Alosa sapidissima (American shad): 121715108
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Entry
121715108 CDS
T11137
Name
(RefSeq) transitional endoplasmic reticulum ATPase isoform X1
KO
K13525
transitional endoplasmic reticulum ATPase
Organism
asad Alosa sapidissima (American shad)
Pathway
asad04137
Mitophagy - animal
asad04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
asad00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
121715108
09140 Cellular Processes
09141 Transport and catabolism
04137 Mitophagy - animal
121715108
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
asad03019
]
121715108
03009 Ribosome biogenesis [BR:
asad03009
]
121715108
04131 Membrane trafficking [BR:
asad04131
]
121715108
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
asad04147
]
121715108
Messenger RNA biogenesis [BR:
asad03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Ran-mediated transport factors
121715108
Ribosome biogenesis [BR:
asad03009
]
Eukaryotic type
Pre-60S particles
Ribosome quality control proteins
121715108
Membrane trafficking [BR:
asad04131
]
SNARE
SNARE associated proteins
Others
121715108
Autophagy
Aggrephagy
Other aggrephagy associated proteins
121715108
Exosome [BR:
asad04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
121715108
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA
AAA_lid_3
CDC48_N
RuvB_N
AAA_16
CDC48_2
AAA_5
AAA_33
AAA_2
AAA_22
TIP49
AAA_14
NPHP3_N
RNA_helicase
Vps4_C
AAA_28
nSTAND3
Parvo_NS1
Mg_chelatase
AAA_17
ATPase_2
IstB_IS21
AAA_18
AAA_7
ATPase
DUF815
ABC_tran
AAA_lid_PRS2_C
AAA_24
NB-ARC
TsaE
ResIII
NACHT
Sigma54_activat
Viral_helicase1
SLFN-g3_helicase
KAP_NTPase
Zot
Motif
Other DBs
NCBI-GeneID:
121715108
NCBI-ProteinID:
XP_041956412
LinkDB
All DBs
Position
8:complement(19818494..19828876)
Genome browser
AA seq
806 aa
AA seq
DB search
MASGGESKNDDLSTAILKQKNRPNRLIVDESINEDNSVVSLSQAKMDELQLFRGDTVLLK
GKKRRETVCIVLSDDSCSDEKVRMNRVVRNNLRVRLGDVISIQPCPDVKYGKRIHVLPID
DTVEGITGNLFEVYLKPYFLEAYRPIRKGDIFLVRGGMRAVEFKVVETDPSPYCIVAPDT
VIHCEGEPIKREDEEESLNEVGYDDIGGVRKQLAQIKEMVELPLRHPALFKAIGVKPPRG
ILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAI
IFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRF
GRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAAL
QAIRKKMDLIDLEDETIDAEVMNSLAVTMDDFRWALSQSNPSALRETVVEVPNITWEDIG
GLDDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFI
SIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNVGDGGGAADRV
INQILTEMDGMSSKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRMNILKAN
LRKSPIAKEVDLEFLAKMTNGFSGADLTEICQRACKLAIRESIENEIRRERERQTNPSAM
EVEEDDPVPEIRKDHFEEAMRFARRSVSDNDIRKYEMFAQTLQQSRGFGSFRFPSSNQSG
SGPSQGSSGGGGGTVFNEDNDDDLYG
NT seq
2421 nt
NT seq
+upstream
nt +downstream
nt
atggcttcgggaggagaatccaaaaatgatgacctatccactgcgatcctgaagcaaaag
aacagaccaaacaggttgatagttgatgaatccatcaatgaagacaacagtgttgtgtca
ctttctcaggctaagatggatgaactgcagctcttcagaggagacactgtgctgctcaag
ggcaagaagaggagggagacggtgtgtattgtgctctctgatgactcctgctctgatgag
aaagtccgcatgaacagggtggtccgtaacaacctgagggtccgcctgggagatgtcatc
agcatccagccttgtccagatgtcaagtatggaaagcgtatccatgtcttgcccattgat
gacacagttgaaggcatcactggcaacttgtttgaggtgtacctgaagccatattttctt
gaggcctaccggcccatccgtaaaggggacattttcctggtcaggggtggtatgcgtgca
gtagaattcaaagtggtggagacggaccccagtccttactgcatcgtggcccccgacacg
gtcatccactgcgagggggagcccatcaagcgtgaggatgaggaggagtctctcaatgag
gtcggctatgatgacattggaggagtccgtaagcagttggctcaaatcaaagagatggtt
gagctccctctcagacaccctgccctgttcaaggcaattggcgtgaagcctccccgtggc
attctgctgtatggacctcctggaactggaaaaactctgatcgcccgtgctgtcgctaac
gaaactggagctttcttcttcctcatcaatggccctgagatcatgagcaaactggccggc
gagtctgagagcaacctgagaaaagccttcgaggaggccgagaagaacgcccccgctatc
atcttcattgatgagctcgatgccattgcccccaagagggagaagacccatggtgaggtg
gagaggcgcattgtgtctcagctgctgaccctgatggacggcctgaagcagagggctcat
gtcatcgtcatggctgccaccaacagacccaacagcattgacccggccctcaggagattc
ggtcgctttgacagagaagtggacattggcattccagacgctacaggcagacttgagatt
ctccagattcacaccaagaacatgaagctggctgatgatgttgacctcgagcaggttgcc
aatgagacccatgggcatgtgggtgctgatctggctgccctctgctccgaggctgccctg
caggccatcagaaagaagatggacctcattgacctggaggacgagaccattgacgctgaa
gtcatgaactcactggccgtcaccatggatgacttcagatgggccctgagccagagcaac
ccatctgccctgcgtgagactgtggtggaggtgcccaacatcacctgggaggacatcgga
ggtctggatgacgtcaagagggagctgcaggagcttgtgcagtacccagtggagcacccc
gacaaattcctcaagtttggcatgaccccatccaagggtgtgctgttctatggaccacca
ggttgtggtaagacactcctggctaaagccatcgccaacgagtgccaggccaacttcatc
tccattaaaggcccagagctgctcaccatgtggttcggagagtctgaggccaacgtccgt
gagatcttcgacaaggctcgtcaggctgctccatgcgtgctcttctttgacgagttggac
tccatcgccaaggcccgtggtggcaacgtgggcgatggtggcggagccgctgaccgcgtc
atcaaccagatcctgacagagatggacggcatgtccagcaagaagaacgtcttcatcatt
ggtgccaccaacaggcccgacatcatcgacccagccatcctcaggcccggtcgtctggat
cagctcatctacatccccctgcccgatgagaagtcccgcatgaacatcctcaaggccaac
ctcaggaagtctcccattgccaaggaagtggacctggagttcctggccaagatgaccaac
ggcttctctggagctgacttgaccgagatctgccagcgggcctgcaaactggccatcagg
gagtccatcgagaatgagatcagaagggaacgagaaaggcagaccaacccctcagccatg
gaggtggaggaagatgaccccgttcctgagatcagaaaagaccactttgaggaggccatg
cgctttgctcgtcgctccgtcagtgacaacgacatccgcaagtacgagatgttcgcacag
acgctgcagcagagcagaggattcggcagcttcagattcccctccagcaaccagagtggc
agtggaccaagccagggctcatcaggaggcggcggcggcaccgtgttcaacgaggacaac
gatgatgacctctacggctga
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