Alosa sapidissima (American shad): 121714108
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Entry
121714108 CDS
T11137
Name
(RefSeq) E3 ubiquitin-protein ligase PDZRN3-B-like
KO
K15682
ligand of Numb protein X 3/4 [EC:
2.3.2.27
]
Organism
asad Alosa sapidissima (American shad)
Brite
KEGG Orthology (KO) [BR:
asad00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
asad04121
]
121714108
Enzymes [BR:
asad01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
121714108
Ubiquitin system [BR:
asad04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Ligand of Numb proteins
121714108
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PDZ
PDZ_6
PDZ_2
zf-C3HC4_2
zf-C3HC4
zf-RING_UBOX
zf-RING_2
zf-C3HC4_3
zf-C3HC4_4
zf-RING_5
zf-TRAF
Prok-RING_4
Sina_ZnF
zf-rbx1
PDZ_Tricorn
TRAF3_RING
U-box
DUF3439
Motif
Other DBs
NCBI-GeneID:
121714108
NCBI-ProteinID:
XP_041955223
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All DBs
Position
7:complement(32253516..32308200)
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AA seq
1136 aa
AA seq
DB search
MGFDLDRFSAIVDPDFKCNLCDKVLEDPLTTPCGHVFCAGCVIPWVVQQNSCPVKCQRVS
TKELNHVLPLKSLILKLDIKCDNYARGCTRLVALQHLAEHTDMCDFSPAKCRNKGCNEVL
NLKDMDSHMRETCEYRPVEICENGCGLMLLHKDQNTDDHCCLKALKAHNSSLQVKIASLE
KELKRQSLRAISREKSLLAQLSAVHSELQMTALKYQRKFAEYNARLDSLSKSRTPAFKDG
GTRSLKVILHRSSGSLGFNIMGGRSCGDPEEEHLTEGIFVSKVVENGPADKEGGLHVHDR
IMEVNGRDLSKASHDQAVEAFHLAREPVEVQVLRRTSGTHTPTAAAMVSMSGRPACNHRG
VDSSTQTDITLEHISTLTQMPASSLGPLAMSPMPMLGEYLLPKDCMPNCDCFYSSEYLEG
IQQELDKEELEYEEVDLQRMSTQDKLGLTLCYRTDEDETGVYVSEIDPNSIAAKDGRIRE
GDRIIQINGVEIQTHEDAVALLACEKSRNVCLLMARPECQLDGGWLEDDRNDFLDGLHMD
MLEEQHHQAMQYTASMLQQNMHTRHAGMHDTVAILSHHHEKDSGVGRTDDSTRNDESSEQ
ENLPDDTGLTSAVLLGDPHAVRAYSQDTLGSGGDGDAHLSNDSFFSADADADSLGLLEDE
CEHFRELLELKYLVRGSGGGQGYGGGGPWQGAHPGVGMGSVVMAVDPELEFLNAELRHIE
LECQSIVHAHQMQQLHGQVCGGGGDVGVKGGGGGGGGGGDLGISGAAEPWLHRNGLHRTD
ARRTELRGVKIEPPDDADVDDGGLDKDSSSAYNTGESCRSSSTPGPSTLELSSSTSSTQR
HGSDEPAKHKPDCRGSKHPLSPIRESSSPSRSRLAGKPTKATATTTTTAAGSRLGEVAPA
ESRSSVKSPSRSPYKHAHIPAHAQHYQSYMHLVQQRSAVEYTQSQSSLVSACCGERDSPR
PSESRGGAGSGAKAEWKVKVRSDGTRYITKRPTRGRLLRERALRICEERCGVTTDDDAAS
ELKMGRYWSKEERKQHANRAREQRQRREMVKQSRAEATGPRDATTATGGVRGSSGGEGTD
DKREPDIIELSHKKMMRKRNRRIFDNWMTIQELLAHGTRSPDGTRVYNSLLSVTTV
NT seq
3411 nt
NT seq
+upstream
nt +downstream
nt
atgggatttgatttggatcgcttcagtgctattgtggaccctgactttaaatgcaacctg
tgtgataaagttttagaagacccgctgacaactccgtgcgggcacgtcttctgtgccggc
tgcgtaattccctgggtcgtgcagcaaaacagttgtcccgtgaaatgtcagcgtgtctct
actaaagaactaaaccacgtattgcctctaaaaagtcttatcctgaaattggacataaaa
tgtgacaactatgcaagaggctgcacgcgactggtggcgctccaacatctggccgagcat
accgacatgtgcgacttttctccagcgaaatgcagaaacaagggctgtaatgaagtgctg
aatttgaaggatatggattcacatatgcgggaaacatgtgagtacaggccggtggaaatt
tgcgaaaatggctgtggattgatgctgctgcacaaagaccagaacacggacgatcactgt
tgtttgaaagctctcaaagcgcacaacagctcacttcaagtgaaaatagccagcttggag
aaggaattgaagagacaatcgttgagagctatcagcagagagaaatctttacttgctcaa
ctctctgcggttcacagcgagcttcagatgactgccttgaaatatcagaggaaatttgcc
gagtacaacgcacggcttgattcactttccaagagcagaacccctgccttcaaggatggg
ggaaccaggagtctcaaagtgattctgcatcgatcatctggatctttgggcttcaatatc
atgggtggcagatcctgtggggatcctgaagaggagcatttgactgaggggatatttgtg
tcaaaggtggtggagaatggcccagcagacaaagagggtggtctgcacgttcatgacagg
attatggaggtgaatggcagggacctgtccaaggcatcccatgaccaggctgtggaggcc
ttccacctggccagagagcccgtggaggtgcaggtgctgcggcggacgtctggcacacac
acaccgacagcagcagcaatggtgtccatgtctggcagaccagcctgcaaccacagagga
gtggacagcagcacacagacggacatcaccctggagcacatctccactctcacccagatg
cctgcctcttccctggggcccttggccatgtcccccatgcctatgctgggggaatacctg
ctacccaaagattgcatgccaaactgtgactgtttttactccagcgaatatctagaaggc
attcagcaagagcttgacaaagaggagctagaatatgaggaggtggatctgcagagaatg
agcacccaagacaagctgggtctgacattgtgctaccgcactgacgaggacgagactggg
gtttacgtcagtgagattgatccaaacagtattgcagcaaaagatgggcgcattcgagaa
ggtgacagaatcattcagataaatggcgtggagatccagacgcatgaggatgcagtggcc
ctgctggcctgcgagaagagcagaaatgtgtgtcttctcatggctcggcccgagtgccag
ctggatggaggctggttggaggacgacaggaatgacttcctggacgggctgcacatggac
atgctggaggagcagcatcaccaggccatgcagtacacggccagcatgctgcagcagaac
atgcacactaggcacgctgggatgcatgacaccgtcgccatcctgtctcaccaccacgag
aaggacagtggcgtgggccgcacagacgatagcacccgcaacgacgagagctccgagcag
gagaacttgcccgacgacactggtctgacctcagccgtgctgctgggcgacccccacgcg
gtgcgggcctacagtcaggacacgctgggaagcggcggagacggagacgcgcacctgagc
aacgactccttcttctcggccgacgccgacgcagactccctgggcctcctggaggacgag
tgcgagcacttccgcgagctgctggagctcaagtacctggtgcggggcagtggcgggggt
cagggttacggcggcggtggcccgtggcagggcgcccaccccggcgtgggcatgggcagc
gtggtgatggccgtcgacccggagctggagtttctgaatgccgagctgcggcacatcgag
ctggagtgccagagcatcgtgcacgctcaccaaatgcagcagctgcacgggcaggtatgc
ggcggaggaggtgatgtaggtgtaaaaggcggaggaggaggaggaggaggaggaggcgac
ctcggcatcagcggtgctgccgagccctggctccatcgcaatggactccacaggacggac
gcacggcgcactgagctcaggggtgtgaagatagagcctccagacgacgcagacgtcgat
gacggcgggctggacaaggacagttccagcgcctacaacacgggcgagagctgccgcagc
agcagcacgccgggccccagcaccctggagctgtcctcctccaccagttccacacagaga
cacggcagtgatgagccggccaaacacaagcctgactgcaggggctccaagcacccgctc
tcgcccatccgggagtccagcagcccctcccggagccgtctggcgggtaagccgacaaag
gccacggcgacgacgacgacgactgcggcagggagcagactgggcgaggtggcacctgcg
gaatcgaggagctcggtgaagtcaccgtcgcgctctccttacaaacacgcgcatatcccc
gcgcacgcgcagcactaccagagctacatgcacctggtccagcagcgctcggccgtggag
tacacccagagccagagcagcctggtcagcgcgtgctgcggggaacgcgacagccctcgg
ccctccgagtcccgcgggggtgctggcagcggggccaaggccgagtggaaggtcaaggtg
cggagcgacggcacgcgctacatcaccaagcgtccgacgcgcgggcggctgctgcgcgag
cgcgccctgcgcatctgcgaggagcgctgcggcgtcaccacggacgacgacgccgccagc
gagctcaagatgggccgctactggagcaaggaggagcgcaagcagcacgccaacagagcc
cgcgagcagcgccagcgccgcgagatggtcaagcagagccgcgccgaggccacagggccg
cgagatgcgaccaccgccaccggtggtgtcagggggagcagcggaggagagggaacagac
gacaagagggagcccgacatcattgagctcagccacaagaagatgatgcggaagaggaac
aggaggatcttcgacaactggatgaccatccaggagctcttggcgcatggtacgaggtcg
ccggacggcacacgggtgtacaactcgctcctctctgtcaccacggtgtag
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integrated database retrieval system
