Alosa sapidissima (American shad): 121713535
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Entry
121713535 CDS
T11137
Symbol
mlh3
Name
(RefSeq) DNA mismatch repair protein Mlh3 isoform X1
KO
K08739
DNA mismatch repair protein MLH3
Organism
asad Alosa sapidissima (American shad)
Pathway
asad03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
asad00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
121713535 (mlh3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
asad03400
]
121713535 (mlh3)
DNA repair and recombination proteins [BR:
asad03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
MutL homologs
121713535 (mlh3)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MutL_C
HATPase_c_3
HATPase_c
DNA_mis_repair
Motif
Other DBs
NCBI-GeneID:
121713535
NCBI-ProteinID:
XP_041954138
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Position
7:38446208..38506363
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AA seq
1169 aa
AA seq
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MIKYLPDEVKAKLRSGIAICSLQQCVEELVLNSIDASATCVAVKVDVEACKLQVVDNGLG
IDREDFDRVGNRYNTSKCSCLEDLENLRFYGFRGEAMASIISLSGLVEISSRTKLSTKTF
VKVFNSGQSVGVCEAETARPSAGTTVTICNFFCNMPVRKKCLDPVLEMERIRQRIEAISL
MHPSVSFTMKKECTGAMLVQLSKVKSIYYRFAQIHGLGRAQKLREVTHLYGQFEITGHIG
CEGHHNNNLQFLFLNRRLILKTCIHKLLKCILSKCATFNKQCSSPIVSQVASSPKERVGG
ELHGVYVININCSYSEYDVCLEPAKTLIEFKDWDSLLYCMEEGVKTFLKRESLLETMPEP
EASQGCLIPPLFCQQSAFSDIGNSNQLVCSDFVRGKTLASKSVLRRIAVDFTKMSGSSQP
CDKDSTECEMDAKVAIATKLELAFETSSQEGNTVLLNHSNLQDKQCNVSNSVSVNCEDAI
NDSVTHFDHEYKALNVNFQKCKANKVNGTEMTNSSSQICRQPFTADIAPLILEVTPSHKL
AVSYVASPLSKFRRLSGELDETEHQPRDVCSNHMTFVSETALAVKQDAHVANLLFPERKQ
HKTDNSLTFVGSVSKLHTFSGCRLNNRRKVSVATKLSNLKQAKIESCDSTTENVLNVIRN
KDICNWKQLAHSSIQNVDHGEQALDNTPLRPILPYCVEDSPSTPRYDYKTSENPDLSYSL
LRPYHTGSSTNTHNFPTTAPTPTIVELNPIDLCIPSTISPTYKLKNYEILLPRAANSKGY
HTDESQQRNVQIPTSDNWRAHYDYFAGKMVYINKVTGLSKYDTLSEEETKVSCMPDVTNA
AVRVLQRRVDTEATDGLSRLFAAWKNPVFIQPLDVALDVTSGVADHLPVPVHNIMLPYRF
TKDMITSMKVIHQVDKKFLACLVNTGNQKMCFNNKPKVHLANLLVLVDQHAAHERVRLEG
LVAESYEDDPLQLGQKKLCSSVVSPPLEVDIRQEDLRLLKSCQPLLSSLGLDMEFPHSDK
SCVLLRKVPACFLERENTKLRRGRLSVVKSLVEEYLREQIKSLRLTRRLQTTLPLTVHNV
LASQACHGAIKFNHSLSQEECRSLVRSLAACQLPFQCAHGRPSITPVVDLQYLDNEQMDT
SKPNLRKLKRMYNAWLIYGKKRSGEEKYV
NT seq
3510 nt
NT seq
+upstream
nt +downstream
nt
atgattaagtacttgcctgatgaagtgaaggcaaagcttcgttcaggcattgctatttgt
tctcttcagcagtgtgttgaggaacttgttctcaatagtattgatgccagcgcaacctgt
gtggcagtgaaggtggatgtagaggcttgcaagttgcaggtagtcgacaatggcctaggg
atagacagagaagattttgatagagtagggaacagatataacactagcaaatgcagctgt
ttggaggacttggagaatctgagattttatgggtttagaggagaggctatggcaagcatc
atctctctttctggtttggtagaaatatcatccaggactaagctttccacaaagacattt
gttaaggtcttcaacagtggacagagtgtgggtgtatgtgaggcagagacagccagacca
tctgcaggtacaacagttacaatttgcaacttcttttgcaatatgcctgtaaggaagaaa
tgtcttgaccctgtgctggagatggaaagaatcagacaaaggattgaagccatctctctc
atgcacccgtctgtctccttcacaatgaagaaggaatgtacaggagccatgctagtgcag
ttgtctaaagtaaaaagtatatattatcggtttgctcagattcatggcctagggagggca
caaaaacttcgtgaagttacacatttgtatggacagtttgaaattacaggacacattggc
tgtgagggtcaccataacaataatctacaatttctgtttctaaatagaaggcttatacta
aaaacatgtatacacaaattactgaagtgtatcctctccaaatgtgcaaccttcaataag
caatgtagcagtcccattgtctctcaggttgcttccagccctaaagagcgtgttggagga
gagcttcatggagtgtatgtgatcaacatcaactgcagttattcagagtatgatgtgtgt
ttggagccagctaaaacactcattgagtttaaagactgggacagtctcctgtattgcatg
gaggagggtgtcaaaacatttctgaaaagagagagtctacttgagactatgcctgaacct
gaagcctctcagggctgtttgatccctcctttgttttgtcaacagtcagctttttctgac
attggaaacagcaatcagcttgtctgcagtgacttcgtcagggggaagacactggcttca
aagtctgtcctccgaagaattgctgtggattttacaaaaatgagcggaagttctcagccg
tgtgacaaggattccacagaatgtgaaatggatgctaaagtggcaatagcaaccaaactt
gaactggcttttgagacatcatctcaagaaggaaacactgtattactgaatcattcaaat
ctgcaagataagcaatgtaacgtatcaaattcagtgtctgttaattgtgaagatgctatc
aacgatagcgttacacattttgaccatgaatacaaagcacttaatgtaaattttcaaaag
tgtaaggctaacaaagtaaatggaacagaaatgaccaacagctcaagccaaatttgcagg
cagcctttcactgccgacattgcacctttgattctagaagtcacacctagtcacaaattg
gctgtgtcatatgtagctagccctctaagcaaatttagaagattgtctggtgagctagat
gaaacagaacatcagcctcgagatgtatgtagcaatcacatgacctttgtcagtgagaca
gccttggcagtcaaacaggacgcacatgttgcaaaccttttatttcctgagagaaagcaa
cacaagacggacaactccctaacttttgtaggtagtgtgtcaaaactacacacattttca
ggttgtagattaaacaacagaagaaaagtatctgtcgccaccaagctttctaatttgaaa
caggcaaagatagaaagctgtgattctactacggagaatgttcttaatgtcatcagaaat
aaagatatctgtaactggaaacaattggcacattcttcaatacaaaacgtggaccatgga
gagcaagctttggataatacccctctgcgtcccattcttccttattgtgtggaagattcc
ccttccactcctagatatgattataaaacctcagaaaaccctgacctgtcttattcatta
ttaaggccctatcatactggttcctccactaatacccataactttccaacaacagcacca
accccaaccattgtggaactgaaccccatagatttgtgcattccctcaacaatttcccct
acttataagctcaagaattatgagatcctccttccaagagctgccaactcaaaaggatat
cacacagatgaatcacagcagagaaatgtacagatcccaacatcagacaactggcgggca
cactatgattactttgctgggaaaatggtttacatcaacaaagtaacaggactaagcaaa
tatgatactctgtcagaggaagagacaaaagtgtcctgcatgcctgatgtcaccaacgct
gctgtccgtgtgcttcagagaagagttgacactgaagcaaccgatggcctttcacgactg
ttcgccgcatggaagaatccagtcttcatacagccactagatgtggctttggatgtaacc
agtggagtggcagaccatctacctgtgccagtacacaacataatgttaccatatcgtttt
accaaggatatgatcacttccatgaaggtcattcatcaagtggacaaaaaattcctagct
tgtcttgtcaacacaggaaaccagaaaatgtgtttcaacaataaaccaaaagttcatcta
gcaaatcttctggtgttggtggaccagcatgcagctcatgagagagttcggttagagggt
cttgtggcagagtcatatgaggatgatcctctgcagctaggccaaaagaagctatgttcc
tctgttgtgtcaccacccctggaagtggacatcaggcaggaagacctcagacttcttaaa
tcctgccagcctcttctcagctctctgggactggatatggaatttcctcacagtgacaag
tcgtgtgtgttattgcggaaagttcctgcatgttttctggagagagaaaacaccaagttg
cgccgtggtagactctctgtggtcaagtctctagtagaggagtatctccgagagcagatt
aagtcgctgcgtttgacaagaagactacagaccaccctaccactaacagtacataatgta
ctagcatctcaggcctgtcatggagcaatcaaatttaaccatagtctaagtcaggaagaa
tgtcgtagtctggtgagatcccttgcagcctgccagctaccattccaatgtgctcatgga
cggccttccattaccccagtcgtggacctccagtacctggacaatgagcaaatggatact
tcaaaacccaatctacggaaattgaagagaatgtacaatgcttggcttatttatgggaaa
aaaagatcaggggaagaaaaatatgtatag
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