Alosa sapidissima (American shad): 121715258
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Entry
121715258 CDS
T11137
Symbol
usp39
Name
(RefSeq) U4/U6.U5 tri-snRNP-associated protein 2
KO
K12847
U4/U6.U5 tri-snRNP-associated protein 2
Organism
asad Alosa sapidissima (American shad)
Pathway
asad03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
asad00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
121715258 (usp39)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
asad03041
]
121715258 (usp39)
Spliceosome [BR:
asad03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP specific factors
121715258 (usp39)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UCH
zf-UBP
UCH_1
zf-UBP_var
Motif
Other DBs
NCBI-GeneID:
121715258
NCBI-ProteinID:
XP_041956701
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All DBs
Position
8
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AA seq
496 aa
AA seq
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MATIKREREIDEDDDEVPVKVGRGHDVEDKRSRHCPYLDTINRSVLDFDFEKLCSISLSH
INVYACLVCGKYFQGRGQKSHAYTHSVQFTHHVFLNLHTLKFYCLPDNYEIIDSSLEDIT
YVLKPTFTRQHISGLDKQGRLYRAYDGTTYLPGIVGLNNIKANDYANAVLQALSNVPPLR
NYFLEEENYRGIRRPPGDIMFLLVQRFGELMRKLWNPRNFKAHVSPHEMLQAVVLCSKKN
FQITKQGDSVDFLSWFLNALHGALGGTKKKPSIITKVFQGSMRIFSKKLPHPDLPPEEKE
ALLLTEDYQEVMSEAPFLYLTLDLPTAPLYKDEKEQLIIPQVPLFNILTKFNGNTEKEYK
TYKENFLKRFQLLRLPPYLIFYIKRFTKNNFFVEKNPTIVNFPITSVDLREYLTEEAQAT
EKHTTYDLIANVVHDGKPTEGSYRIHVLHHGTGKWYELQDLQVTDILPQMITLSEAYIQI
WKRRQSEEEEDSHTGA
NT seq
1491 nt
NT seq
+upstream
nt +downstream
nt
atggcgaccataaagcgtgaacgtgaaatcgacgaagacgacgatgaagtacctgtaaaa
gtgggtcgagggcatgatgtcgaggacaagaggagtcgccactgcccctaccttgacacc
atcaacaggagtgttttggactttgactttgagaagctgtgctccatttcgttgtcccac
ataaatgtgtatgcttgtcttgtttgtgggaagtattttcaggggagaggacagaagtct
cacgcctacacacacagtgtacagttcactcaccatgtattccttaatctgcacacactt
aaattctactgtctgcctgacaattacgagatcattgactcctcgctagaggatatcacg
tacgtgctgaagcccacatttactcgtcagcatattagcggactggacaagcagggccgt
ctctaccgtgcctatgatggcaccacttatctgcctggcatcgtggggctcaacaacatc
aaagccaatgactatgccaatgcagtgctgcaggccctgtctaatgtacctcccctgagg
aactacttcctggaggaggagaactaccgtgggattcgccggcctccgggtgacatcatg
ttcctgctggtgcagcgctttggggagctgatgaggaagctgtggaacccgcgcaacttc
aaggcccacgtctcgccccacgagatgctgcaggctgtggtgctctgctccaagaagaac
ttccagatcaccaaacagggggattctgtggacttcctgtcttggttcctcaatgctcta
catggtgctttgggtggcaccaagaagaaaccatccatcatcacaaaagtgttccagggc
tccatgcggatcttctctaagaaactgcctcatcctgacctgcccccagaggagaaggag
gccctcctgctgacggaggactaccaggaggtgatgagcgaggctcccttcctctacctg
accctggacctccccactgcgccgctctacaaggacgagaaagagcagctcatcatccca
caggtccccctcttcaacatcctcaccaagttcaacggcaacacagagaaggagtataag
acgtacaaggagaatttcctgaagcgtttccagctgctacggctgcccccatacctcatc
ttctacatcaagaggttcaccaagaacaacttctttgtggagaagaaccccaccattgtg
aacttccccatcacgagtgtggacctgcgtgagtatttgacagaagaggcccaggctaca
gagaaacataccacctatgacctaatagccaacgtggtgcatgatgggaaaccgacagaa
ggatcctacaggatccacgttttacatcatggcactgggaaatggtatgagctgcaggat
ctacaggttacagatattcttccccagatgatcacgttgtctgaggcgtatatacagatc
tggaagagaagacagagtgaagaggaggaagacagtcacacaggagcctga
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