Alosa sapidissima (American shad): 121713010
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Entry
121713010 CDS
T11137
Symbol
trim101
Name
(RefSeq) tripartite motif containing 101 isoform X1
KO
K10654
tripartite motif-containing protein 55
Organism
asad Alosa sapidissima (American shad)
Pathway
asad04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
asad00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
121713010 (trim101)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
asad04121
]
121713010 (trim101)
Ubiquitin system [BR:
asad04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRIM/RBCC proteins
121713010 (trim101)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_UBOX
zf-C3HC4
zf-RING_5
zf-RING_2
RING_XB3-XBAT31
zf-B_box
zf-C3HC4_3
zf-C3HC4_4
zf-C3HC4_2
Trypan_PARP
Serine_rich
zf-RING_6
SspH
DUF6270
Motif
Other DBs
NCBI-GeneID:
121713010
NCBI-ProteinID:
XP_041953176
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Position
7:30782440..30791821
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AA seq
592 aa
AA seq
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MSLPLDLGPYHRDQAMSTLERQLICPICLEVFTKPVVILPCQHNLCRKCANELYQPSLFQ
VGTGGRFRCPSCRHEVVLDRHGVYGLQRNLLVENIIDVYKQESASSRPLPKVPVQLTCEE
HEGEKVNIYCISCNVPTCSLCKVFGAHKSCQVAPLPEVYQQQKAELSDGIDSLVARNDQV
QASISELEEICRNIEDNSKTQKQALCEKFDRLSTILEERRKIMTQRITYEQDDKTNHTQS
LVRTYGEQVNSNSKLVENALHTMEEPEMAAFVQNAKILIEKVNEAANTIVVETLEPGYEN
MDHYKVNFNAEERALYQLDFIKIEEEVEEVPEEQPEAEPEPIPEPETELDSEKEPEPEAG
PAPILDLFPEAEDSEPVLELKSETWGVKDSEEGDREEVRGQAEGCSDPKIVDLCKQEGIS
TQQDEQECGCEEHDAGDLGTQSLLAGANEDTKLYPGWYKANSWQVASPSVAQSSDSLQVP
DCLSQVVRDSSPQSPPQPQFQQSFPLPVWMGSGFIPMAPENPTSHFGRVSSETAPGFLHQ
TGDGGSDVGQHSTNQGSMIAISPQAVTFFFYFLALMVILQRVWGHIQCIICT
NT seq
1779 nt
NT seq
+upstream
nt +downstream
nt
atgtcactgcccctggatctaggcccctaccaccgggaccaggccatgagcacgctggag
aggcagctcatctgccccatctgcctggaggtcttcaccaagccagtagtcatcctgcct
tgccagcataacctctgccgcaagtgtgccaacgagctctaccagccgtcactgtttcag
gttggtaccggtgggcgcttccgctgtccttcctgtcggcacgaggtggttcttgatcgg
catggcgtgtacgggctacagcgcaatttactggtggagaacatcattgatgtttacaag
caggaatctgctagttcccggcccctgccaaaagttccagtgcaactcacctgtgaggaa
cacgagggtgagaaggtcaacatctactgcatctcctgcaatgttcccacctgctcgctc
tgcaaggtttttggagcccacaagtcctgccaggtagcccctctgccagaggtctaccag
cagcagaaggcagagctcagtgatgggattgactcactggtggccagaaatgatcaagtc
caagcttccatcagtgagctagaggagatctgtcggaacatagaggacaacagcaagacc
cagaagcaggctctttgtgagaagtttgatcgtctgtctaccatattagaagagcgccgg
aagatcatgacgcaacgcatcacttatgaacaggatgataagacaaaccacactcaatct
ctggtccgtacctatggggagcaggtgaactctaactccaagctggtggagaatgctctg
cacaccatggaggagcctgaaatggctgcctttgttcagaatgcaaagattctcattgag
aaagtgaatgaggcagccaataccattgttgtggaaacccttgagcctggctatgaaaac
atggaccactacaaggtgaatttcaatgcagaggagagggctctttaccagcttgacttc
atcaagattgaagaggaagttgaggaggtcccggaagagcagcctgaggcagaacctgaa
cccattccagaaccggagacagaactggactcagagaaagaaccagagcctgaagccggc
cctgctcccatattggatcttttccccgaggcagaggactcagagccagtgctagagctg
aagtctgaaacttggggcgtcaaggattcagaagagggggatagggaggaggttcggggg
caggctgagggttgctctgaccccaaaatcgtggacctttgtaaacaagaggggataagc
acccagcaggatgagcaggagtgcgggtgcgaggagcatgatgcaggtgacttgggaacc
cagagcttgctggcaggtgctaacgaagacaccaagctctaccccggctggtacaaagcc
aacagctggcaggtggctagtcctagtgtggcccagtccagtgactcactgcaggtgcca
gattgcctttcccaagtagtaagggactcctcgccccagtctccaccccagccccaattc
caacagtccttcccactgcccgtgtggatgggcagtggttttatccccatggccccagaa
aacccaaccagtcattttgggagggtttcctcagagaccgctccagggttcctccatcag
acaggggatggaggctccgatgtaggccagcattctaccaaccaaggcagcatgattgcc
atctctccacaggccgtcaccttcttcttttacttcctggctttgatggtcattcttcag
cgggtttgggggcacattcagtgcatcatttgtacatag
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