Alosa sapidissima (American shad): 121712925
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Entry
121712925 CDS
T11137
Symbol
clstn1
Name
(RefSeq) calsyntenin-1 isoform X1
KO
K22659
calsyntenin 1
Organism
asad Alosa sapidissima (American shad)
Brite
KEGG Orthology (KO) [BR:
asad00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
asad04515
]
121712925 (clstn1)
Cell adhesion molecules [BR:
asad04515
]
Cadherins
Cadherin related
121712925 (clstn1)
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Ortholog
Paralog
GFIT
Motif
Pfam:
CLSTN_C
Cadherin
Laminin_G_3
CDC45
Laminin_G_2
V_ATPase_I
PRIMA1
EphA2_TM
Cadherin_C_2
PFF1_TM
TMEM132_C
Zip
Motif
Other DBs
NCBI-GeneID:
121712925
NCBI-ProteinID:
XP_041952972
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All DBs
Position
7:complement(29337442..29370742)
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AA seq
980 aa
AA seq
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MQFRRYKPFASAIGLVLGLLCAVEATKVNKHKPWIETTYHGIVTENDDKVLLDPPLIALD
KDAPLRYAESFEVTFTKEGEICGFRIHGQNVPFEAVVLDKSTGEGVIRAKDKLDCELQKE
HTFTIQAYDCGEGPDGANMKKSHKANVHIQVNDVNEYSPVFKEKSYKATVIEGKKYDNIL
KVEAVDADCSFQYSQICSYDIVTPDVPFSIDKDGNIKNTEKLNYSKERMYKLTVTAYDCG
KNRASEDVLVKINIKPTCKPSWQGGTGFNKRIEYEPGTGSLALFPSMHLETCEEPITSIQ
ATIELETSHIGKGCDRDTYSEKSLHKLCGASGNTVELLPTPSSTANWTVGLPTDNGHDSD
QVFEFNGTQAIKIPEGVVSTSLKEPFTVSVWMRHGPGGREKETILCNSDKSEMNRHHYSL
YVHNCRLVLLLRQDPTEAESYKPAEFHWKLDQVCDKEWHHYVLNIEFPSVTLFVDGVTFE
PFLVTEDYPLHASKLETQLTIGACWQDGSGVDNETEAVSEPPTGGSAHMAQYFRGNLAGL
MIRSGKLDNKKVIDCLYTCKEGLDVQLPEEVANTVKVQLNPNQSSLTLEGDDIESFEKVM
QHISYLNSRQFPTPGIRHLRISTTVKCFNEETCISVPDSEGYVMVLQPEEPKISLSGIDH
FARGAADFESTEGVTLFPEMRIVSTITREVEPETETEGEDDPTVQETVVSEEIMHNLDTC
EVTVVGDDLDGEHESLEVDLAQVQQHGLEMSSSNVGMIITGVNTMATYEQVLHLIRYRNW
HTEALFDRKFKLVCSELNGRYISNEFKVEVNVIHTANPMEHANNAMVQPQFINPVHHASV
DLSGHNLVNAHQASVVPSAATVVIVVCVSFLVFMIILGVFRIRAAHQRTMRDQENGKENE
MDWDDSALTITVNPMETYEDQHSSEEEEEEEEESEDGEEEDDITSAESESSEDEEGAEQE
DQQGASRQQQLEWDDSTLTY
NT seq
2943 nt
NT seq
+upstream
nt +downstream
nt
atgcagttccgtaggtataaacccttcgcgtctgcaatcggactggtccttggactatta
tgtgcggtggaggcaaccaaagttaataagcataagccatggatcgagaccacatatcac
ggcatcgtcacagagaatgatgacaaggtgctgctggaccctcctctgattgccctggac
aaagatgccccactgcgctatgcagagagttttgaggtgaccttcaccaaagaaggagag
atctgtggcttccggatccacggacagaatgtccccttcgaggcggtggtgctggacaag
tccacgggcgagggggtcatccgggccaaggacaagctggactgtgagctgcagaaggag
cacaccttcaccatccaggcctacgactgtggcgagggtcccgacggagctaacatgaag
aagtcccataaggccaatgtccacatccaggtgaatgacgtgaacgagtactcacccgtg
ttcaaggagaaatcctacaaggccaccgtcatcgaggggaagaagtacgacaacatcctg
aaagtagaggctgtggacgccgactgctccttccagtacagccagatctgcagctatgat
atcgtcactcccgatgtgcccttctccatcgacaaggacggcaacatcaagaacacagag
aaactcaactacagcaaggagcgcatgtacaagctgaccgtgaccgcctacgactgtgga
aagaaccgggcctccgaggatgtcctcgtcaagatcaacatcaagcccacctgcaaacca
agctggcaaggggggacaggatttaataagcgaattgagtatgagcctggcactgggagc
ctggccctgtttcccagcatgcacttggagacctgcgaggagccaatcacctctatccag
gccaccattgagctggagaccagtcacattggcaagggctgcgacagagacacatactct
gagaagtccctgcacaagctgtgtggtgccagtggcaacaccgtggagctgctgcccact
cccagcagcactgccaactggaccgtgggcctgcccacagacaacggccacgacagcgac
caggtgtttgagttcaacggcacacaggccatcaagatccccgagggcgtggtgagcact
agcctgaaggagcccttcaccgtctccgtgtggatgaggcatggtcctgggggccgcgag
aaagagaccatcctctgcaactctgacaagtcagagatgaacaggcaccactactcgctg
tacgtccacaactgtcgcctggtgctgcttctgaggcaggaccctacagaggccgagagc
tacaagcctgccgagttccactggaagctggaccaggtctgcgataaggaatggcatcat
tacgtgctgaacatcgagttcccctcggtgaccctgtttgtcgacggcgtcaccttcgag
ccgttcctggtaaccgaggactaccccctgcatgcctccaagctggagacccagcttacc
attggagcctgctggcaagacggctcaggagttgacaatgagaccgaggccgtgtctgag
cctcccacaggtggcagtgcccacatggctcagtacttcaggggcaaccttgccgggctc
atgatccgctcgggcaagctggacaacaagaaggtgatcgactgcctgtacacctgcaaa
gagggcctggacgtgcagcttcctgaagaggtggccaacactgtgaaggtgcagttaaac
cccaaccagtcttctctgaccctggagggtgatgacattgagagctttgagaaggtcatg
cagcacatctcctacctgaactccaggcagttccccacacctggcatcagacacctccgc
atctctaccacggtcaagtgctttaacgaggagacgtgcatctccgtgccggactccgag
ggctatgtgatggtactgcagcccgaggagcccaagatcagcctcagcggcatcgaccac
ttcgcccgcggcgctgccgacttcgaaagcaccgagggcgtcaccctcttccccgagatg
cgcattgtcagcaccatcacccgcgaggtggagccagagactgagaccgaaggcgaggat
gaccccacggttcaagagacggtggtgtcagaggagatcatgcacaacctggacacgtgc
gaggtgacggtggtgggcgacgacctggacggcgagcatgagagcctggaggtggacctg
gcacaggtgcagcagcacggcctggagatgagctcctccaacgtgggcatgatcattacc
ggcgtgaacaccatggccacctacgagcaggtgctgcacctgatccgctacaggaactgg
cacacggaggccctcttcgacaggaagttcaagctggtctgctccgagctcaatggccgc
tacatcagcaacgaattcaaagtggaggtgaacgtcatccacacagccaaccccatggag
cacgccaacaatgccatggttcagcctcagttcatcaacccagtgcaccacgcctcagtg
gacctctctggacacaacctggtcaatgctcaccaagcctcagtggtccccagcgctgcc
acggtcgtgatcgtggtgtgcgtgagcttcctggtgttcatgatcatcctgggcgtgttc
cgcatccgcgccgcccaccagcgcaccatgagggaccaggagaacggcaaggagaacgag
atggactgggacgactcggccctcaccatcaccgtcaaccccatggagacatatgaggac
cagcacagcagtgaggaggaggaggaagaggaggaggagagtgaggatggcgaggaggag
gacgacatcaccagcgccgagtcggagagcagcgaggacgaggagggcgccgagcaggag
gaccagcagggggccagcagacagcagcagctggagtgggatgactccacacttacctac
tga
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