Alosa sapidissima (American shad): 121714841
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Entry
121714841 CDS
T11137
Symbol
pole
Name
(RefSeq) DNA polymerase epsilon catalytic subunit A
KO
K02324
DNA polymerase epsilon subunit 1 [EC:
2.7.7.7
]
Organism
asad Alosa sapidissima (American shad)
Pathway
asad03030
DNA replication
asad03410
Base excision repair
asad03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
asad00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
121714841 (pole)
03410 Base excision repair
121714841 (pole)
03420 Nucleotide excision repair
121714841 (pole)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
asad03032
]
121714841 (pole)
03400 DNA repair and recombination proteins [BR:
asad03400
]
121714841 (pole)
Enzymes [BR:
asad01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
121714841 (pole)
DNA replication proteins [BR:
asad03032
]
Eukaryotic type
DNA Replication Elongation Factors
DNA polymerase epsilon complex
121714841 (pole)
DNA repair and recombination proteins [BR:
asad03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
DNA polymerase epsilon complex
121714841 (pole)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF1744
POL2_thumb
DNA_pol_B_exo1
zf_DPOE_2
zf-DPOE
DNA_pol_B
DNA_pol_B_exo2
RNase_H_2
GARP
Motif
Other DBs
NCBI-GeneID:
121714841
NCBI-ProteinID:
XP_041955881
LinkDB
All DBs
Position
8:8450841..8481637
Genome browser
AA seq
2286 aa
AA seq
DB search
MVLQNSGRFKADRGGGGDQENQQDDMSGQSAAKRLERSQFTDEMDARFGFERMKDPGEKT
GWLMNMHPTEILDDDKRLISAVDYYFIQDDGRRFKVALPFKPYFYVATRKNCEREVISFL
SKKFQGKVAKLEVCPKEDLDLANHLVGLKRNYVKLSFNTVDDLIKVKREIAPAVRKNRER
EKSNETYTSMLSSALVGGNVTAGDEDGPSKKMADQLDNIVDMREYDVPYHVRLSIDLQIH
VAHWYNVRYRGSAYPPEIVRRDDLVERPDPVVLAFDIETTKLPLKFPDAESDQIMMISYM
IDGQGFLITNREIVSEDIEDFEFTPKPEYEGPFTVFNEPDEASLIQRWFEHVHETQPNIF
VTYNGDFFDWPFVETRAAQHGLSMHKEIGFQKDSQGEYKSSQAIHMDCLRWVKRDSYLPV
GSHNLKAAAKAKLSYDPVELDPEEMCRMATEEPQTLATYSVSDAVATYYLYMKYVHPFIF
ALCTIIPMEPDEVLRKGSGTLCEALLMVQAFHANIVFPNKQEQVFNKMTSDGHVMDSETY
VGGHVEALESGVFRSDIPCRFKMNPAAFDFLLQRVERTMRHAIEEEENIPLEQVTNFNEV
CDEIKKKLISLKEVPNRIECPLIYHLDVGAMYPNIILTNRLQPSAMVDEAICAACDFNKP
GANCQRRMTWHWRGEIMPASRSEFHRIQQQLESEKFPPFFPNGRPRAFHQLDREEQARHE
KKRLADYCRKAYKKVHVTKLEARVTTICQRENSFYVDTVRAFRDRRYEFKGLHKVWKKKL
SQAQDAGDAAEVKRCKNMEILYESLQLAHKCILNSFYGYVMRKGARWYSMEMAGIVCYTG
ANIITQARELIEQIGRPLELDTDGIWCVLPNSFPENFVIKSTHEKKPKVTISYPGAMLNI
MVKEGFTNHQYQELVDPANLTYETRAENSIFFEVDGPYLAMILPASKEEGKKLKKRYAVF
NEDGSLAELKGFEVKRRGELQLIKIFQSSVFEAFLKGTTLEEVYASVAKVADYWLDVLYS
KAANMPDTELFELIAENRSMSRKLEDYGEQKSTSISTAKRLAEFLGDQMVKDAGLSCRYV
ISRKPEGSPVTERAIPLAIFQAEPSVKKHFLRKWLKMPSLHELDIRTILDWNYYIERLGS
AIQKIITIPAALQQVKNPVPRVRHPDWLHKKLLEKNDIFKQKKISELFTSEGKRQVAQTL
EAGEAADIEDFGKPPRPLQPAILISTKRKRVSQGEESQAESQELELTQSWREILGPPPPK
GPSKEELLVWLRYHKKKWELQLRQRKERRKKRRLVDGEAQPAGGGVIRDGPTTALGNFLR
KTARSMLDMPWQIIQIAETSHPGLFKLWAVIGSDLHCMKLTIPRVFYVNQKIPKQDEGPT
YRKVNRILPRSNVVYYLYQYTVPEDMYQEHINEINADLSAPDIEGVYETQVPLLFRALVQ
LGCMCMVNKQAVRDLAGREADTFDLEHLEMRSLAQFSYLEPGSVRHIYLYHHSQGHKALF
GLFIPSQRKASVFVLDTVRSNQMPNLSTLYGAERTALLEKTSEDLLPPEKHQFEVRAEND
AKAIYRAVQRILLNYKEERRGPTLIAVQSNWELRRLAAGMAVLEEFPVVPVHVVDEINYS
VLDWQRHGARRMVRHYLNLDSCLSQAFDMARYYHLPVGNLPQDVSIFGSDLFLARHLRKH
NHLLWLSPTARPDLGGKEADDSRLVMESDDRASVEINSQGCYSTVCVELDIQSLAVNTIL
QSQHVNDMEGGASMGVSFDVIQHASLEEMMTGNQAATAVASYDETALCSNTFRILKSMVV
GWVREITQYHNVYADNQVMHFYRWLRSPSSLLYDPALHRTLNNMMKKIFLQLVAEFKRLG
SSVVYGNFNRIILCTKKRRIDDAIAYVEYITNSIHSREIFHSLSLTFSRCWEFLLWMDPA
NHGGVKGKLPSSILCGENDGGKKKKEKGEGSEEEGSEDEDEDEEEVGDGEEDVEDLIESN
WNIMQYLPQTASCQKYYLMIISAYIAAVYHSMREELRRNAPGATPIKRRGGSQASQQAAG
DSNSLPGMISFSQEYVSGELTQNFFTITQKIQKKVMGTRNMTLPSEMFPALPGSHLPLNN
PALEFIKYVCQVLSLDGNIVNQVNKLKRDLLRLVDVGEFSDDAQFRDPCHSYVLPEVICH
HCNFCRDLDLCKDPSMAQDGTVLPQWFCSNCQAQYETDSIEMELVEALQKKLMSFTLQDL
ECAKCKGVKEANMPLYCRCAGDFNLTFTTKSLSEQIRVFRNIAGYYKMGFLQETIDWLLL
MSPQLA
NT seq
6861 nt
NT seq
+upstream
nt +downstream
nt
atggttctacaaaacagtggaagattcaaagctgacagaggaggaggaggggaccaggaa
aaccaacaggatgacatgtccgggcagtcagcggccaagcggctggagcgcagtcagttc
actgatgagatggatgcacgcttcggcttcgaaaggatgaaagatcccggggagaaaacg
ggctggttgatgaatatgcacccgacagaaatactggatgatgacaaaaggctgataagt
gctgtggactattacttcatccaggacgatggaagaaggtttaaggtggcacttccattt
aagccatacttctatgttgctaccagaaagaattgtgagcgagaggtcatttcattcctg
tcaaagaagtttcaggggaaagtggctaagctggaagtctgccccaaagaagacctggac
ctggcaaaccatctggttggacttaaaagaaattatgtcaagctgtccttcaacacagta
gacgatctgatcaaggtcaaacgagagattgccccagctgttcgtaagaaccgagaaaga
gagaagtccaatgagacctatacaagcatgctgtccagtgcattggttggaggaaatgtc
acagcaggggatgaggacggaccgtccaagaagatggcagatcagttggataacatagtg
gacatgagagaatatgacgtgccctaccatgtccgcttgtccattgacctgcaaatccat
gtggctcactggtacaacgtccgatatcgtggcagtgcctatcctcctgagattgtacga
agggatgaccttgtggagcgaccggatccagttgtgctggcttttgatatagagacgacc
aagctgcccctcaagttccctgatgcagagtcggaccaaatcatgatgatctcatatatg
attgatggacagggctttctcattacaaacagagaaattgtctctgaggacattgaggat
tttgagtttacccccaaaccagagtacgagggaccgtttacagtgttcaatgagccagat
gaggcttcgcttatccagaggtggtttgaacacgtccacgagacgcagcccaacatcttt
gtcacatacaatggggacttctttgactggccctttgtggagacacgggcggcgcagcat
ggcctgagcatgcacaaggagattggctttcagaaggacagccagggggagtacaagtcc
agtcaggccattcacatggactgtctcaggtgggtgaagagagacagctacctgccagtg
gggagtcacaacctgaaggcagcggcaaaggccaagctgagctacgacccggtggagctg
gacccagaggagatgtgtcgcatggccacggaggagccacagaccctggccacttactcg
gtgtccgacgccgtggccacatattacctctacatgaagtacgtccatcccttcatcttc
gctttgtgcaccatcattccaatggagccggacgaggttttacgtaaaggctctggcacg
ttgtgtgaggctctactgatggtccaggccttccatgccaacatagtcttccccaacaag
caggagcaggtgtttaacaagatgaccagtgatggtcacgtgatggactctgagacctat
gtgggcggccacgtggaggccctggagtccggggtcttccgcagtgacatcccctgccgc
ttcaaaatgaaccctgcagcatttgacttcctccttcagagggttgagagaactatgcgt
catgccattgaggaagaggagaatattccgctggaacaagtcactaacttcaatgaggtg
tgtgatgagatcaaaaagaagctgatctcgctgaaggaggtgcccaacaggattgaatgt
cctctcatctaccatcttgacgtgggggctatgtaccccaacatcatcctgacaaatcgc
ctgcagccctctgccatggtggatgaggccatctgcgctgcctgtgactttaacaaacca
ggggctaactgccagaggaggatgacctggcactggagaggggagatcatgccagcgagt
cgcagtgagtttcatcgcatccagcagcagctggagtccgagaagtttcctcctttcttc
cccaacggtcgcccgcgggccttccaccagctcgaccgagaggaacaggctcgtcacgag
aagaaacgtcttgccgattactgtaggaaggcttataagaaggtgcatgtcacaaagctg
gaggcaagagtcaccacaatctgccagagggagaactctttctatgtggacactgtccga
gccttcagagatcgccgttatgagttcaagggcttacacaaggtgtggaagaagaagctg
tctcaggctcaggacgcaggcgatgccgccgaggtgaagcgctgtaagaacatggagatc
ctgtacgagtctctgcagctggcccacaagtgcatcctcaactccttctatggctatgtc
atgaggaaaggagctcgctggtactccatggaaatggcaggaattgtgtgctatactggg
gccaacatcatcacccaagccagggagctcattgaacaaattgggaggcctttggagttg
gacacggatggaatttggtgtgttctacccaactcttttcctgagaactttgtcatcaaa
tcaacccatgagaagaagcccaaagtcaccatctcctacccgggagccatgcttaacatc
atggttaaggagggctttaccaatcaccagtaccaggagctggtggatccggccaacctg
acctacgagacgcgcgctgagaacagcatcttctttgaggtggacgggccttacctggcc
atgatactgcccgcctccaaagaagagggcaagaaactgaagaagaggtacgctgtgttt
aatgaggacggctctctggctgagctgaagggctttgaggtgaagcgtaggggagagctg
cagctcatcaagatcttccagtcctctgtgttcgaggccttcctcaagggcaccacgctg
gaggaggtctacgcctcagtggccaaagtggccgactactggctggacgttctctacagc
aaggctgccaacatgccggacactgagctgttcgagctgatcgctgagaaccgctccatg
tctcgtaagctggaggactacggcgagcagaagtccacctccatcagcacggccaagcgc
ctggcggagtttctgggggaccaaatggtgaaggacgcggggctgagttgccgctacgtt
atctcacgcaaacccgaaggctcgcccgtcactgagagggccatacctttggctatcttc
caggcagaaccttcagtcaaaaagcatttcctgcgcaaatggctgaagatgcccagtctt
cacgaactggacatcagaacaatccttgactggaactactacattgagcgtctgggcagt
gccatccagaagatcatcaccatcccggcggcactgcagcaggtgaagaatccggtgccc
agggtgcgccaccccgactggctgcacaagaagctgctggagaagaacgacatcttcaag
cagaagaagatcagcgagctcttcaccagcgagggaaagagacaggtggcccagacgctg
gaggccggggaggccgctgacattgaggactttgggaagcccccgcgaccgctgcagccg
gccatcctcatcagcaccaagcgcaagcgcgtgtcccagggggaggagagccaggccgaa
tcccaggagctggagctcacgcagtcctggagggagatcctcggcccgccgccccccaag
ggaccatcaaaggaggagctgctggtgtggctgcgctaccataagaagaagtgggagctg
cagctgcgccagaggaaggagcggcgtaagaagcggcgcctggtggacggcgaggcccag
cctgcagggggcggcgtgatccgcgacggccccaccaccgcgctgggcaacttcctgcgc
aagacggcccgcagcatgctggacatgccctggcagatcatacagattgcagagaccagt
cacccaggcctgtttaagctgtgggcagtgataggcagtgacctccactgcatgaagctc
accatccccagagtcttctatgtcaaccagaagatcccaaagcaagacgagggacccaca
tacagaaaggtgaaccgaattctcccccgctccaatgtggtgtactacctctaccagtac
acagtccctgaggacatgtaccaagagcacatcaacgagatcaacgccgacctctccgct
cctgacatcgagggagtgtatgagactcaggttcctctgctgttccgagcgctggtgcag
ctgggctgtatgtgcatggtcaacaagcaggccgtgcgtgaccttgccggccgagaggct
gacacttttgaccttgagcacctggagatgagatcactggctcagttcagctacctggaa
cctggcagtgtgcgtcacatctacctgtatcaccacagccaaggacacaaggcgctgttt
ggcctctttattccgtctcagcgcaaggccagcgtgtttgtgctcgacacggtgcgcagt
aaccagatgcccaacctgagcaccctgtacggggcagagcgcacagctttgctggagaag
accagcgaggacctgctgccccccgagaagcaccagtttgaggtgcgggccgagaacgac
gccaaggccatttacagagctgtgcagcgcatcctcctcaactacaaggaggagcgccgt
ggccccactctgatcgcggtgcagtccaactgggagctgcggcgtctggcggcaggcatg
gcggtgctggaggagtttccggtggtgccggtgcacgtggtggacgagatcaactacagc
gtgctggactggcagcgccacggtgcccgccgcatggtccgacactacctcaacctggac
agctgcctctcgcaggccttcgacatggccaggtactaccacctgcctgtaggtaacctg
cctcaggacgtgtccatcttcggctcggacctgttcctggcgcgccacctgcgcaagcac
aaccacctgctgtggctctcacccactgccaggcccgacctggggggcaaggaggcggac
gacagcaggctggtgatggagagcgatgaccgcgcttcggtggagatcaacagccagggc
tgctactccacagtgtgtgtggagctagacatccagagtctggcggtcaacaccattctg
cagtcccaacacgtcaacgacatggagggcggcgccagcatgggcgtcagctttgacgtc
atccagcacgcctccctggaggagatgatgacgggcaaccaggccgccaccgctgtggcc
agctacgacgagacggcgctctgctccaacacattcaggatcctgaagagcatggttgtt
ggctgggtgcgcgagatcacacagtaccacaacgtctacgccgataaccaggtgatgcac
ttctaccgctggctgcgatcacccagctctctgctctacgacccagccctgcaccgcacc
ctgaacaatatgatgaagaagatcttcttgcaattggttgctgagtttaaacggcttggc
tcctctgtcgtctacgggaacttcaatcgaatcatcctctgcaccaaaaaacgacgcatt
gacgacgcaatcgcttatgtcgagtacatcactaacagcatccactcccgggagatcttc
cactccctctcgctcaccttctcacgctgctgggagttcctgctgtggatggacccagcc
aatcacggaggggtgaagggcaagctgccctccagcatcctctgtggagagaatgatggt
ggtaagaagaaaaaggaaaagggcgaggggtcagaggaggaaggcagtgaggatgaggat
gaggacgaagaagaggtgggtgatggtgaagaggatgttgaagacctgattgagagcaac
tggaacatcatgcagtatctcccccaaacggcgtcctgtcagaagtactacctgatgatc
atctcggcctatattgcagctgtctatcacagcatgagggaggagctacggcgcaatgct
ccaggagccacgcccatcaagaggcggggcggaagccaggcctctcagcaggcagcaggg
gacagcaactccctacctggcatgatcagcttctctcaagagtacgtctcaggcgagctg
acccagaacttcttcaccatcacccagaagatccagaagaaggtgatgggcacgcgcaac
atgaccctgccctccgagatgttccccgccctgcccggctcccacctgcccctcaacaac
cctgctctggagttcatcaaatacgtctgccaggtgctgtcgttggatggcaacatcgtg
aaccaggtgaacaagctgaagcgagacctgctgaggctggtggacgtgggcgagttctca
gacgacgcccagttccgtgacccatgccactcgtacgtcctgccagaggtcatctgccac
cactgcaacttctgccgtgaccttgacctgtgcaaggacccttccatggcacaggatggc
actgttctgccacagtggttctgctccaactgccaggcccagtacgagacggactccata
gagatggagctggtggaggccctacagaagaaactgatgagcttcaccctgcaggacctg
gagtgtgctaaatgcaaaggagtgaaggaggccaacatgcctctgtactgtcgctgtgct
ggcgatttcaacctgactttcacaaccaagagcttgtccgagcagataagagtgttccgg
aacattgcgggttattacaagatgggcttcctgcaggagaccatcgactggctgcttctc
atgagcccccagttggcctaa
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integrated database retrieval system
