Alosa sapidissima (American shad): 121715426
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Entry
121715426 CDS
T11137
Symbol
rfc1
Name
(RefSeq) replication factor C subunit 1 isoform X1
KO
K10754
replication factor C subunit 1
Organism
asad Alosa sapidissima (American shad)
Pathway
asad03030
DNA replication
asad03410
Base excision repair
asad03420
Nucleotide excision repair
asad03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
asad00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
121715426 (rfc1)
03410 Base excision repair
121715426 (rfc1)
03420 Nucleotide excision repair
121715426 (rfc1)
03430 Mismatch repair
121715426 (rfc1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
asad03032
]
121715426 (rfc1)
03400 DNA repair and recombination proteins [BR:
asad03400
]
121715426 (rfc1)
DNA replication proteins [BR:
asad03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
121715426 (rfc1)
DNA repair and recombination proteins [BR:
asad03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
121715426 (rfc1)
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Other DBs
NCBI-GeneID:
121715426
NCBI-ProteinID:
XP_041957085
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Position
1:25022788..25033668
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AA seq
1158 aa
AA seq
DB search
MDIRRFFAPTKPAPPKAPLNSSNRTDEEKKPNKKKSVSKTPEEKLPGKRKREKKRAVIDS
DSDEEEQKKRKKEHQKEKADPSVKTEKEKKGPIQYVSDSDSDDAFLSLKKPVENGLKKAG
KDADKKTQKGPTKVSVKSSPKSPVKSPTLSKPKPTSPIKQKVLSSPKQTPTSVLDYFGSS
SVQRSDKKLVASVKRKAPTQDPDESQDDEVIAKQLQMDEDMELEKQIHEDEEFARTLAML
EEAPLAKKARTDTGDRPSSSSSFSSSKQMDRTDHLSQNQKRPSPKKALNDSRDRASPSPS
LSPSKQTSKTDSRHPTPKKTSSKLASLKRRDEEQEHRKKSEKEEKKVISPKREPFHSERA
ATPRTGGPSTPRTGDLTPKTGSAETPGSSKISPKKPETSPEDSEKRRGNSAAFRNYLNRD
GPRALGSKEIPVGADNCLEGLTFVVTGVLESIERDDAKSLIERYGGKMTGNVSRKTSYLV
LGRDGGASKTEKAESLGTQIIDEDGLLELIRTKPGKKSKYEIAAEAENKGAKSKTKTPPR
AQTPKTPQRTPSPRKPRPGEVKGQTTPGRKMASTADVKKELSFGRKSAPEDSGSSLMWVD
KYRPQTLKAVIGQQGDQSCAAKLLRWLKNWYSNHSGEKPAAGRFGRFGGKDDGSTFKAAL
LSGPPGVGKTTTAALVCQELGYSYVEMNASCARSKNTLKSVIAESLNNTSIKNFYSGASQ
TVSKNHVLIMDEVDGMAGNEDRGGIQEMISLIKTSKIPIICMCNDRNHQKIRSLSNYCFD
LRFQRPRVEQIKGAMMSICFKEGLKVQPPALNEIILASNQDVRQVLHNLSMWSAKDKVMT
YDQAKADASNARKDIKMGPFDVCRKVFTKGEETAHMSLIDKSDLFFHDYSLAPLFVQENY
VHVKPAAAGGNLKSHLVLLSKTADSICDGDLVDRQIRLKQTWSLLPTQAIYASVLPGELM
RGYMNQFPTFPSWLGKFSSTGKHSRIVQELASHMCLRTQCSKQAVNLDYLPYLRSALLAP
LQRAGAEGASQSVQLVDDYNLMKEDVDSMMEISTWGGKPDPYSKLDPKVKAAFTRAYNKE
SHLMPYSLQAVKKGKRGGPEPDLTTPDGENNSQPQEEEEEEELADAMIKQKKAKPVKQKA
EDSGKGKGKGKGKGKGKN
NT seq
3477 nt
NT seq
+upstream
nt +downstream
nt
atggacattcggagattttttgctcccacaaaaccagctcctcctaaagcccccttgaac
agcagcaatagaacagatgaggagaagaagcccaacaaaaagaaatcagtgtccaagacc
ccagaggagaagttgccaggaaagagaaagagagagaaaaagagagcggtcatagactcc
gactctgatgaagaggagcagaagaagaggaaaaaagaacatcagaaagagaaagcagac
ccctcagtgaagacagaaaaagagaagaaaggacccatccagtatgtgtctgattcagat
tcagacgatgcctttctgtccttgaagaagccagtggagaatggtcttaagaaggccggc
aaagatgctgacaagaaaacgcaaaagggccccactaaagtgtccgtaaaatcatctcca
aagtcacctgtcaagtcccctactctatccaaaccaaagcctacatctccgatcaagcaa
aaagtgttatcctctcccaaacaaactcccacctcagtactggactactttgggtccagc
agtgtccagcgttcggacaagaaacttgtggccagtgtcaaaaggaaagcacccactcag
gatccagatgagtctcaggatgatgaggtcatcgcaaaacagctacagatggatgaggat
atggagctggaaaaacaaattcatgaagacgaagagtttgcccgaactctagcaatgcta
gaagaggctccacttgctaaaaaggctcgtacggacactggtgacaggcccagctccagc
tccagcttctcttccagtaaacagatggacaggacggaccatctcagccagaaccagaag
cggccctcacccaaaaaggccctcaatgactctagggacagagccagccccagcccaagc
ctctctcccagcaaacagaccagtaagacggacagccggcatcccactcccaagaagacc
agctccaaattagcctccttgaaacgcagagatgaggagcaggagcacaggaaaaagagt
gagaaggaggaaaagaaagtcatctcgcccaaaagagagcccttccactcggagagagca
gccacacccagaacaggaggaccaagtacgccaagaactggtgaccttacacctaaaaca
ggaagcgctgaaacacctggttcaagcaaaatctctcctaaaaagccagagactagtcca
gaggattcagagaagcgccggggaaattctgctgctttccggaactaccttaatagagac
ggtccacgggcacttggctccaaagaaatccctgtgggtgctgacaactgtctggagggg
ctgacgtttgtggtgactggtgttctggagtcgattgaacgtgatgatgcaaagtctctc
atagaacgctatggagggaaaatgaccggaaatgtcagcaggaagaccagttatctggtg
ctagggcgagatggtggagcttccaagactgagaaagcagaaagtttgggcactcagatt
attgacgaagatggtctactggagctgattcggaccaaacctggaaaaaaatccaaatat
gagattgctgccgaagcagagaataaaggggcgaagagtaagactaagacccctcctcgt
gcccagaccccaaagactccacagcgcacacccagccctaggaaaccccgtccaggagag
gtcaaaggtcagacaaccccgggacgtaaaatggcctcgacggcagatgtgaagaaggag
ctctcttttgggcggaagtctgccccagaggattctgggagtagtctgatgtgggtggat
aaatatcgccctcagaccctgaaggctgtgattggtcaacagggtgatcagagttgtgca
gctaaacttctgcgctggctcaagaactggtacagtaaccacagtggagagaagcctgca
gcagggcgctttggtcgctttggaggtaaagatgatggatctacttttaaggctgcgttg
ctgtcaggccctcctggtgtaggcaaaaccaccaccgcagctctcgtgtgtcaggagttg
ggctacagctatgtggagatgaatgccagctgtgcccgcagcaagaacactctcaagtcg
gtgattgctgagtctctgaacaacaccagcattaagaacttctactcaggtgcatctcaa
acggtcagcaagaatcatgtgctgatcatggatgaggtggatggcatggcaggaaatgaa
gacagggggggaattcaggaaatgatttctttgataaagacctccaagatccccatcatc
tgcatgtgtaacgatcgtaaccaccagaaaatccgctcactttccaactattgctttgac
ctgcgcttccagcgaccacgggtggagcagattaagggtgcgatgatgtccatttgcttc
aaagaaggcctgaaggtccaacctccagctctcaatgagattattttagcatccaatcag
gatgtgcgacaggtactgcataatctcagtatgtggtccgccaaagacaaagtcatgacc
tatgaccaggccaaagcagatgccagcaatgccaggaaagatattaaaatgggtcctttt
gatgtgtgcagaaaagtgtttacaaagggagaggagactgcacacatgagtttgattgac
aagtcagacctcttcttccatgactattctctggcaccacttttcgtccaggagaattat
gtacacgtcaaacccgctgcagcaggtggtaacctgaagagccacctggtgctgctgagc
aaaactgcagacagcatctgtgatggagacctggtggaccgacagatccgtctgaaacag
acctggtccctgttgcccacacaggccatctatgccagcgtgctgccgggtgagttaatg
cgtggatacatgaatcagtttcccacgttccccagctggctgggcaagttctcctccacg
ggcaaacacagccgcatcgtccaggagctggcttctcacatgtgtctgaggacccagtgc
agtaagcaggcagtaaacctggactacctgccctacctgcgctcagctctgctggcgccc
ctgcagcgggccggtgcagagggagccagccaatcagtgcagctcgtagatgactacaac
ctcatgaaagaggacgtggacagcatgatggagataagtacgtggggaggcaagccggac
ccctactccaaactggaccccaaggtgaaagcggctttcacaagagcctataacaaagag
agccacctgatgccatactcgctgcaggctgtgaagaagggcaagcgaggaggccctgag
cctgacctaaccacaccggacggcgaaaacaactcccagccacaggaggaagaggaggag
gaggaactagctgacgccatgatcaagcagaagaaggctaagcctgtgaaacagaaagca
gaggattctgggaaaggcaaaggcaaaggcaaaggcaaaggaaaaggcaagaactaa
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