtacagccgtgaagagctcgccatgaaggtcaacctgcct
gaagtccgggttcaggtctggttccagaaccggcgtgcaaaatggcggcgccaggagaag
atggacaccagcacgatgaagctgcacgactcgcccatgctctccttcaaccggccgccc
atgcccaccaatgtggggcctatgaccaactccctgcccctggacccatggctggcctcc
cccctggccagcaccacgcccatgcacagcatccccggcttcatgggccccacgcagagc
ctccagcctgggtacgccccgcaccctggctacctcaacacctccccgggcatggtgcag
accatgcagaccatgcagactatgcagaccatgcagactatgccgcctccaccctaccag
tgtcctccagccttcaatgacaagtatcctctggaggacgtagaccagcgccattccagc
atcgctgcactcaggatgaaggccaaggagcacatccagtccatggacaaaacctggccg
cacatgtga
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