Alosa sapidissima (American shad): 121713157
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Entry
121713157 CDS
T11137
Symbol
scn8aa
Name
(RefSeq) sodium channel, voltage gated, type VIII, alpha subunit a isoform X1
KO
K04840
voltage-gated sodium channel type VIII alpha
Organism
asad Alosa sapidissima (American shad)
Pathway
asad04517
IgSF CAM signaling
Brite
KEGG Orthology (KO) [BR:
asad00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04517 IgSF CAM signaling
121713157 (scn8aa)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
asad04040
]
121713157 (scn8aa)
Ion channels [BR:
asad04040
]
Voltage-gated cation channels
Sodium channel, voltage-gated (Nav)
121713157 (scn8aa)
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Ortholog
Paralog
GFIT
Motif
Pfam:
Ion_trans
Na_trans_assoc
Na_trans_cytopl
PKD_channel
IQ_SCN5A_C
IQ
GPHH
ATP-synt_B
Neur_chan_memb
Dynamin-like_hel_bact
Lustrin_cystein
Motif
Other DBs
NCBI-GeneID:
121713157
NCBI-ProteinID:
XP_041953484
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All DBs
Position
7:complement(12631337..12686901)
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AA seq
1957 aa
AA seq
DB search
MAAPLLAPPGPDSFKFFTRESLANLEKRIAEEKAKPPPKPDSSYRDDDDENKPKPSSDLE
AGKNLPFIYGDIPSSMVATPLEDLDHFYINKKTFIVINKGKTIYRFSATSSLYMISPFNV
FRQIAIKILIHSLFSMIIMCTILTNCVFMTFSNPPEWSKQVEYTFTGIYTFESLVKIIAR
GFCIDDFTFLRDPWNWLDFMVISMAYVTEFVDLGNVSALRTFRVLRALKTVAVIPGLKTI
VGALIQSVKKLSDVMILTVFCLSVFALIGLQLFMGNLRQKCVIWPLNGTTTYLSNGSVGF
NWDEYIMNDTNFYFVPGQLDALICGNSSDSGRCPEGYTCMKAGRNPNYGYTSFDSFGWAF
LALFRLMTQDFWENLYQLTLRAAGKTYMIFFVLVIFVGSFYLVNLILAVVAMAYEEQNQA
TMEEAAKKEEEFTAMLEQLRKNQEEAQANAMATSAGTVSEDAVEDEGEGNLSCSSSEMSK
LSSKSAKERRNRKKKSRQKELGEEKGDYEKFVKSESDDGIKKSRFRFPDNRLGRRTSIMN
QSLLSIPGSPFLSRHNSKSSIFSFKRGKDGGSENEFADDEHSTVEECEERRNSLFSPYRR
SSYSGYNYGKRNSTVDCNGVVSLIGPGPGGRLLPEVIIDKAATDDSQQTTEVEIKKKLSG
SLMVSVDQLNTSFGRKERANSVMSVATNTLVEELEESQRKCPPCWYKFSNTFLIWECCPI
WIEIKRITLMIVMDPFVDLAITICIVLNTLFMAMEHYPMTPHFEHVLSVGNLVFTGIFTA
EMFAKLVAMDPYYYFQEGWNIFDGFIVSLSLMELGLANVEGLSVLRSFRLLRVFKLAKSW
PTLNMLIKIIGNSVGALGNLTLVLAIIVFIFAVVGMQLFGKNYKDCVCKIAQDCELPRWH
MNDFFHSFLIVFRVLCGEWIETMWDCMEVAGQSMCLIVFMMVMVIGNLVVLNLFLALLLS
SFSADNLAATDDDGEMNNLQLAVIRMKLGIAWAKAKARHVVAVALKRKVTDEDDMYDKKL
NCIANHTGVDINRDLDYQNGTTSGIGSSVGKYMIDEDHMSFINNPNLTVCVPIAVGESDF
ENLNTEDFSSESEAEGSKDLEDTSSSEGSTIDIKPDVEDVVVAEVVEEYVEPDACWTEGC
IARYKCCDVPITEGWGKYWWFLRKTCYLIVEHNWFETLIIFMILLSSGALAFEDVYIEQR
KTIRVVLEYADRVFTYIFILEMLLKWVAYGFVKYFTNAWCWLDFFIVDVSIVSLIANALG
YSDLGPIKSLRTLRALRPLRALSRFEGMRVVVNALVGAIPSIMNVLLVCLIFWLIFSIMG
VNLFAGKYYYCFNQTSEQLFELDVVNNKTECFAFINANYSEVRWKNVKINFDNVGAGYLA
LLQVATFKGWMDIMYAAVDSRRVEDQPLYEDNIYMYIYFVIFIIFGSFFTLNLFIGVIID
NFNQQKKKFGGQDIFMTEEQKKYYNAMKKLGSKKPQKPIPRPQNKIQGMVFDFVTQQVFD
ISIMILICLNMVTMMVETDDQSDETENILYWVNFIFIVLFTSEFVLKLTALRHYYFTNGW
NIFDCVVVILSIVGMFLADLIEKYFVSPTLFRVIRLARIGRILRLIKGAKGIRTLLFALM
MSLPALFNIGLLLFLVMFIFSIFGMSNFAYVKREVGIDDMYNFETFGNSMICLFMITTSA
GWDGLLAPILNYPPDCDPLKENPGTTVKGDCGNPSVGIFFFVMYIIVSFLIVVNMYIAII
LENFSVATEESADPLCEDDFESFYEIWEKFDPTASQFITFAKLGDFADTLEHPLRVPKPN
TIELIAMDLPMVSGDRIHCLDILFAFTKRVLGDSGDLDMMRQQMEERFIAANPSKISFEP
ITTTLRRKQELMSASIIQRAYRAHLLRRGFVCKRILGINKLENGGTNQEKKEGTPSTASL
PSYDSVTKPEKEKLDESESFGKKEKGKNQKDVRESKC
NT seq
5874 nt
NT seq
+upstream
nt +downstream
nt
atggctgcaccccttcttgcaccgccaggacctgatagcttcaaattttttacccgagaa
tccctggctaaccttgagaagcgcattgctgaggaaaaagccaagccgccacccaagcct
gacagcagttaccgtgacgatgacgacgaaaataagcccaagcctagcagtgacctggag
gccggcaaaaacctgcccttcatctatggagacatcccttcttcaatggtggcgacacca
ttggaggacttggaccatttctacataaacaagaaaacgtttatagtgataaataaaggg
aaaacaatctaccgctttagtgccacatcttccctgtacatgatcagcccttttaatgtt
tttaggcaaatagctattaaaattttgatacattcattgttcagcatgatcattatgtgt
actattttgaccaactgtgtattcatgacttttagtaaccctccagaatggtccaaacaa
gtagagtacacattcacgggaatttatacgttcgaatctcttgtaaaaatcattgcccga
gggttctgtatagacgacttcacattcctccgagacccatggaactggctggatttcatg
gtcatttctatggcatatgtaacagagtttgtggacctgggaaatgtgtctgcgctgaga
accttcagagttctccgagcattgaaaactgttgctgtcattccaggtctgaagaccatt
gtgggtgctctgatccaatcggtgaagaagctgtcggacgtgatgatcctgacggtgttc
tgcctgagtgtctttgccctgatcggcctgcagctcttcatgggcaacctgcggcagaag
tgcgtcatctggcctctcaacggcaccaccacctacctgtccaatggcagcgtgggcttc
aactgggacgaatacatcatgaacgacaccaatttctacttcgtgccagggcaactagat
gcccttatctgcggcaacagctcagactctggtcgctgtcctgagggctacacatgcatg
aaagctgggcgcaatccaaactacggctacaccagcttcgacagcttcggctgggccttc
ctggccctcttccgcctcatgacgcaggacttctgggagaacttgtatcagttgacactg
agggctgcagggaagacgtacatgatcttctttgtgctggtgatcttcgtgggctccttc
tacctggtgaacttgatcctggctgtggtggccatggcctacgaggagcagaaccaggcc
accatggaggaggcggccaagaaggaggaggagttcacggccatgttggaacagctcagg
aaaaaccaggaggaagcacaggcgaatgccatggcgacgtcggcgggcacggtgtcggaa
gacgcggtggaggacgagggcgagggcaacctgtcgtgcagctcctccgagatgtccaag
ctgagctccaagagtgccaaggagcgccgcaaccgcaagaaaaagtcgcgtcagaaagag
ctgggcgaggagaaaggcgactacgagaagtttgtcaagtccgagtcggacgacggcatc
aagaagagtcgcttccgctttcctgacaaccggctgggccgccggacctccatcatgaac
cagtctctgctcagcatccccggctccccgttcctgtcgcgccacaacagcaagagcagc
atcttcagcttcaagcgcggcaaggacggcggctcggagaacgagttcgccgacgacgag
cacagcacggtggaggagtgcgaggagcgccgcaactcgctcttcagcccgtaccgccgc
agcagctacagcggctacaactacggcaagcgcaacagcacggtggactgcaacggcgtg
gtctccctgatcggccccgggcccggcggacgccttctgcctgaggtgataatagataag
gcagctactgacgacagtcagcaaactactgaggtggagattaagaagaaactctctggc
tctctcatggtttctgtggaccaactcaacacctcatttgggcgcaaagaacgagcaaac
agtgtcatgagcgtggcgaccaacacactagtggaggaactggaggagtcccagcggaag
tgtcctccatgctggtacaagttctccaacaccttcctgatctgggaatgctgtccgata
tggatcgaaatcaagaggatcacgctaatgattgtgatggatccattcgtggacctggcc
atcactatctgcatcgtgctcaacaccctcttcatggccatggagcactaccccatgacg
ccacattttgaacatgtgctgagtgtgggcaatctggtgtttacagggattttcactgcc
gaaatgtttgccaaactggttgctatggacccatactactacttccaagagggctggaac
atctttgacggcttcattgtgagcttgagcttaatggagctgggtctggccaacgttgaa
gggctgtctgtcttgcgatcattccgtttgctgagagtgttcaaactggccaagtcgtgg
cccactctcaacatgctgatcaagattatcgggaactctgtgggtgccctggggaacctg
accctggtgctggccatcatcgtcttcatcttcgccgtggtgggcatgcagctgttcggc
aagaactacaaggactgcgtgtgcaagatcgcccaggactgcgagctgccccgctggcac
atgaacgacttcttccactccttcctcatcgtgttccgtgtgctctgcggcgagtggatc
gagaccatgtgggactgcatggaggtggccggccagtccatgtgcctcatcgtcttcatg
atggtcatggtcatcggcaatctggtggtgttgaacctcttccttgccttgctgctgagc
tcgttcagtgcggacaacctggcggcgaccgatgacgacggcgagatgaacaacctccag
ctggccgtcatccgcatgaagctgggcatcgcctgggccaaggccaaggcgcggcatgtg
gtggctgtcgccctaaaacgcaaggtgactgacgaggacgacatgtacgacaagaagctc
aactgcatcgccaaccacacaggcgtggacatcaaccgcgatctggactaccaaaacggc
accaccagcggcatcggcagcagcgtgggcaagtacatgatcgacgaggaccacatgtcc
ttcatcaacaaccccaacctgaccgtgtgcgtgcccattgctgtgggagagtcggacttc
gagaacctcaacaccgaggacttcagcagcgagtcagaggccgagggcagcaaagatcta
gaggacaccagctcgtcagagggcagcaccatcgacattaagccagatgtagaggacgtg
gtggtggcggaggtcgtggaggagtacgtggagccggatgcctgctggacagaaggttgc
atcgcccgttacaagtgctgtgatgtgcccatcactgaaggctggggcaagtactggtgg
ttcctgaggaagacctgctatctcattgtggagcacaactggtttgagaccctcatcatc
ttcatgatcttgcttagcagtggagcactggccttcgaggatgtgtacattgagcagagg
aagaccatccgtgtcgtcctagagtacgccgacagagtgttcacctacatcttcatcctg
gagatgctgctcaagtgggtggcctatgggtttgtcaagtatttcaccaacgcttggtgc
tggctggacttcttcatcgtagatgtgtctatagtcagccttatagctaatgccctgggg
tactccgatctagggcccattaaatcactcaggacactaagggccctcaggcccctcaga
gccttgtcacgttttgaagggatgagggtggtagtcaacgccttggtgggtgccattccc
tccatcatgaatgtgttgctggtgtgcctcatcttttggctgattttcagtatcatgggc
gtcaacctgtttgcgggcaagtactactactgtttcaaccagacgtccgagcagctcttt
gagctggacgtggtcaacaacaaaacagagtgctttgccttcatcaacgccaactactcg
gaggtgcgctggaagaacgtgaagatcaactttgacaacgtgggcgccggctacttggcc
ctgctccaagtggctacattcaagggctggatggatatcatgtatgctgctgtggattca
agaagggtggaagatcagccactatatgaggacaacatctacatgtacatctactttgtt
atcttcatcatcttcggttccttcttcaccctcaacctcttcattggtgtcatcatcgac
aacttcaatcaacagaagaaaaagtttgggggtcaggatatcttcatgacagaagagcag
aaaaaatactacaacgccatgaaaaagttgggctcaaagaaaccccagaagcctattcct
agaccacagaataagattcaagggatggtgtttgattttgtaactcagcaagtgtttgac
atttccatcatgatcctgatctgcctcaacatggtcaccatgatggtggagacagacgac
cagtccgatgagaccgagaacatcctctactgggtcaacttcatcttcattgtgctcttc
acatcagagtttgtcctcaagctcacagccctgcgacattactatttcaccaatggctgg
aacatctttgactgtgttgtggtcattctttccatcgtaggcatgttcttggctgacctg
atcgagaagtactttgtgtctccaacgttgttcagggtaatccgtctggctcgaattggt
cgcatcttgcgactgattaaaggggccaagggcatccgaactttactgtttgccctgatg
atgtcactgccagccctgttcaacattggcctgttgctgtttctggtcatgtttatcttc
tccatctttggcatgtccaactttgcctatgtcaagcgagaggtgggaatagatgacatg
tacaattttgagacctttggcaactccatgatttgcctgttcatgatcacaacctcggct
gggtgggatggtctcctggcgcccatcttgaactatccgcccgactgtgaccccctcaag
gagaatccgggcaccacagtgaagggcgattgcgggaacccttcggtgggcatcttcttc
tttgtgatgtacatcattgtgtccttcctcatcgtggtgaacatgtacatcgccatcatc
ctggagaacttcagcgtggccacggaggagagtgccgatccgctctgcgaggacgacttt
gagtccttctacgagatctgggagaagttcgaccccactgcctctcagttcatcaccttt
gccaagctgggcgactttgccgacacgctcgagcacccgctgcgcgtgcccaagcccaac
acgattgagctgatcgccatggacctgccgatggtgagcggcgaccgcatccactgcctg
gacatcctcttcgctttcactaagcgcgtgctgggcgacagcggcgacctggacatgatg
cggcagcagatggaggagcgcttcatcgctgccaacccctccaagatctcgttcgagccc
atcaccacgacgctgcgccgcaagcaggagctcatgtccgcctccatcatccagcgcgcc
taccgcgcccacctcttgcgccgcggatttgtctgcaagcgcatcctcgggattaacaag
ctggagaacggtgggaccaatcaagagaaaaaagagggcacgccctccactgcctccctg
ccctcgtatgacagcgtgaccaaaccggagaaggaaaagctggacgagagcgagagcttt
ggcaagaaggagaagggcaaaaaccaaaaagacgtcagggaatccaagtgttaa
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