Alosa sapidissima (American shad): 121714695
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Entry
121714695 CDS
T11137
Symbol
zfr
Name
(RefSeq) zinc finger RNA-binding protein isoform X1
KO
K13203
zinc finger RNA-binding protein
Organism
asad Alosa sapidissima (American shad)
Brite
KEGG Orthology (KO) [BR:
asad00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
asad03041
]
121714695 (zfr)
Spliceosome [BR:
asad03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA binding proteins (RBPs)
121714695 (zfr)
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
DZF_N
DZF_C
zf-met
zf-C2H2_jaz
DUF4484
zf-U1
Motif
Other DBs
NCBI-GeneID:
121714695
NCBI-ProteinID:
XP_041955628
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All DBs
Position
8:13520203..13546683
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AA seq
1103 aa
AA seq
DB search
MIPICPVVSFTYVPGRLGEDAKMATGNYFGFTHGAAAQYSQQPAAGVAYTHPTTVASYTV
HQAPVAAHTVAAAYAPTAATVAVARPAPVAVAAAATAAAYGGYQPAHAATDYAYAAQRQP
EVPPPPPPVTSQNYQDTYSYVRSTAPTMAYDSKQYYQQPTATAAVAAAAQPQPSVAESYY
QTAPKTGYTQGVTPYTQTQQTRQVTAIKPATPSPATSTFSIYPVSSAVQPVAAASVVPSY
SQSPTYSTNAVTYSGTSYSGYEAAVYSAASSYYQQQQQQQQQKQAVAAAAATAAWTGSTF
TKKTPFQNKQLKPKQPPKPPQIHYCDVCKISCAGPQTYKEHLEGQKHKKKEAALKVSQSS
SSSGAGGTGSSARGTQNQLRCELCDVSCTGADAYAAHIRGAKHQKVVKLHTKLGKPIPST
EPSVVTQTSSATTAGPSKASAGGSASAGGSGAGGGGAMGTSVQSPAPASAAGAANSSYLK
PISMVNSASTAAAAAVQGKSPAVSGLPTNGSVVKKANTPKINFVGGSKLQTTGVKADDSK
AETAKPAPASLAAQSPDMKIESSDSLSAQSALAALQSDVQPVGHDYVEEVRNDEGRVIRF
HCKLCECSFNDPNAKEMHLKGRRHRLQYKKKVNPDLQVEVKPSIRARKIQEEKMRKQLQK
EEYWRRREEEERWRMEMRCGRYEEDMYWRRMEEEQHHWDDRRRMPDGGYPQGPPGPPGLL
GVRPGMPIPQPQGPVPLRRPDTSDDRYVMTKHAAIYPSEEELQAIQKIVSITERALKLVS
DIITDQDKGKEEDKEKEKEKEKEKKEIPKDRALKGVMRVGVLAKGLLLRGDKNVNLVLLC
SEKPTKNLLTRIVEHLPKQLTLVTPEKYEVKGSIQEAAIILTSGAEPKMQVTITLTSPII
REENARDGDVTSGMVKDPADVLDRQKCLDALAALRHAKWFQARANGLQSCVIIIRILRDL
CQRVPTWSAFPSWAMELLVEKAISSASGPLSPGDALRRVFECISSGILLPGGPGLIDPCE
KNPTDTLAAMEEQQREDITSSAQFALRLLAFRQIYKVLGMDPLPQMNARFNVRNNRKRRR
DNSDGTDGFEAEGKKDKKDHEGF
NT seq
3312 nt
NT seq
+upstream
nt +downstream
nt
atgattcccatatgtccagtagtctccttcacctatgtgcccggccggctaggtgaagat
gccaaaatggctaccggcaactattttggatttacccatggtgctgctgcgcagtacagt
cagcagccggccgctggggttgcctacacccaccccaccacagtggccagctatactgtg
caccaagcaccagtggcggcccacacggtggcggcagcatatgccccaacggccgccaca
gttgccgtagccagacctgcgcccgttgccgtagccgcggcggctacggcagcggcgtat
ggtgggtatcagccggcgcacgcggccaccgattacgcctacgctgcccagcggcagccc
gaggtcccaccgccccctcccccggtcacgtcccagaactaccaggacacgtattcgtat
gtgcgttccacggctccaaccatggcttacgacagtaagcagtactaccagcagcccaca
gccaccgccgcagtggcagctgccgcccagccacagcccagcgtggcagagtcctactac
cagacagctccaaaaaccggttacacgcagggagtcaccccctacacccagacccagcag
acgcgtcaggtgaccgccatcaagccagccacccccagccccgccacctccaccttctcc
atctacccagtatcctcggcggtgcagccggtcgccgccgcctccgttgtcccgtcctac
tcccagagtcccacctacagtactaatgcagtcacctattcaggtacatcatactcgggt
tatgaggcggccgtgtactccgccgcctcctcttactaccagcagcagcagcagcaacag
cagcagaagcaggcggtggcggctgccgcggcgacggccgcctggaccggcagcaccttc
accaagaagacgcccttccagaacaagcagctgaagcccaagcagccgcccaagccgcca
cagatccactactgcgacgtttgcaagatcagttgcgccggcccgcagacctataaggag
cacctggagggccagaagcacaagaagaaggaggcagccctcaaggtctctcagagcagc
agcagcagcggagcgggcggcaccggcagctcggcccgcggcacacagaaccagctgcgc
tgcgagctctgtgacgtctcctgcactggcgccgacgcctacgccgcgcacattcgcggt
gccaagcaccagaaggtcgtcaagctacacaccaaactgggcaagcccatcccctccaca
gagcccagcgtggtcacccagacctccagcgccactacagcggggcccagcaaggcctcg
gcgggcggctctgcgtcggcgggcggctccggtgcgggcggaggcggggccatgggtacc
agcgtgcaatctcctgctccagcgtctgcggcgggcgccgccaactcgtcctacctgaag
cccatcagcatggtgaacagcgccagcacggcggcggccgccgcggtgcagggcaagagc
ccagcggtcagtggcctgcccaccaacggcagcgtggtcaagaaggccaacactcccaag
atcaacttcgttggaggaagtaagttacagaccacaggtgtcaaggccgatgactccaaa
gcagagactgcaaaacctgccccagcctcattggctgcacagtctccggacatgaagata
gagtcctctgattcgctgtcggcgcagtccgccctggctgccctgcagagcgatgtccaa
ccagtcggacacgactatgttgaagaggtacgtaacgatgaaggcagggtgattcgcttt
cattgcaagctgtgtgaatgtagtttcaacgatccaaacgccaaggagatgcatttaaag
ggtcgaagacatcgtcttcagtacaagaaaaaggtcaacccagatctccaggtggaggtg
aagcccagtatccgagcacgcaaaatccaggaggagaagatgaggaagcagctgcagaag
gaggagtactggaggaggagagaggaggaggagcgctggaggatggagatgaggtgtggg
cggtacgaggaggatatgtactggcgacgcatggaagaggagcagcaccactgggacgac
cggcgccggatgcccgacggaggctacccccagggcccgcccggcccaccggggctcctg
ggcgtgcgacccggcatgcccatccctcagccacagggcccagtgccccttcgccggccc
gacacctcggatgaccgttacgtcatgaccaaacacgcggccatctacccctccgaggaa
gagctgcaggccatccagaagattgtgtccatcactgagcgggctctcaagcttgtgtcc
gacatcatcacggaccaagacaagggcaaagaggaggacaaggagaaggagaaagagaag
gagaaagagaagaaggagatccccaaggaccgagctcttaagggtgtaatgagagttggc
gtgttggccaaaggcctgctcctccgtggagataagaatgtgaacctggttctcctctgc
tccgagaagcccaccaagaacctgctgacccgcatcgtggagcaccttcccaagcagctc
acgttggtgacacctgagaagtacgaggtgaagggctctatccaggaggcggccatcatc
ctcacctccggcgccgagcccaagatgcaggtgacaatcaccctgacgtcgcccatcatc
cgagaggagaacgcccgggacggagatgtaacctcgggtatggtgaaagacccagcggac
gtcttggacaggcaaaaatgccttgacgctctggctgctctacgccacgctaagtggttc
caggctagagctaacggactccagtcctgtgtcataatcattcgcattctacgggacctg
tgtcagcgagtgcccacgtggtctgcctttccaagctgggccatggagctcctggtggag
aaagccatcagcagcgcgtctggccccttgagccccggagatgccctgcgtcgagtcttt
gaatgtatttcctccggcatcttgctccctggtggtcctgggttgattgacccatgcgag
aagaaccccacagacacgttggcagccatggaggagcagcagagagaggatataacctca
agtgcccagtttgccctaaggctgcttgcattccgccagatctacaaagtcttgggcatg
gacccactgccccagatgaacgcccgcttcaacgtgcgcaacaaccgcaagcgccgacgc
gacaacagcgacgggacggacggcttcgaagcagaggggaagaaggacaagaaggaccac
gaaggcttctaa
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