Alosa sapidissima (American shad): 121713647
Help
Entry
121713647 CDS
T11137
Symbol
hdac6
Name
(RefSeq) histone deacetylase 6
KO
K11407
histone deacetylase 6 [EC:
3.5.1.98
]
Organism
asad Alosa sapidissima (American shad)
Brite
KEGG Orthology (KO) [BR:
asad00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
asad01009
]
121713647 (hdac6)
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
asad03019
]
121713647 (hdac6)
04131 Membrane trafficking [BR:
asad04131
]
121713647 (hdac6)
03036 Chromosome and associated proteins [BR:
asad03036
]
121713647 (hdac6)
Enzymes [BR:
asad01000
]
3. Hydrolases
3.5 Acting on carbon-nitrogen bonds, other than peptide bonds
3.5.1 In linear amides
3.5.1.98 histone deacetylase
121713647 (hdac6)
Protein phosphatases and associated proteins [BR:
asad01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
121713647 (hdac6)
Messenger RNA biogenesis [BR:
asad03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Stress granule specific factors
121713647 (hdac6)
Membrane trafficking [BR:
asad04131
]
Autophagy
Aggrephagy
Other aggrephagy associated proteins
121713647 (hdac6)
Chromosome and associated proteins [BR:
asad03036
]
Eukaryotic type
Histone modification proteins
HDACs (histone deacetylases)
Class II HDACs
121713647 (hdac6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-GeneID:
121713647
NCBI-ProteinID:
XP_041954372
LinkDB
All DBs
Position
7:complement(22860610..22882192)
Genome browser
AA seq
1115 aa
AA seq
DB search
MDSGTDPSGPIVSKGSVRSPQPTDITTKRASNKGKGKRSTLQEARRKGRMDRSKGEEELS
NQLKNMDLHSQTKAAGTGLISSDIFTQYHCLWDTSHPECPERVTTVMDMAEKQGLLARCV
RVDPRVATEEELLLVHTKEYIELMTRTEKMTEEELKSLADTYDSIYIHPNSLQCATLAVG
AVLQLVDKVLTSELQNGFSIARPPGHHAQAGQMNGYCMFNNLAIAARYAQKHHGVKRVLI
VDWDVHHGQGIQYIFQEDPSVLYFSVHRYEQGAFWPHLKDSDSSAIGSGPGEGYNINLPW
NQTGMKDGDYLTAFHQLLLPVAYEFQPELVLVAAGFDSVVGDPKGEMSASPQCFAVLTHL
LKGLAQGRLVLALEGGYNLQSTAKGACACLKSLLGDSCPHLSTPVAPCKSALKSISETIT
ALYPYWTCLQTFEGGPLPQQDESDEDQPESQLTGLVYDQRMMEHHNMWDGHHPEQPMRIA
RIFSRHENLGLVNRCYSIPARLATEKELALCHSDEHIQKIKGTEGMKPRDLHRLGGEYNS
IYINNESYKCARLAAGACFNAAQAVLTGQVRNAAAIVRPPGHHAEADKACGFCFFNTAAL
TARYAQSLSPSHKPLRVLILDWDVHHGNGTQHIFEKDDSVLYISLHRYEDGTFFPNSEDA
DYDKVGEGKGRGFNVNIPWSGGKMGDSEYLAAFHHIVMPIAREFSPDLVLVSAGFDAARG
DPLGGYQVTPEGYAHFTHQLMTLAAGRVIIILEGGYNLTSISESMAMCTSMLLGDPSPRL
PSLPPPHPNAAISINNVLRAHAPYWSSLRMQIPQSLRLALPSPKTRGKRTPVGKDKKTSR
QSTPAKSPGQGFSPEAASPVASSQGTGHEESGLEDLTKGLLSLDLNTTTSANSSPSSVPV
GGARRKVKPSPQKASEMKKGASPHNVTSDNMQEEEEESKDNPQGDAQSTNEMQPAAETGT
AATATSDQDSVELEGACGTSNNIFIICGGEDMDSGAVQPLAWCPHLEALKPVPTTGINIQ
QPCDECGSEEENWLCLLCYKVLCGRFVNEHMVMHGAVSGHPLVLSFSDLSVWCYPCEAYI
DNKALYEAKNTVHVAKFGQDMPVPAAEKMGDGAGP
NT seq
3348 nt
NT seq
+upstream
nt +downstream
nt
atggattctggtaccgacccctccggacccatagtgtccaaaggttctgtcagatcgcca
cagccgacagacatcacaaccaaaagggcaagcaataagggtaaaggcaaaaggtccacc
cttcaggaagcaagaagaaaaggaagaatggacagaagcaaaggagaagaagagctaagc
aatcagctgaaaaacatggatttgcacagccagactaaagctgctggaacaggtctcatc
tcctcagacattttcacccagtaccactgcctttgggatacaagccatccagaatgcccg
gagagagtcactactgtgatggacatggctgaaaagcagggcctgcttgcccgctgtgtg
cgggttgatccaagagttgccactgaggaggagctgttgcttgttcacacgaaagaatat
attgagctcatgacgcggacagagaagatgacggaagaggagctgaagtctctcgctgac
acctacgactccatctacatccatccaaattctttgcaatgtgctaccttagcagtgggc
gctgtcctgcagctcgtagataaggtgctgacatcagagctccaaaatggcttctctatt
gccaggccacctggtcatcatgcacaggctggccaaatgaacggctactgcatgtttaat
aacctggcaatagcagcacgctatgctcagaagcatcatggggtgaaaagagtcttaatt
gtggactgggatgtgcatcatgggcaaggaatccaatacatttttcaagaggatccaagt
gtgctgtacttctccgtgcaccggtatgagcagggagcgttctggcctcaccttaaggac
tcggacagcagtgcgatcggcagcggtccaggagagggctacaacatcaacctgccctgg
aatcagacgggaatgaaagatggagactacctgacggcgttccaccagcttctccttcct
gtggcctatgagttccagccagagttggtgttggtggcagcaggttttgattctgtggtc
ggtgaccccaagggagagatgtccgccagtcctcagtgttttgctgttcttactcacttg
ctaaaaggtttagctcagggtagactggtgcttgcccttgagggaggatataatttgcag
tcgacagcaaagggtgcctgtgcctgcttgaagtcgttactgggggattcctgtccccac
ctcagtacgcctgtggctccgtgtaaaagtgccctgaagtccatctccgagaccatcact
gccctttatccatactggacctgccttcagacatttgagggaggccccctaccacagcag
gatgaatcagacgaggaccagccagaaagccagctcactggtctggtgtatgaccagagg
atgatggagcaccacaacatgtgggatggtcatcacccagaacagccaatgaggatcgct
cgcattttctcacgccatgagaacctgggactggttaaccgatgctacagcatacctgct
cgcctggccacagaaaaagagctggccctgtgtcacagtgatgagcacatccagaaaatc
aagggcacagagggcatgaagccccgagacctgcaccgtctgggaggagagtacaactcc
atctacatcaacaatgaaagctacaagtgtgcccgactggccgcaggggcctgcttcaac
gcagcacaggctgttctcactggacaggtgagaaacgctgcggccattgttcggcctcct
ggtcaccacgccgaggcggacaaagcgtgcggcttctgcttcttcaacacggcagcactt
accgcccgctacgcccagagcctctcgcccagccacaagccgctgcgtgtgctcatcctg
gactgggacgttcatcacggcaatggcacccagcatatcttcgagaaggatgacagtgtg
ctgtacatctcgctacatcgatatgaggatggcacgttcttccctaactctgaggatgcc
gactatgacaaagtcggggaaggcaaaggtcgtggcttcaacgtcaacattccctggagt
ggggggaagatgggagactccgagtacctggcagccttccaccacattgtcatgcccatc
gccagagagtttagcccagacctggtgctggtgtccgcaggcttcgatgctgcccgggga
gaccctctgggaggctaccaggtgaccccggagggctacgcccacttcacccatcagctc
atgaccttagcagccggaagagtgatcatcatcctagagggtggctataatctgacctcc
atctctgagtccatggctatgtgcactagcatgctactgggagacccttcgccacggctg
ccgtccctgccccctccacatcccaacgcagccatcagcatcaacaacgtcctgcgtgct
cacgccccctactggagctctttgagaatgcaaattccccagtccctccggctggcttta
ccttctcccaaaaccagagggaagcggacgcctgtcggaaaagacaaaaagacctcaagg
cagtcgactcccgccaaaagcccgggtcaggggttttcaccagaagcagcctcccctgtg
gcctcttcacagggcactggccatgaggagtcaggcctggaggacctcaccaagggcctg
ctctccctagacctgaacacaactacctcagccaatagcagcccgtcatctgttcctgtg
ggaggagctagacggaaggtcaagccaagtcctcaaaaagcatcagaaatgaagaagggt
gcatcaccccacaacgtgacctcagacaacatgcaggaagaggaagaggaaagcaaagac
aacccacagggggatgcacaaagcacaaatgagatgcagccagctgctgaaactggtaca
gcggccacagcaacaagtgaccaagacagtgtggaactggagggagcttgcggcacatct
aataatatttttatcatctgtggaggcgaagacatggattcaggtgcagtgcagcctctg
gcttggtgcccccatttggaggctctgaagccggtccccaccacaggcatcaacatccag
cagccatgcgacgagtgtggctcagaggaagagaactggctctgtctcctctgttacaag
gtactctgtggtcgcttcgttaatgaacacatggtgatgcatggcgcggtctctggccat
cccctggtgctgagtttctctgatctctctgtgtggtgctacccatgcgaggcctacatc
gacaataaggccctgtatgaagccaagaacacagtgcatgtggccaagtttggccaggac
atgcccgtccctgctgccgagaagatgggagacggagccgggccgtga
DBGET
integrated database retrieval system
