Alosa sapidissima (American shad): 121713163
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Entry
121713163 CDS
T11137
Symbol
chl1a
Name
(RefSeq) cell adhesion molecule L1-like a isoform X1
KO
K06758
L1 cell adhesion molecule like protein
Organism
asad Alosa sapidissima (American shad)
Brite
KEGG Orthology (KO) [BR:
asad00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
asad04515
]
121713163 (chl1a)
Cell adhesion molecules [BR:
asad04515
]
Immunoglobulin superfamily
L1 family
121713163 (chl1a)
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Ig_3
I-set
fn3
Ig_2
ig
Bravo_FIGEY
V-set
FN3_DSCAM-DSCAML_C
C2-set_2
Ig_6
Adeno_E3_CR1
Receptor_2B4
NDNF
Motif
Other DBs
NCBI-GeneID:
121713163
NCBI-ProteinID:
XP_041953522
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Position
7:32429035..32497976
Genome browser
AA seq
1295 aa
AA seq
DB search
MRPLWGHCLGILLALSSTVFGLHIPLEVEQLPTITAKAPSFLIAFPFDESFTLKCEAKGN
PQPAYRWTRDGQHFDPRRDPRLQTHPNSGTFVIPNNKHTSEYRGKYRCYASNELGTAITE
ETQFIVPNVPKFPKEKLPAVVVEEGKSIVLECNPPEGIPPRHIYWMTNGLHHIDQDERVS
MGLNGNLYFSNAVVKDSRRDYCCFAAFTTIRTIVQKTAMSLVVKPVKGDAELEEGKSTER
EPSLLLPPSDQSVVHLVKGDELELECIAEGLPTPLYEWTKLREKLPERTNIKNFGKLLTL
AKVKEEDDGVYKCTAKNSLGEKSHLFRVSVEEPPRWAEGTPQDQLVTIGSDVQIKCATAG
RPRPTVTWRINGQLIGDMTVPNGRVFDDTIMLHQVQRSDTAVYQCQASNRHGSIMANVNL
MVLNIRPLILTKDYLEYSAVQGKHVVLYCKVFSSPPAHIIWTSGETGAIVEGGRFSVLAD
DGSLLIKSVEGGDSGQYTCQASNSEGVTDITAKLEIKDPTRIVEPPQDLKILRGTMAQFI
CQADYDRSLRRELEILWARDGEETYLNSTEDVRFSVDDGILQISNVSHSDEGLYLCIART
TLDQDRATAYLTVLDVPEAPKNLVLAEKRGRSVRLKWTPGKEHNSPITEFVIEYEENQWD
PGRWRELERVPGNHVSAMLMLQGHINYQFRVSAINDLGQGSASRPTERYKTQATEPDRNP
ENIKIEGHLPNQMDITWEPLLPVEHNGPGLEYKVSYRRLGVDDHWTEQMVKRHLFVVKNT
PTFVPYEIKIQAHNQEGWGPEPKVVTGYSGEDVPLASPEDVSVEMVNTTLLRVRWSPVPA
NMLRGHLGGYNVNWWRMRSLLASSKAAGEKQSMRVFGNRTHTLVPGLRPYSEYRLSVNVF
NKKGNGPSSLPVTFTTPQEVPEKMSLLRATNPQRTSITLVWAPPMETNGILTGYRLQYQQ
MNDTQHLGPLHSMNISQPDVTHWVLDGLDRFSAYKFYLSACTQVGCGPAISEESSTAAEA
PDLNPTAEDFTPTAFVTPTEINVASTTTTDSTVKSITPVAAGIPTGMTLLNVSYFVSDTY
AKISWTVPGEQKDSELYVAYMNHREGTWRTPEAVSASKAFHLIDGLAPGSVYTVRVLASR
RLDSAVIFEDVIHTSEKDADRQDAGVSSRGWFVGLMCVLPLATLAALIGCFVSKNRGGKY
AVKEKEDLPADEESKGPDEGTFCEYSDNEEKPLKGSLHSIDGGIEVATGEDDSDESVEYD
DEEDQFNEDGSFIGEYSGRRRRGSAEANGPSSSVA
NT seq
3888 nt
NT seq
+upstream
nt +downstream
nt
atgaggccgctgtggggtcattgcctgggcatcctcctggccttgtcgtccaccgtcttt
gggctccacatccccctagaagtggaacagctgccaaccatcacggcaaaggcgcccagc
ttcttgattgccttcccgtttgatgagagtttcactctgaagtgcgaagccaaaggcaac
ccgcagccagcataccgatggacaagagacgggcagcactttgacccacggcgcgatcct
cggcttcagacgcacccgaactccgggacctttgtgatccccaacaataaacacacctct
gaataccgtgggaagtaccgatgctacgcgtccaacgaactaggaactgccataacagag
gagacccagtttattgtacccaatgtcccgaagttccccaaagagaagctgccggcggtg
gtggttgaagagggcaagtccattgttctggagtgcaacccccccgaaggtatcccccca
cgccatatctactggatgactaacgggctgcatcatattgaccaggatgagagggtgtcc
atgggtctgaacgggaacctctacttctccaatgccgtagtgaaggacagtcgccgtgac
tactgctgctttgccgccttcaccacgatacgcaccatcgtgcagaagacagccatgtct
ctagtggtcaagcccgtaaaaggtgatgctgagttggaggaaggcaaaagcacagaacgc
gagcccagcctactgctgccccctagtgaccagtcagtggtgcacctggtgaagggagat
gagttggagctcgagtgcattgctgagggactacccactcccttgtatgagtggaccaaa
ctgcgtgagaaactacctgagaggaccaacataaagaattttgggaagctgctgaccctg
gctaaagtgaaggaagaggacgatggagtgtacaagtgcacagcaaagaacagtctggga
gagaagtcccacttattcagggtgtctgttgaagagccacctcgctgggccgaggggact
ccccaggatcagctggtcaccatcgggtcggacgtgcagatcaagtgtgccaccgctggc
agacccaggcccactgtcacctggaggatcaatggacagctcattggagatatgaccgtg
cctaacgggcgagtgtttgatgacactattatgctgcaccaggtccagcgcagcgacact
gctgtctaccaatgtcaggcctccaaccgccacggctccatcatggccaacgtcaacctc
atggtgctcaacatccgtcctttgatcctgacgaaagactacctggagtactcagcagtg
cagggcaaacacgtggtcttgtactgcaaggtcttcagctcgccaccagctcatattatc
tggacctcaggtgagaccggagctattgtggaaggcggacgattctctgtgcttgcggac
gacggctctctgttgatcaagagcgtggagggaggcgactcgggacagtacacctgccag
gcctccaactcagagggagtgacagacatcacggccaagctggagataaaagatccgact
cggattgttgagcccccacaggacttgaagattctgcgtggcacgatggcccaatttatt
tgccaagcggactatgacaggagcctccggagggagcttgagatcctttgggcgcgagat
ggcgaggagacatacctcaattccacagaagacgtgcggttttctgtagacgacgggatt
ctgcagatctccaacgtgagtcacagtgatgagggcttgtacttatgcatcgccaggacg
accttggaccaggacagagccactgcatatctcacagtactggatgtccctgaggcgccc
aagaacctggtgcttgcagagaaaagagggcgcagtgtcaggctaaaatggacacctggc
aaagaacacaacagtcccatcactgaattcgtcatcgagtacgaggagaaccagtgggac
cccgggaggtggcgtgagctggagagagtaccgggcaaccacgtgtctgcaatgctgatg
ctgcagggccacatcaactaccagttccgcgtctctgccatcaacgacctgggccaaggg
tcggccagcagacccacggagagatacaaaacccaggccacagagccagacaggaatcca
gaaaacatcaaaattgagggtcacctgccaaatcagatggacatcacttgggagccactg
ctgccggtggagcacaacggccccgggctggagtacaaggtgagctaccggcggttgggt
gtggacgaccactggacagagcagatggtcaagaggcacttgtttgtggtgaagaacacg
cccacgtttgtgccctatgagatcaagatccaagcccacaaccaggaaggttgggggcca
gagcccaaggtggtgactggctactcgggagaggacgtaccactggcgtctcctgaggat
gtgtctgtagagatggtgaataccactctgctgcgggtccgctggagcccagtccctgcc
aacatgctgcgtgggcacctgggggggtacaacgtgaactggtggaggatgcggagcctg
ctggcctcctctaaagctgcgggggagaaacagtcgatgcgtgtttttgggaatcgcaca
cacaccctggtccccggactgaggccctactcagagtatcgtctgagtgtcaacgtgttc
aacaagaaaggcaatgggccgagcagccttccagtgacattcacaactccacaagaagtc
ccagagaaaatgtcactcttaagagcaacgaacccccagagaacctccatcacactggtg
tgggccccgcctatggagaccaatggcatcctgacaggctacaggttgcagtaccagcag
atgaacgacacacagcacctgggccccctgcactccatgaacatcagccagcccgacgtc
acccactgggtccttgatggcctggaccgcttcagcgcttacaagttctacctgagcgcc
tgcacacaggtgggctgtggcccggccatcagcgaggagagcagcactgccgccgaagcc
cctgacttgaacccgaccgctgaggatttcacaccaacggcctttgtgacccccacagag
atcaatgtcgcttcaactaccaccacagactctactgtgaaaagcatcacaccagtagca
gctggcatccccacagggatgacgttgttgaatgtgagctactttgtaagtgacacgtat
gcaaaaatcagctggactgtgccgggagagcagaaggactccgagctttatgttgcgtat
atgaatcaccgtgagggcacctggaggaccccagaggcggtgagcgcgtctaaggctttc
cacctcattgacggcctggctcccgggagcgtgtacacggtgcgcgtcctggccagccgc
cgcctcgatagcgccgtaattttcgaggacgttatccacaccagcgagaaagatgccgac
cggcaggacgcgggggtctcctccagaggctggtttgtgggcctcatgtgtgttctgcct
ttggccaccctggctgcactgattggctgcttcgtgtccaagaaccgcggagggaagtat
gcagttaaggagaaagaagaccttcctgcagatgaggagtccaagggcccagacgagggg
accttctgtgaatacagtgacaacgaggagaagcccttgaagggaagcctgcattcgata
gacgggggcatcgaggtggcgacgggggaagacgacagcgatgagagcgtagaatacgat
gacgaggaggaccagttcaacgaggacggctcgtttatcggggagtactcaggacgcagg
cgcaggggctccgcggaggcgaacggaccctcttcctccgttgcgtga
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