Alosa sapidissima (American shad): 121714024
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Entry
121714024 CDS
T11137
Symbol
ddx52
Name
(RefSeq) probable ATP-dependent RNA helicase DDX52
KO
K14779
ATP-dependent RNA helicase DDX52/ROK1 [EC:
5.6.2.7
]
Organism
asad Alosa sapidissima (American shad)
Brite
KEGG Orthology (KO) [BR:
asad00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
asad03009
]
121714024 (ddx52)
Enzymes [BR:
asad01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
121714024 (ddx52)
Ribosome biogenesis [BR:
asad03009
]
Eukaryotic type
90S particles
Helicases
121714024 (ddx52)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
P-loop_SecA
NACHT
SecA_DEAD
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
121714024
NCBI-ProteinID:
XP_041955087
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All DBs
Position
7:19367727..19369980
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AA seq
623 aa
AA seq
DB search
MGSRLHAGKMDTHDLFRRLGAGTKFDFQRFGKDAERFKVLRPQPKKGSSDPLTKIDFFSS
GTHDIVNDEDEESDLECEQDSKSVKRKLKDEGKNSDSSQKKMKKKDKTSGVTEDESIQWI
SSSEKKPGDPKEGKDQLSVKRLKQLHQEKINQARGQNKIHVHGTDIPDPVCTFDELQKEY
QLDSKVLQNILTGGYESPTPIQMQAIPVMMHKREILACAPTGSGKTVAFCLPVITNLRKP
VNKGFRALVISPTRELAHQTYKELLRLVDGTGLRVHIIKKKDTVQKQGPKSKKVFDILVS
TPNRLLYLLNQDQPALDLSKVEWLVVDESDKLFEDGKTGFREQLAAIFQACSSPALRRAF
FSATCAPDVEKWCKLNLDNLVVVNIGARNSAAETVEQELLFVGAESGKLLAFRNLIKKGL
MPPVLVFVQSIERARELFHELVYEGINVDVIHADRTQQQRENVVKNFRSGKIWVLICTAL
LARGIDFKGVNLVVNYDFPTSAIEYIHRIGRTGRAGHKGKAITFFTEDDKPLIRSIATVI
KQAGCPVPDYMVGFKKLETKQKRQLLKNPPKRQTIRTTPRFLTAKNKGKKRKRKGVKKAD
GKKTEAGAAAGAPKGVVTSQKDH
NT seq
1872 nt
NT seq
+upstream
nt +downstream
nt
atgggcagtagattgcacgctggcaagatggacacacacgatctgtttaggaggcttggc
gctggaactaaattcgattttcaaaggtttggaaaagatgctgagcgatttaaggtgttg
agaccacaaccgaagaaaggttctagtgatcctctaacaaaaatagacttttttagctct
ggaacccatgatattgtgaatgatgaggatgaggagagtgacttggaatgcgaacaggac
tcaaaatctgtcaaaaggaaattgaaagatgaagggaaaaattcagattcatctcagaaa
aagatgaagaaaaaagacaaaacctctggagttacagaggatgagtcaatacaatggatt
tcctcctcagaaaagaagcctggtgatccaaaagagggcaaggatcagctgtccgtgaag
agactcaagcagttgcaccaggagaagatcaatcaggcccgaggccagaacaagatccac
gttcatgggaccgatatcccagatccagtctgtacttttgatgagctgcagaaagaatac
cagctggattctaaagtgcttcagaacattctcacaggtggctacgaaagcccaacacct
atccagatgcaggccattcctgtcatgatgcacaaacgagagatccttgcatgtgcgccc
actggctcagggaagacggtggctttctgtttgcctgtcatcacaaacctgcgcaagcca
gtcaacaaaggcttccgagccctggtgatctcccccacacgtgagctggcccatcagact
tacaaggagcttctcaggcttgtcgatggaacaggtctcagagtgcacatcatcaagaaa
aaggacacagtccaaaaacaaggccccaaatctaagaaggtcttcgacatactagtaagc
acgcccaaccgtctcctctacctgctgaatcaggaccagccagccttggacctcagcaag
gtggagtggctggtggtcgatgagtcagacaagctgtttgaggacggcaagactggcttc
agagaacagttggctgccatcttccaagcgtgctcctcgccagccctccgcagagcgttc
ttcagtgccacatgtgccccggacgtggagaaatggtgcaagctcaacctggacaatctc
gttgtggtcaacattggcgccaggaactctgctgctgagactgtagagcaggagctgctg
tttgtgggcgccgagagcgggaagctgctggcattccggaacctgataaagaaaggcctc
atgcccccggtgctggtgtttgtgcagtccatcgagcgtgcccgtgagctcttccacgag
ctggtctacgagggcatcaatgtggatgtcattcacgccgaccggacgcagcagcagcgg
gagaacgtggtgaagaacttccgctcagggaagatctgggtgctgatctgcaccgcactt
ttagccagaggcatcgacttcaaaggggtcaacctggtggtcaactacgactttccgacc
agcgccatcgaatacattcaccgcattggccgcacaggaagagcaggccacaagggtaaa
gccatcacatttttcacagaggatgacaaacccctcattcgcagcattgctacagtcatc
aaacaggcgggatgccctgttcccgactacatggtggggttcaagaaactggagaccaaa
cagaagcgacagctgctgaagaacccgcccaagagacaaacaatccgcacaaccccacgg
ttcctcactgcgaagaacaaaggcaagaaaagaaagaggaaaggggtgaagaaagctgac
gggaagaaaactgaggctggggctgctgctggtgcacccaagggtgtggtgacatcacaa
aaagaccactga
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