Alosa sapidissima (American shad): 121713705
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Entry
121713705 CDS
T11137
Symbol
nphp4
Name
(RefSeq) LOW QUALITY PROTEIN: nephrocystin-4
KO
K16478
nephrocystin-4
Organism
asad Alosa sapidissima (American shad)
Brite
KEGG Orthology (KO) [BR:
asad00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
03037 Cilium and associated proteins [BR:
asad03037
]
121713705 (nphp4)
Cilium and associated proteins [BR:
asad03037
]
Primary cilia and associated proteins
Nephronophthisis-related proteins
121713705 (nphp4)
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GFIT
Other DBs
NCBI-GeneID:
121713705
NCBI-ProteinID:
XP_041954484
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Position
7:complement(14899871..14997375)
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AA seq
1413 aa
AA seq
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MTDWREVFERTRAVPPHSQTARHSDIKRPSQGFQLVFKHLDGASIFQKPASVQLRVSFFD
TARQHFFGRTWRSSPHDATVASEDQGSSRVSFHEVVYFHSSLCLPYVVAVVELVEVVSLH
SQHATGCGFGILPLYSGATGTPSLSGNQRMPLYNGTPRALLLPSVRDVELNRHLTVMDGV
ELLYSFQTHPALLPIIHLFPQNTLVSGHTSIPGVVQLSDSTDWLRKPRVLKSVSCMLDRL
VLVLSPSLERFEQDLLHLLTVDSHNTQHRTQEGPTLVVQERRLHVGVHNGWTFLEGPQVL
VLELESAGGPRGRSGSFRQTSGGGLSSSSPVLALRGGVEMEMVAHPAFALVFQLEYVFSL
TASEGKLSTSTSRVAFLQCLGWAAWSPFSGDGQGAARAQLQLQAGATPNPFGVMVYSASC
TSHSTTEATEGGVHLSFQFSAREERPQSSPAGSRRGGLTKRKHGVSPARDESIQELQASL
SRSIQGPGLSMSQLAEASRHPTLRHSTGSPWQQSIPSRLHPSPLASAHQLSHVERFGVSS
IVHLEMSVKDVQDPSGSELLPQEVDEPPLQELTYTPVQAPVIMLGTRTTGLPSRSSRSSL
AYLFSASFPEVLDLHGQVAEVSDPSEPVTFNPQREEADPLQSNTLVLQFLAFSRISQTGV
PTDWPRCVHFTFQLYRFPPVSTQRLSLIGLQGKPTDDDPCILAVINKDGTVNTESPGLQL
RFTVGAEPVCPGERRSFLKYLAQHSLQINVWDSNSMQLIGCAAVELKHLLRQGRSAVQVV
HELEVITTEFIQDGSVASGHLSRHAVMSPINILTSVKGRLHLRLGNVGGPVERGSDISVP
SSVHVVKGCSSMQGFGGGSLFSSSVSQKNARNTARALRMVEVHGELMSLLQARGDRAGQV
DAEESRLRKLSRMAAVRQTEQQDGATEHKPYMWRREERQQLGRDLRVIEAYREQSKAEGI
ANMLSQAITTQHTLYASLGTVQFFEFLLKNPFSLPQTITIHSEDPELSVVVSTEEWRYLK
QMTKTSTPLEQDMFKLNEKTRALQVYLRPKEAVHIPLKYQTFVSTHTLPPQGLGPMRGDQ
THHTFQRLQPSAVSRKSIKVHFQGQDEKPVAICQVRVELTPHGVDQTFRFSHPEGTFLKK
AIRLPPWTPAPEEAPVLHVRCTDPNVICDTRAVAPGEPQDVYVKVAGCPSPQIKKFFITV
FTDRWLLAPAQIWQVYVHFLQRLDISCVTGQLTCQSLVLRGTQAMRKVKCHVSHPLELQV
DPCEVFVLPPRAVQDVQLRVRCHRTGSKFVQLSVVDVEQQQLVEYWLICITAHPPVISKA
FEICLAVGGGRGSTKKITFTXPYPNTRTFHLLSDRTDLLQFKEDTFQVDGGQTYSIGLRF
APSQSPGQEEILIYVNNQEELNEETFCVKVIYR
NT seq
4242 nt
NT seq
+upstream
nt +downstream
nt
atgacagactggagagaagtgtttgaacgaaccagggcggttccaccccacagccagacg
gcccgacactctgacattaaaagaccgtcccaagggtttcagctcgttttcaagcacttg
gatggagcctccattttccagaagccggccagcgtccagttgcgtgtttccttcttcgat
acagcccgccagcacttcttcggaagaacttggaggagttcaccccatgacgccactgtt
gcttcggaagaccagggtagcagcagagtttcttttcatgaggtggtctacttccactcc
tcgctgtgcctgccctacgtggtggcggtggtggagctagtggaggtggtgtctctccac
tcccagcatgccacaggctgtggcttcgggatcctcccgctctactctggtgccacagga
acgccatcgctatctggaaaccaaaggatgcctttgtacaatgggacgcctcgggccttg
ctccttcccagtgttcgagatgttgaattgaacaggcacttgacagtgatggatggcgtt
gagctcctctactccttccaaacccaccctgccctccttcccatcatacatcttttccct
cagaacacgctggtgtcgggtcatacaagcatccctggggttgtgcagctgtctgacagc
acagactggctgcgtaagccccgtgtgctgaagagtgtgtcctgcatgctggacaggctg
gtgctggtgctgtccccctctctggagcgctttgagcaagacctgctgcacctgctcaca
gttgacagtcataacacgcagcatcggacgcaggagggcccgaccctagttgtccaggag
aggaggctccacgtgggcgtccacaacggctggaccttcctggaggggccgcaggtgctg
gtcctggagcttgagtcagcggggggaccccgtggtcgcagcggcagcttcaggcagacc
tctgggggaggcctcagttcatcctctcctgtgttggcgttgaggggtggcgtggagatg
gagatggttgcccatccagcgtttgccctcgtcttccagctggagtacgtcttctccctg
accgcctctgaggggaagctgtcgacgtccacctctcgcgtggccttcctgcagtgcctg
ggctgggcagcctggagccccttctctggggacggacaaggtgctgcccgggcgcagctg
cagctgcaggctggagccacacccaacccctttggtgtcatggtctacagcgcgtcctgc
acaagccacagcaccactgaggccacagaagggggtgtccacctgagcttccagttctct
gcccgggaggagaggccccagtccagcccggcagggtccaggagaggtggcctgaccaag
cgcaagcacggcgtgtctccagcgcgcgacgaaagcatccaggagcttcaggcctccctg
tcgagatcgatccagggcccagggctctctatgtctcagctggctgaagcttcacgccac
ccgactctcagacactccacggggtctccatggcaacagtctattccctctaggctccat
ccctccccattggcttcagcccaccagctgtcacatgtggaacgttttggcgtgagcagc
atagtgcatctggaaatgagtgtaaaggacgtgcaggatccatctggttcagagcttctg
cctcaagaggtggatgaaccccccctgcaggagctaacctacacaccagtacaggcacca
gtcatcatgctgggcacacggaccacaggcctgccatcacggagttctcggagttcgctg
gcatacctgttctccgctagtttccctgaggtgctggacctacatgggcaggtggccgag
gtctcagaccccagcgagcccgtaacctttaacccccagagggaggaggccgacccgctg
cagagcaacactcttgtcctgcagttcctcgccttctccagaatctctcagacaggtgtg
ccgactgactggcctcgctgcgtccacttcaccttccagctctaccgcttccctcctgtc
agcacccagcgcttgtctctgattggtctacaggggaagcccacagatgatgacccctgc
atcctcgccgttatcaacaaggacgggacagtgaacacagagtcccctgggctgcagctg
cggttcactgtgggggcagagcctgtgtgtccaggagagaggcggagcttccttaagtac
ctggctcagcactctctgcagatcaacgtgtgggacagcaactcaatgcagctcattggc
tgcgctgctgtggagctcaagcacctgttgaggcagggccgctctgcagttcaggttgtt
catgagctggaggtcatcaccacggagttcatccaagatggcagcgtggcaagtgggcac
ctctcgaggcacgcagtcatgtcacccatcaacattctcacctccgtcaagggcagactg
cacctgcgcctgggaaacgtgggtggtccagtggagcggggttcggacatctctgttccc
tcctctgtgcacgtggtcaagggctgcagctccatgcagggctttgggggaggaagcctc
ttcagctccagcgtctcacagaagaatgcgcgtaacacagcccgtgccctgcgcatggtg
gaggtgcatggtgagctgatgtcgctactgcaggctagaggggatcgcgctggccaggtg
gacgcagaggagagcaggctgcgcaaactcagcaggatggctgcagtgaggcaaaccgaa
cagcaggacggcgccactgagcacaaaccctacatgtggcgtcgtgaggagcgccagcag
ctgggtcgtgatctgcgtgtgattgaggcgtaccgtgagcagagcaaagccgagggcatc
gccaacatgctgagccaggccatcaccacccaacacaccctctacgcctctctcggaacc
gtgcagttcttcgagttcctgctcaagaaccccttcagcttgccacagaccatcaccatc
cacagtgaagacccagagctcagtgtggtggtgagcacagaggagtggcgctatctaaag
cagatgaccaagacctccacaccgctggagcaggacatgttcaagctgaacgaaaagacc
cgcgccctgcaggtgtacctgcgccccaaagaggccgtccacatccccctcaagtaccag
acctttgtgtcaacacacaccctacccccacagggactgggccctatgagaggtgaccag
actcatcacacgtttcagaggctgcagcccagtgccgtcagcaggaaatccattaaggtg
cacttccagggtcaggatgagaagccagtggccatctgccaggtgagggtggagctgact
cctcacggtgtcgatcagaccttccgcttctcccatccagagggcaccttcctgaagaaa
gccatccgcctgccgccctggacacccgccccagaggaagctcctgttctccatgtgcgc
tgcacggaccccaatgtcatctgtgacaccagagcagtggccccaggggagccccaggat
gtgtatgtgaaggtggccggctgtccaagtcctcaaataaagaagttctttatcactgtg
ttcactgaccgctggcttctagccccagctcaaatctggcaagtgtatgtccacttcctt
cagcgcttggacataagttgcgtgactggccagctcacctgtcaatcactggtactgagg
ggcacccaggctatgaggaaggtgaagtgtcacgtgtcccaccctctggagttacaggtg
gacccgtgtgaggtgtttgtgctgcccccgcgggccgtgcaggacgtgcagctgagggtg
cgctgccacaggacgggctccaagttcgttcagctcagtgtggtggatgtggagcagcag
cagctggtggagtactggctgatctgcatcaccgcacacccccccgtcatctccaaggcc
tttgaaatctgcctggcggtgggcggaggacgaggcagcaccaagaagatcacgttcacc
nacccgtaccccaacacgcgcaccttccacctgctctctgaccgcaccgacctgctgcag
tttaaagaggacacctttcaggttgacggaggtcagacgtactccattggcctgcgtttc
gccccaagccaaagccccggccaagaagagattctcatctacgtcaacaaccaggaggag
ctcaatgaggagaccttctgcgtcaaggtcatctacagatga
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