Alosa sapidissima (American shad): 121715434
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Entry
121715434 CDS
T11137
Symbol
ttc37
Name
(RefSeq) tetratricopeptide repeat protein 37 isoform X1
KO
K12600
superkiller protein 3
Organism
asad Alosa sapidissima (American shad)
Pathway
asad03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
asad00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
121715434 (ttc37)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
asad03019
]
121715434 (ttc37)
Messenger RNA biogenesis [BR:
asad03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ski complex
121715434 (ttc37)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_1
TPR_2
TPR_19
TPR_11
TPR_17
TPR_8
TPR_16
TPR_CcmH_CycH
TPR_12
TPR_14
TPR_9
ANAPC3
ARM_TT21_C
ANAPC8
HAT_PRP39_N
ChAPs
COG4_N
TPR_10
PknG_TPR
TPR_30
Motif
Other DBs
NCBI-GeneID:
121715434
NCBI-ProteinID:
XP_041957097
LinkDB
All DBs
Position
8:22466874..22487834
Genome browser
AA seq
1566 aa
AA seq
DB search
MSSKEVKAALKSAREAIKNKEYKEALKHCKNVLKLEKNNYNAWVFIGVAAGELDQPDQAK
AAYKKAAELEPDQLLAWQGLANLYEKNNETDKSELPVVYQKLITLYESSDKVKCQEVSRK
LVDLHLQEKDYLQVARVWSRLLQLKEEGEADQAEQLQLWREMAQILQDSVEEQDNETQQH
LITAFEKAMTLTESAPCEDHKKLSMDFLTCLSKLPHEEAKLKEVCEMMLSTYPSQKFPLE
VLCSHYLKSGACSEEAVGCFRRMLELDAGSGPALLGLGVTALDQKKYEDAIKSLSQGLKQ
MRSSVVGWYSLAQAQLKIHKYTDSAKACSQGLSCCKDSDTELSQKLQKLKLESLVRSGTE
TTSDEALDTLTQISDFRNDPVLLSFKGRIYLQKGQIEQALQVSTELGTSHPDSVEAVTLK
GLIHQARDELQQAEESFQKALSICPDSGELYFLLGRLYWLMGEEARRDRNKAHTHLLKAA
KLDPHLGSVFRYLGHYYREVARDLGRAHGCYKRAFELDGSDGEAGAAAVDISMEQGDMES
ALAILTSVTERATPGSAKWAWMRRGLYHLKINEHQQAVTDLQAALRADPMDWVCWECLGE
AYLHRHSFTTALKAFTKAHLLQPDSIYSLYQMAAIKQILGKSKEAAGEYMKIVQREDYVP
ALKGLGECLLALARGALEDYLDGRAVDFIQSAIEYLFRGVQQRPDLSCLWKLLGNACSLS
GSVAPERAHVMVPGALSGDSPSDQNHRLDQRTLLRLGERCYGQALKLMPEAASLWCDLGI
NYYRQCQKLLPLNQEQDIQTLLEKSLQCIKKAVMLDSANNSYWNALGVVAMATGVENFAL
AQHCFIKSVKVEPNNVVAWTNLGVLYLKKENIELAHEAFKVAQSLEPLYVNCWIGQALIA
EMVDSADTMDLFRHTTELNTHTEGVKGYAHFVCSTLLDKSNRDSELYRYNILQMNAISAA
QVALCKYTERIQTDPTAFVMLGYLNEHLQLKRQATVAYRRAVELLQTSPHVDELSFALRN
YGRALCDTGQCEDAVRVYSSTPLGELQDLVGLALAYFRAGHLQESLAAYEKALSVASTEK
ERAYILTALALLQHRLGSMDTAKTLLFKCSLLKEPISESLLCLCALGLVHGDGTLATAAL
SELLKLTGGPGGAVEQRCLLTCALLALQGHYSAVPREAARAVHSNPGNATLWALLSRLVP
QYHPRQAKGGAVAGSVACLSSMTQGKRALLFSGLSQLAAGRHAGEDRSRNGLKTIQRAVL
LCPDDLAAWAGLMAASYAENTACALSGSAPLRQGLERPLMAAIAEKAQAVPVEERPLAHA
VESWALQQALSGLRQATHYAQAEALCTQVLSVSPDHPAVLLQLRQLQCERLLVEQAGTAL
PVPVLEQLSAAVMANPTSVSAWHWLAGLYFSQGLLAQASVAYRQSLQLASQLGHYSGKIG
GLLRLALLALTPCMAKHPGSDWKSLVVEATTEALKLGPSPVALLLQALLQFSTKMEARET
RRLLERLVYYASPEQPDTVSSVARWYLLRHLHAKDDLELMDKLVEQAAAAGDSRLLEFHK
QICLSG
NT seq
4701 nt
NT seq
+upstream
nt +downstream
nt
atgtccagtaaagaggtgaaggctgccctgaaaagtgcaagggaagccatcaagaacaaa
gaatacaaagaagcacttaaacattgcaagaatgttctcaagctcgagaagaacaactac
aatgcctgggtgttcattggagtggccgctggggagctggaccagcctgaccaggccaaa
gcagcatacaagaaggctgccgagctcgagcctgaccagctactggcatggcagggattg
gcaaacctatatgagaagaacaacgagacagataagagtgaactccctgtggtataccag
aaactcatcacattgtatgaaagttcagacaaagtcaagtgccaagaggtgagcaggaag
ctggtggacctccacctccaagagaaggactatttgcaggtggctcgtgtgtggagcagg
ctgctgcagctgaaggaggagggtgaggccgaccaggccgagcagctgcagctctggagg
gagatggcgcagatcctacaggacagcgtggaggagcaggacaacgagacccagcagcac
cttataactgcttttgagaaagccatgactctcacagaatctgccccttgtgaagaccac
aagaaactctcaatggacttcctcacatgtctgtcaaagcttccacatgaagaagccaaa
ctgaaagaagtctgtgagatgatgctgtccacttacccctcccaaaaattccccttggag
gtcctgtgctcacactacctaaagtcaggagcatgcagtgaggaggccgttggatgcttc
aggcgtatgctggagttggacgcaggcagtgggccagctctcctgggcctgggagtcacg
gctctggaccagaagaagtatgaggacgccatcaagagcctgtctcagggattgaagcag
atgcgttcctctgtggttggctggtatagcttggcccaggctcagctcaagattcacaaa
tacacagatagtgccaaggcgtgcagtcaaggactgagttgctgtaaggacagtgataca
gaattgagccagaagttgcagaagctcaagctggagtctcttgtgaggagtggaactgaa
accacatctgatgaagcgctggacacactcactcagatatctgatttcagaaatgatccc
gtcctgttatcttttaaaggcaggatctacttgcagaaaggccaaattgaacaagcattg
caggtatcaacggagttggggacgtcccatcctgactctgtagaggcagttacgctgaag
gggctcatccatcaggcacgggatgagctccaacaagcagaggaaagcttccagaaggcc
ctctcaatctgcccagactcaggagagctctacttcctgttgggccgactctactggctc
atgggagaagaggcgcgtcgagatcggaataaagcacacacgcacctcctcaaggctgcg
aagcttgaccctcacctgggctctgtgttccgctatctgggccactactaccgggaggtg
gcccgtgacctgggccgagcgcatggatgctacaagcgggcctttgagctggacggcagc
gatggtgaggcaggggcggcagcagtcgacatcagcatggagcaaggagacatggaatct
gccttggccattttgacgtcggtgactgagagagccacccctgggtcagccaagtgggcc
tggatgagaaggggcttatatcacctcaagatcaatgagcaccagcaagctgtcacagac
ctgcaggcggcgctgcgggcggaccctatggactgggtgtgctgggagtgcctgggcgag
gcctacctgcaccgccacagcttcaccactgcgctcaaggccttcaccaaggcccacctg
ctgcagcccgactccatctacagcctctaccagatggccgccatcaagcagatcctgggc
aagtccaaggaggctgccggagagtacatgaagattgtccagcgagaggactatgtacct
gcgctaaaaggtcttggagagtgccttctcgccttagcacggggtgcgctggaagactac
ttagatgggagagcagtggacttcattcaaagtgccattgaatacctgttcaggggtgtc
cagcagcgtccggacctgtcgtgtttgtggaagctgctgggcaatgcctgtagtctgagt
ggttccgtggctccagagagggctcacgtgatggtcccaggggccttgtcaggagacagc
ccgtcggatcagaaccaccgcctggaccagagaacactgctgaggctgggcgagaggtgc
tatggccaagccctgaagctgatgccagaggctgccagtctgtggtgtgaccttggcatc
aactactaccgccagtgccagaaactcctccccctcaaccaggagcaggacatccagacg
cttctggaaaaatccttacagtgtataaagaaggctgtcatgttggacagtgccaataac
agctactggaatgccttgggagttgttgccatggccacaggtgttgaaaactttgctctg
gcacaacactgtttcattaaatcagtaaaggtggaaccaaataatgttgtagcttggacc
aacctgggtgtattgtacctgaaaaaagaaaacattgagcttgcccatgaggcctttaag
gttgcacagtctctagagccgctatacgtcaactgctggattggacaggctctgattgca
gagatggtggacagcgccgacaccatggacctgttccgccacaccacagagctcaacaca
cacactgagggagtgaaaggctatgcccactttgtgtgctccacgctgctggacaagagc
aaccgggactctgagctctaccgctacaacatcctgcagatgaacgccatctccgctgcc
caggtggccctctgcaagtacacagagaggattcaaacagaccccacagcttttgtcatg
cttggatatctcaatgaacacctacaactcaagagacaggccactgtagcctacagaaga
gctgtggaactgctccagacctctcctcacgtagacgagctcagcttcgccctcagaaac
tacggccgtgccctctgtgacacaggccagtgtgaggatgctgtgcgtgtgtactcctcc
acgccactgggggagctgcaggacctggtggggctggccctggcctacttcagagcaggc
cacctgcaggaaagcctcgctgcctatgagaaggcgctgtctgtggcctctacggagaag
gagagggcctacatcctcacagcactggctctgctccagcacagactgggcagcatggac
acggccaaaacgttgctcttcaagtgctcgttgctgaaggagcccatatcggagagcctg
ctgtgtctgtgcgctctgggcctggtccatggggacggcaccctggccacggcggcactc
tccgagctgctgaagctgaccgggggcccagggggcgctgtggagcaacgctgcctcctc
acctgtgccctgctggcactgcagggacactacagcgccgtgcccagggaggctgccagg
gccgtgcacagtaacccaggaaacgccaccctctgggccctgctctcccgcctggtgcca
cagtaccaccctaggcaagccaaaggtggtgctgtcgctggaagtgtggcctgtctctcc
agtatgacacaggggaagagggcgctactgttcagtggtctgagtcagctagctgctggc
agacacgcgggtgaggaccgctccaggaatggcctgaagaccatacagagagccgtgctg
ctatgtccagatgacctggctgcctgggctgggctgatggccgcttcctatgcggagaac
acggcctgcgctctgtccggctctgcccctctcagacagggtctagagcgccccctgatg
gccgccattgcagagaaagcccaggcagtccctgtggaggagcgtcccctggcccatgct
gtggagagctgggcactgcagcaggccctctcaggcctcaggcaggccacacactatgcc
caggctgaagccctgtgcactcaggtgctcagtgtgtctcctgaccaccctgccgtgctg
cttcagctgaggcagctccagtgtgagcgcctccttgtggagcaggctggaactgcgctg
cccgtgcctgtgctggagcagctctccgcagctgtgatggccaaccctacctcagtgtct
gcctggcattggttggcagggttgtatttctcccagggcctgctggcccaggcctcggtg
gcatacagacagagcctgcagctggcctctcagctgggccactacagtgggaagattggg
ggcctgctgaggctggcactactcgccctgaccccctgtatggccaaacatccaggaagt
gactggaagagcctggtcgtggaggccaccactgaggccctgaaactgggtccttctccc
gtagcccttctcctccaggctctgctgcagttctccaccaagatggaggccagagaaacc
cgtcgtctgctggagaggcttgtttactacgcatctcctgagcagcctgacaccgtgtca
tctgttgcacgttggtatctcctccgccatctccacgccaaagacgacctggagctcatg
gataaactggtggaacaggctgcagctgccggagactcaagactcctggaattccacaaa
cagatctgcctgtcaggctga
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