Alosa sapidissima (American shad): 121714906
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Entry
121714906 CDS
T11137
Symbol
smarca2
Name
(RefSeq) probable global transcription activator SNF2L2 isoform X1
KO
K11647
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2/4 [EC:5.6.2.-]
Organism
asad Alosa sapidissima (American shad)
Pathway
asad03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
asad00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
121714906 (smarca2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
asad03021
]
121714906 (smarca2)
03036 Chromosome and associated proteins [BR:
asad03036
]
121714906 (smarca2)
Transcription machinery [BR:
asad03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
121714906 (smarca2)
Chromosome and associated proteins [BR:
asad03036
]
Eukaryotic type
Histone modification proteins
HDAC complexes
REST complex
121714906 (smarca2)
Chromatin remodeling factors
BAF complex
121714906 (smarca2)
PBAF complex
121714906 (smarca2)
GBAF(ncBAF) complex
121714906 (smarca2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
SnAC
Bromodomain
HSA
BRK
QLQ
HDA2-3
ResIII
DEAD
Motif
Other DBs
NCBI-GeneID:
121714906
NCBI-ProteinID:
XP_041956034
LinkDB
All DBs
Position
8:11223267..11274503
Genome browser
AA seq
1623 aa
AA seq
DB search
MSTPTDPSGGMSHPGPSPGPGLSPGPILGSSPGPGPSPGSVHSMMGPSPGPPSGPHSMQG
QGPGDYPQEGMHQMHKPMEGMLEKVPMADEMHFGQMKNVGMRTLHSGMGPPQSPMEQHSQ
GYISPHPSPMGVPEHASSPMSSAGPTAPQMPPAQPGPMMPMDPQAMGQPGRGPSSFSPVQ
LQQLRAQILAYKILGRGQPLPENLQLAVQGKRSLPTMQQPSVNTGPYSRPPGMPMPPISG
PSPGPCPAPAMQGHAQSPAPKPWTEGQGAGEPSAIPQKHPMPTPSGRPSPAPPAAQQQTP
QPMVGPLGGQQQHQHQHQHQHPQPQQPQLPHQPSTQHHQQQALQQQQQAGQPSLIIQLQQ
KQNRITPIQKPQGLDPVEILQEREYRLQARIAHRIQELENLPGSLPPDLRTKATVELKAL
RLLNFQRQLRQDVVACMRRDTTLETALNSKAYKRSKRQTLREARMTEKLEKQQKIELERK
RRQKHQEYLNSILQHAKDFKEYHRSISGKIQKLSKAVATWHTNTEREQKKETERIEKERM
RRLMAEDEEGYRKLIDQKKDKRLAYLLQQTDEYVANLTSLVYEHKAAQAAKEKKKKKKKK
KLQKLEGDADGLGAIGPDGEPMDESSQMSELPVKVIQTETGKVLQGTDAPKSSQLEAWLE
MNPGYEVAPRSDSEESGSEFEEEDEDEATSHPDTEEKKSTDSDTEKAAQHIIESAKQDVD
DEYSAEAGSESTHSYYGVAHAVIERVEKQSTLLVNGSLKHYQVQGLEWMVSLYNNNLNGI
LADEMGLGKTIQTIALITYLMEHKRLNGPYLIIVPLSTLSNWVYELDKWAPSIVKIAYKG
TPGMRRSLVPQLRSGKFNVLITTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQV
LNTHYVAPRRLLLTGTPLQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGERVDL
NEEETILIIRRLHKVLRPFLLRRLKKEVESQLPEKVEYVIKCDMSAIQKVLYRHMQGKGI
LLTDGSEKDKKGKGGAKTLMNTIMQLKKICNHPYMFQHIEESFAEHLGFANGIISGPELY
RASGKFELLDRILPKLQATNHRVLLFCQMTTLMTIMEDYFGYRNFKYLRLDGTTKSEDRA
ALLKKFNEPGSQYFIFLLSTRAGGLGLNLQAADTVVIFDSDWNPHQDLQAQDRAHRIGQQ
NEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQAGMFDQKSSSHERRAFLQAILEHEEQ
NESSSTVASPSQLQNSGAFTETLEEDEVPDDETLNQMIARIEDEFELFMRMDLDRRREDA
RNPKRKPRLMEEDELPNWILKDDAEVERLTCEEEEEKMFGRGSRSRRDVDYSDALTEKQW
LRAIEDGNLEEMEEEIRLKKRKRRRHSDKEGRRESGEKAKKKRGRPPAEKLSPNPPKLTK
QMSAIVDTVINYRDSSGRQLSEVFVQLPSRKELPEYYELIRKPVDFKKIKERVRSHKYRS
VSDLEKDVMLLCHNAQTFNLEGSQIYEDSIVLQSVFKSARQKIAKEEESEDDSDDDEEEE
EESETESKSVRVKIKLSKREERSHDKGKKRQSRNKAKPVVSDEDSDDDPDDKEQSEGSKS
EDE
NT seq
4872 nt
NT seq
+upstream
nt +downstream
nt
atgtccacacccacggacccatctggtggaatgtcccaccctggaccatccccaggccca
ggactgtccccgggtcccatcctgggatccagccctggtccaggcccctctcctgggtca
gtgcacagcatgatgggccccagcccggggcctcccagtgggccccacagcatgcagggc
caggggcccggagattaccctcaggaaggcatgcatcagatgcataagcccatggagggc
atgctcgagaaagtgcctatggctgacgaaatgcactttggccagatgaagaacgtgggg
atgaggactctgcacagtggcatgggccccccccagagccccatggagcagcacagccaa
gggtacatatcccctcacccctctcctatgggtgtccccgagcatgcctccagccccatg
tccagcgcgggccccaccgctccccagatgccccctgcccagccgggccccatgatgccc
atggacccgcaggcgatggggcagccgggccgcgggccgtcctccttcagccctgtgcag
ctgcagcagctccgtgctcagatcctggcctacaagatcctgggccgtgggcagccactg
cccgaaaacctgcagctggcggtgcagggcaagaggagtctgcccaccatgcagcagccg
tctgtcaacactgggccttacagccggccaccaggtatgccgatgcctcctattagtgga
ccttccccagggccgtgcccggcgcctgccatgcaaggacacgctcaaagtcctgcacca
aaaccctggacagagggccagggtgctggcgaaccctccgccatcccgcagaagcacccg
atgcccacccccagtggccgtccgtccccagcgccgcctgccgcccagcagcagacgccc
cagcccatggtcggcccgttgggagggcaacagcagcatcagcaccaacaccagcatcag
cacccccagccgcagcagccacagctgccccaccagccctccacccagcatcatcagcag
caagccctccagcagcagcagcaagctggtcagccctcgctcatcatccagctgcagcag
aagcagaaccgcatcacgcccatccagaagccccaggggctggaccctgtggagatcctg
caggagcgcgagtacagactgcaggccaggattgctcaccgcatccaggagctggagaac
ctgccgggctctcttcctccagacctgcgcaccaaagcaactgtggagctaaaggccctc
aggctgctcaatttccagcgccagctgaggcaggacgtggtggcctgcatgcggcgggac
accacgctggagacggcgctcaactccaaggcctacaagcgcagcaagaggcagacgctg
agggaggcgcgcatgacagagaagctggagaagcagcagaagatcgagctggagaggaag
cgccggcagaagcaccaggagtatttgaacagtattctgcaacatgccaaggacttcaaa
gagtaccacaggtccatttctggaaagatccagaagctctccaaggccgtggccacatgg
cacaccaacacggagcgcgagcagaagaaggagacggagcggatcgagaaggagagaatg
aggaggctgatggcggaggatgaggaaggctaccggaagctgattgaccagaagaaggac
aaacgcctggcctacctgctgcagcagacggacgagtacgtggccaacctcaccagcttg
gtgtacgagcacaaggccgcccaggccgccaaggagaagaagaaaaagaagaagaagaag
aagttgcagaaattggagggcgacgctgatgggcttggagccatcggtccagatggagag
ccaatggacgagagcagtcagatgagcgagctgcccgtcaaggtgatccagacggagacg
ggcaaagtcctgcagggcaccgacgcccccaagtccagtcagctggaggcctggctagag
atgaacccgggctatgaagtggctccgcgctccgacagtgaggagagcggctcggagttt
gaggaagaggacgaggacgaggccacgtcacacccggacacggaggagaagaaatccact
gactccgataccgagaaggcggcccagcacatcattgagtcggcgaaacaggatgtggat
gacgagtacagtgcggaggcgggctccgagagcacccactcctactacggcgtggcccac
gccgtcattgagagggtggagaagcagtccaccctacttgtcaatggcagcctgaaacat
tatcaggttcagggcctggagtggatggtgtccttgtacaacaacaacctgaacggcatc
ctggctgacgagatgggcctggggaagaccatccagaccatcgccctcatcacctacctg
atggagcacaagaggctcaacgggccctacctgatcatcgtgcctctctcaactctctcc
aactgggtgtatgagctcgacaagtgggcgccctccattgtcaagattgcatacaagggc
acgccgggcatgcgccgatcgctggtgcctcagctgcgcagcggcaagttcaacgtgctc
atcaccacctatgagtacatcatcaaggacaagcacatcctggccaagatccgctggaaa
tacatgatcgtggacgagggccaccgcatgaagaaccaccactgcaagctgacgcaggtg
ctcaacacgcactacgtggcaccgcggcgcctcctgctcacaggcacgccgctgcagaac
aagctgcccgagctgtgggcgctactcaacttcctgctgcccaccatcttcaagagctgc
agcaccttcgagcagtggttcaacgcgcccttcgccatgaccggagagcgggtggatctg
aatgaagaggagaccattctgatcattcgccgtctgcacaaggtgctccgccccttcctg
ctgcgccgcctgaagaaggaagtagaatctcaacttcctgagaaggtggagtatgtcatc
aaatgtgacatgtcggccatccagaaggttctgtatcggcacatgcaaggcaagggcatc
ctgctgaccgatggctctgagaaggacaagaagggcaaaggaggtgcgaaaaccttgatg
aacaccattatgcagctgaagaagatctgcaatcatccttacatgttccagcacatagag
gaatccttcgcagagcacttgggctttgcgaatggcatcataagcggtccagagttgtac
cgtgcgtctggtaagtttgagctgctagaccgcatcctgcccaagctgcaggccaccaac
caccgcgtgctgctcttctgccagatgaccaccctcatgaccatcatggaggactacttt
ggctaccgcaacttcaagtacttgcgcctggacgggaccaccaagtcagaggaccgcgcg
gcactgctgaagaagttcaacgagccgggctcgcagtacttcatcttcctgctgagcaca
cgcgccggggggctcggcctcaacctgcaggccgccgacaccgtagtcatcttcgacagc
gactggaacccccaccaggatctgcaggcgcaggaccgcgctcaccgcatcgggcagcag
aacgaggtgcgcgtgctgcgcctctgcaccgtcaacagcgtggaggagaagatcctggcc
gccgccaagtacaagctcaacgtggaccagaaggtcatccaggccggcatgttcgaccag
aagtcgtccagccacgagcgccgcgccttccttcaggccatcctggagcacgaggagcag
aacgagagctccagtaccgtggcgtctccgagtcagctccagaactccggagccttcaca
gagacgctggaggaagatgaggtcccagatgacgagaccctgaaccagatgatcgccagg
atcgaggacgagtttgaacttttcatgcgcatggaccttgaccggaggcgtgaggacgcc
cgcaaccccaagcgcaagccgcggctgatggaggaggacgagctgcccaactggatcctg
aaggacgatgcggaggtggagcggctcacctgcgaggaggaggaagagaagatgttcggc
cgcggctcccgctcgcgccgcgacgtggactacagcgacgcgctgaccgagaagcagtgg
ctgagggccatcgaggacgggaatctggaggagatggaggaggagatccggctgaagaaa
cgcaagcggcggcgacacagcgacaaggaggggagacgcgagagcggcgagaaggccaag
aagaaacggggccgaccgccggccgagaagctctcgcccaacccccccaaactcaccaag
cagatgtccgccatcgtggacacggtcatcaactacagggacagctctggcagacagctc
agtgaggtctttgtgcagctgccctcacgcaaggagctccccgaatactatgagctgata
agaaaacccgtggacttcaagaagatcaaggagcgcgtgcgcagtcacaagtataggagc
gtgagtgacctggagaaggacgtcatgctgctctgtcacaacgcccagaccttcaacttg
gagggctcacagatctatgaggactccatcgtgctccagtctgtgttcaagagcgccagg
cagaagattgcgaaggaggaggagagcgaagacgacagtgatgacgatgaggaggaggag
gaggagtccgaaactgagtccaagtccgtgagggtgaagatcaagctgagcaaaagagaa
gaacgcagtcacgacaaagggaagaagaggcagagccgcaacaaggccaagcctgtggtc
agcgatgaggacagcgacgatgacccagacgataaggagcagtcggagggtagcaagagt
gaggacgagtga
DBGET
integrated database retrieval system
