Alosa sapidissima (American shad): 121714802
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Entry
121714802 CDS
T11137
Symbol
tmc1
Name
(RefSeq) transmembrane channel-like protein 1
KO
K21988
transmembrane channel-like protein
Organism
asad Alosa sapidissima (American shad)
Brite
KEGG Orthology (KO) [BR:
asad00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
asad02000
]
121714802 (tmc1)
03037 Cilium and associated proteins [BR:
asad03037
]
121714802 (tmc1)
Transporters [BR:
asad02000
]
Other transporters
Pores ion channels [TC:
1
]
121714802 (tmc1)
Cilium and associated proteins [BR:
asad03037
]
Other cilia and associated proteins
Stereociliary proteins
121714802 (tmc1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TMC
COX16
OAD_gamma
Motif
Other DBs
NCBI-GeneID:
121714802
NCBI-ProteinID:
XP_041955801
LinkDB
All DBs
Position
8:complement(23805819..23822146)
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AA seq
941 aa
AA seq
DB search
MLLRVMHFFGGIENEDYNTDYNEDTDREAKRKRGRRKKGERENKRKAKKGGSTGISGIYT
QEQSEKERQRRKARRHKDKEEEKTGIEEDGEEVDNDIQSQRKNGRNGKAKKLKEEKEEEN
RNHKRQRPSKTDEEITASKKKAKKKQEDEPQKTDKGKKKRKKVETSSESSEVEELAGEEE
EEEEEKEMVVGVLTPEELEKLKEAVDERKKLITTLRGKPWPMMKKLQTLKESQEFVEKYE
GALGRGRGRKLYAYKVMMQKKWMKFLRDFENFKTACIPWEMKIKDIESHFGSSVASYFIF
LRWMYGINTILFGLTFGLVMVPEALMGRPYGSIPRKTVPRADETSAMDFAILWDFGGFAK
YSVLFYGYYNNQRTVGWLKFRMPLSYFLVGVGTVAYSYMVVIRKMARNANEQGGGDDTSF
NFSWKMFTSWDYLIGNPETADNKFASITTSFKEAIVEEQENRKDDNIHLTRFLRVLANFL
VLCCLAGSGYLIFFVVRRSQKFALAGLENYGWWERNEVNMVMSLLGMFCPMLFDVISSLE
NYHPRIALQWQLGRIFALFLGNLYTFIIALMDEINLKRKEEEVIIANMTLWQASLYNGTL
GENNTTPVITVDPADVPRGPCWETMVGQEFVRLIISDTMTTYVTLLIGDFLRAFIVRFLN
YCWCWDLEYGFPSYSEFDVSGNVLGLIFNQGMIWMGAFYAPCLPAMNVLRLHVSMYLQCW
AVMCCNVPQERVFKASGSNNFYMAMLLVILFLSTLPAIYTIVSIPPSFDCGPFSGKSRMF
DVIQETLENDFPAWFGMVFSYVSNPGLVLPFLLLMILAIYYLHSISKTYKQSNLDLKKKL
QTQNEENKKKNKRAALKAATELEEARNTLQEQQSQSNNNASNRGDRRLNDSNGTTNQIEN
GHTAKNHCRPPYPHRCMDRPSVPRGPGMPGYLPGLPHRPAP
NT seq
2826 nt
NT seq
+upstream
nt +downstream
nt
atgttattacgagtaatgcatttttttgggggtatagagaatgaagactacaatacagac
tacaatgaggacacagaccgagaggcaaagagaaagagagggagaaggaagaagggagaa
agagaaaacaaaagaaaagcaaagaaaggagggagtacaggcatatcagggatttacact
caggagcaatctgagaaagagcgccagagaaggaaggccaggcgacataaagataaagag
gaagaaaagacgggaatagaggaagacggcgaagaggtggacaacgatatccaaagtcaa
agaaagaatgggaggaatggaaaagcaaaaaagcttaaagaagagaaagaggaggagaac
aggaatcacaagagacaaagaccgtctaaaacagacgaggaaataactgccagtaagaag
aaagccaagaagaaacaggaagacgaaccacaaaagacagacaaaggaaagaaaaaaaga
aagaaagtagaaaccagttctgaatcctctgaggtggaggaactagctggggaggaggag
gaggaggaggaggaaaaggaaatggtggtgggggtgctgactcctgaggagctggagaag
ctgaaggaggcggtggatgagaggaagaagctcatcaccacgctcagaggaaagccctgg
cccatgatgaagaaactacaaacactcaaggaatctcaggagtttgtggagaaatatgag
ggtgctcttgggagaggaaggggtagaaagctgtatgcctacaaagtcatgatgcaaaag
aaatggatgaagttcctgcgcgacttcgagaacttcaagacagcgtgcatcccatgggaa
atgaagatcaaagacatagaaagtcattttgggtcctctgttgcgagctacttcatcttc
ctcaggtggatgtatgggatcaacacgattctctttggactcacgttcggcctggtcatg
gttccagaggcactgatggggaggccttatgggagcattccgaggaagactgttcccaga
gcggatgaaacaagtgccatggactttgccatcttgtgggattttggggggtttgctaag
tactcagtgcttttctatggctactacaacaaccagcggactgttggctggctgaagttc
cgcatgcctctctcttacttcctggttggggtcggcacagtggcctacagctacatggtg
gtcattcggaagatggcccgcaacgccaatgagcaaggaggcggagatgacaccagtttc
aacttcagctggaagatgttcaccagctgggactacctcattgggaaccctgaaaccgca
gacaacaagtttgcctccataacaaccagcttcaaggaagccattgtggaggagcaagag
aacaggaaagatgacaacatccaccttacccgcttcctcagggtcttggccaacttcctg
gtactctgctgcttggcaggaagtggatatctgatcttctttgtggtcaggaggtctcag
aagtttgcccttgcggggctggagaactacggctggtgggaaagaaatgaagtgaacatg
gtgatgtctctgctggggatgttctgtcccatgctgttcgacgtgatcagctctctggag
aattaccacccccgcatcgccctccagtggcagctggggcgcatcttcgccctgttcctg
ggcaacctctacaccttcatcatcgccctcatggatgagatcaacctcaaaaggaaagag
gaggaggtcataatagccaacatgacgttgtggcaggccagcctgtacaacgggaccctg
ggagagaacaacaccactcctgttatcactgttgacccagctgatgtccccagaggacct
tgttgggagactatggtgggacaggagtttgtacggctcatcatttctgacaccatgacg
acgtacgtgaccctgctgatcggggatttcctcagggcgtttatcgtgcgcttcctcaac
tactgctggtgctgggacctggagtatggctttccctcctattcagagtttgatgtcagc
ggaaatgtcctggggttaatctttaatcagggaatgatctggatgggagcattttacgcc
ccctgtctgccagcgatgaacgtgctgcgcctgcacgtctccatgtacctgcagtgctgg
gcagtcatgtgctgcaacgtcccccaggagcgcgtcttcaaggcctcgggctccaacaac
ttctacatggccatgctgctggtcatcctcttcctctccaccctgcccgccatctacacc
atcgtctccatacccccctctttcgactgtggacccttcagtgggaaaagtcgaatgttt
gacgtaatccaggagaccctggagaatgattttccagcatggtttgggatggtattcagc
tatgtgtccaatcctggcctagtccttccattccttctgcttatgatattagcaatatac
tatcttcactccatatcaaagacatacaaacaatccaacctggatcttaaaaagaaactt
caaacacaaaatgaagaaaataaaaagaagaataagagggctgctctaaaggcagcgaca
gagctggaggaggccagaaatactctacaagaacagcagtcacaaagcaacaacaacgct
tcaaaccgaggtgacagaagacttaacgacagtaatggtacaactaaccagatagagaac
ggacacaccgcaaagaaccattgtagacctccttatccccatagatgcatggacagacct
tcagtcccaagaggacctggtatgcctgggtacctaccaggcctcccacatcgaccagca
ccctaa
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