Alosa sapidissima (American shad): 121712953
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Entry
121712953 CDS
T11137
Name
(RefSeq) embryonic polyadenylate-binding protein-like isoform X1
KO
K13126
polyadenylate-binding protein
Organism
asad Alosa sapidissima (American shad)
Pathway
asad03015
mRNA surveillance pathway
asad03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
asad00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
121712953
09123 Folding, sorting and degradation
03018 RNA degradation
121712953
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
asad03019
]
121712953
03041 Spliceosome [BR:
asad03041
]
121712953
Messenger RNA biogenesis [BR:
asad03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
121712953
mRNA cycle factors
Stress granule specific factors
121712953
Spliceosome [BR:
asad03041
]
Complex C
Other components
Complex C specific factors
121712953
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
MLLE
RBD_DEAH11
RRM_occluded
RBD_RDR6
Motif
Other DBs
NCBI-GeneID:
121712953
NCBI-ProteinID:
XP_041953032
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All DBs
Position
7:15278555..15294300
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AA seq
659 aa
AA seq
DB search
MNTGQAYPLASLYVGDLHPDVTESMLYQKFSPAGPIMSIRVCRDVITRRSLGYAYVNFQQ
PADAECALDTMNYEVLKGRPMRIMWSQRDPGLRKSGVGNIFIKNMDESIDNKALYDTFSA
FGNILSCKVVCDERGSKGYGFVHFETQEAANRAIETMNGMLLNDRKVQEAGKEMETFSAD
PSIANPKLQSLWKNCQLSAISFVGHFKSRKEREAECGAKAMVFTNVYIKNFGETYDDKQL
ENIFSEFGKTLSVRVMRDERGSSRGFGFVNYENHEDAQKAVDAMNGKELNGRILYVGRAQ
KRVERQGELKRKFEQIKMDRMHRYQEKCLGVNLYVKNLDDSINDERLRKEFAPYGTITSA
KVMTDGSHSKGFGFVCFTSPEEATRAVTEMNGRIISTKPLYVALAQRKEERKAILTNQYM
QRLASVRTMPGTLVTNYQQPPYYIPTMPQPPGRHPYNPGSNVRFGPRWTTQPPRPQALYS
AQYVTTRRASTPISSVQQASTQAPRVPKNMLRMANIGTQTAGRRAVTGGVSRGVSQYKYS
SGVRNVQQVMPAPSPPVGQQVASGPVVEPAVHVRGQEPLTASMLASAPLMEQKQLLGERL
YPLIYALHPSLAGKITGMLLEIDNSELLHMLESPESLHSKVEEAVAVLQAHQAKELATK
NT seq
1980 nt
NT seq
+upstream
nt +downstream
nt
atgaacactggacaagcttatcccctagcctcgctctatgtgggggatcttcatcctgat
gttactgagtctatgctgtaccagaagttttcacctgctggacccattatgtctatccgt
gtatgccgtgatgtcattactcgcagatctttggggtatgcttatgttaactttcagcag
cctgcagatgcggaatgcgctcttgacacaatgaactatgaggtcctcaagggtcgacca
atgagaatcatgtggtcacagcgggatcctggtctaaggaagtctggcgttgggaatatc
ttcatcaagaacatggatgagtccattgacaacaaggcactttatgacaccttctctgcg
tttggaaatattctgtcctgcaaggttgtgtgtgatgagcgtggttccaaaggctatggc
tttgtgcactttgagacacaagaggctgccaaccgtgccattgagaccatgaatggcatg
ctgctgaatgatcgtaaagtacaagaggcaggtaaagaaatggagacattcagtgcagat
ccaagcattgcaaacccaaagctccaatccctgtggaaaaattgtcagctgtcggcaatt
agttttgtaggtcattttaaatccagaaaagaacgtgaggcagagtgtggagcaaaggct
atggtcttcactaatgtttacatcaagaactttggtgaaacctatgacgacaagcaactt
gaaaacatcttttcagagtttggcaagacgctgagtgttagggtgatgcgcgatgagcgc
gggagctctcgtggctttggctttgtgaactatgagaatcacgaggacgctcagaaggct
gtggatgcgatgaacgggaaggagctgaatgggaggatcctgtacgttggccgtgctcag
aagagggtggagcggcagggggagctcaaacgcaagtttgaacagatcaagatggaccgc
atgcaccgctatcaggagaaatgtttgggggttaacctttatgtaaagaacctggatgat
agcatcaatgacgaacgactgaggaaggagtttgctccctatggcaccattaccagcgcc
aaggtgatgactgacggcagccacagtaagggcttcggctttgtttgcttcacctctcca
gaggaggccactcgcgccgtcacggagatgaatgggcgtatcatcagcaccaagcccctc
tatgtggcattggcacagcgcaaggaggagcgcaaggccatcctcaccaaccagtacatg
cagcggctggccagcgtcaggaccatgcccggaaccctggtgaccaactaccagcagcca
ccctactacatccccaccatgccacagcctccaggccgtcatccatacaatccaggttct
aatgtccgctttggcccaagatggaccactcagcctcccagaccacaggcgctgtactct
gctcagtacgtgacgacccgccgggcctccaccccaatcagcagtgtccagcaggcctcc
acacaggccccacgtgttcccaaaaacatgctaaggatggccaacatcggtacccagact
gcaggaagacgagcagtcactggcggtgtgagtcgtggggtcagccagtacaaatactcc
agtggagtccgcaacgtccaacaggtgatgcccgcaccttcgccccctgtgggccagcag
gttgcaagcggcccagtggtggagccagcggttcatgtgaggggacaggagcctctcaca
gcctctatgctggcatcagctccactcatggagcagaaacagctgctgggtgagcgtctg
taccccctgatctacgccctgcaccccagcctggccgggaagatcactggcatgctgctg
gagattgacaactccgagctgctccacatgttggagtctcccgagtctctgcactccaag
gttgaggaggctgttgctgtgcttcaggctcaccaagctaaagaacttgcaactaaatga
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