Alosa sapidissima (American shad): 121715762
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Entry
121715762 CDS
T11137
Name
(RefSeq) calcium-activated potassium channel subunit alpha-1-like
KO
K04936
potassium large conductance calcium-activated channel subfamily M alpha member 1
Organism
asad Alosa sapidissima (American shad)
Pathway
asad04270
Vascular smooth muscle contraction
Brite
KEGG Orthology (KO) [BR:
asad00001
]
09150 Organismal Systems
09153 Circulatory system
04270 Vascular smooth muscle contraction
121715762
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
asad04040
]
121715762
Ion channels [BR:
asad04040
]
Voltage-gated cation channels
Potassium channel, calcium- and sodium-activated (KCa/KNa)
121715762
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Gene cluster
GFIT
Motif
Pfam:
Slo-like_RCK
Slowpoke_C
BK_channel_a
Ion_trans
Ion_trans_2
Motif
Other DBs
NCBI-GeneID:
121715762
NCBI-ProteinID:
XP_041957609
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All DBs
Position
8:15817491..15834877
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AA seq
1029 aa
AA seq
DB search
MEGFSKPEPHLLLPYCVYRGHRVWWVHLCSSLSVFLGGLLLLLLLRSCHFGLNTVGTVLP
EWTWKRQGKAMLTNVSLSSALKEWAGKVISAQHLSGQILMVIFFCFNTGSFILYLLQTPE
PVEYCIEKHGIASLIDLIFNIIHLLHFGLRFLAAQDLLQFWVEMKTLVDFITIPPSFIVL
FTRRAWIGLRFIRALNILELPLILQILGILKSNTSLKLSRLIGIIVGTLLTSAGLIHLFE
SSGDPWLDFRNKAPLSYFNCIYFLVVTMSSVGYGDVNMNTVLGRLYVTVFIAIGLGLFAT
FVPEVVEIVINRERFGGRYKDEGRLHVVVCGHITLASVSAFMREFLHEDRGDVNIRVIFL
GNFCPDQELEAFFNRWFMHVAFFQGSVLKQKDQERVMLNKASACLILCDRTTTDPHNEDV
TNLMRVISIKQYCPNTRVIVQMLKHNSKAYLQKVSNWEWSLGDDVICLSELKLGFMAQSC
LVPGISTLLSNLFSMEGSVEKEDHSWRKLYKEGMYMEIYTEYLSSTFTGLSFAEACKLCF
LKLQMILIGIEYQSGEEEFCVLVNPPSHIKIKHKTLGFLIASDAADARRASFYCCICHSD
IDDISRMKPCKCVDVSISSSSLLSIRQPSLGVLPCLEQEDGEYVSEPLESEEVMLDSTGM
FHWCNPISLEDVSLTRDGASVLPLWQHVVVCLFGDEKSNLLGLGDFMMPLRASSLTTPEL
KTVVFLGDPNYFRREWPNIQYFPNIYFLPGSPLCTADLRAVRVETCAMCVVLSTFSNPNH
LESSMQDKETILSCVNLFHTRFTREPTRPQGLHGRRSSYGFPGPRLLEASPPPPKKGTTV
PLLVELVNTSNVQFVSDVEELKSCPGMTLTQAFAVGSVFSMDLLDSLMAATYFNANVSNL
INTLVTGGDTPALEAQLAEDNHLREGDMSPRLNMLRQRSKLAQLQLDDEPLCRLRCLKYK
DLFVQALDSLEILCFGLYRLLDPPNPFMKRFVITTPPGDLVLDPADKVFCSVPFHQSHTL
TRRRSQSPI
NT seq
3090 nt
NT seq
+upstream
nt +downstream
nt
atggagggctttagcaaacctgagccacatctgctcctcccttactgtgtctaccgtggt
catcgggtatggtgggtccacctgtgctcctctctgtctgtcttcctgggagggctgctg
ctccttttactcctcaggagctgccactttggcctcaacacagttggcacggtactgcct
gaatggacgtggaaacgtcagggaaaagctatgttgaccaacgtaagtctgagctccgct
ttgaaagaatgggcagggaaggtcatttctgcccagcatctctcaggacaaatcctgatg
gttatttttttttgcttcaacactggatcattcatactgtatctactccaaacaccagaa
cctgttgagtattgcatagagaagcatggcattgcatctcttatagatctgatcttcaac
ataatccatcttcttcattttggactcaggtttcttgcagcacaggatctgcttcagttc
tgggtggaaatgaagacgctggtagatttcataaccattcctccatccttcatcgtgctc
ttcacacgtcgagcatggataggactaagattcatcagggcactgaacatcctagagctt
ccattgatcctgcaaatacttggcatactcaagagcaacacatctctaaagctgtcccgc
cttattggcattatcgtaggaactctcctcacctctgctgggctcatccatctgtttgag
agctcaggtgacccctggctggattttcgtaataaggcacctctcagctacttcaactgc
atctacttcctggttgtcaccatgtcatcagtgggttatggcgatgtgaacatgaacact
gtgctgggtcgcctttatgtcacagtcttcattgcaattggcctgggcttgtttgctacc
ttcgtcccagaagttgttgagatcgtaataaacagggagagattcggtgggagatataaa
gatgaaggaagactgcatgtagtggtgtgtggccacatcactctggctagtgtctcagca
ttcatgagagagtttctccatgaggacaggggagacgttaatatccgggtgattttcttg
gggaacttttgccctgaccaagaattggaggctttcttcaacaggtggttcatgcatgtt
gccttcttccaaggctctgttttaaagcagaaagaccaggagagagtgatgctgaataaa
gcgagtgcttgcttgattctatgtgatagaactacaacagacccacacaatgaggatgtc
accaatctcatgagggtgatctccattaagcagtactgccccaacaccagagtcattgtg
cagatgttgaaacacaacagcaaggcttacctgcagaaggtgtccaactgggagtggagc
ctgggcgacgacgtcatctgcctgtccgagctcaagctgggcttcatggctcagagctgc
ctggtgccaggaatctccacgctcctgtccaacctcttcagcatggagggctcagtggag
aaagaagatcattcttggcggaagctttataaagagggcatgtacatggagatttacact
gaatacctctccagcactttcacaggtctctcatttgcagaagcctgcaaattgtgtttc
ctgaagctgcaaatgattctgattgggatagagtatcaaagcggggaggaggagttctgt
gttttagtgaatcccccgagccatatcaagattaagcacaagaccctgggcttcctcatt
gcaagcgatgcagcagatgcacgtagagccagtttttattgttgcatttgccacagtgac
attgatgatatctccagaatgaaaccatgcaagtgtgtggatgtttccatatcctcatct
tcactcctgagcattagacagccatcattgggagttctcccctgcctggaacaggaggac
ggtgagtatgtctcggagcctttggagagtgaagaggtgatgctggactccactgggatg
ttccactggtgcaaccccatctcactagaggacgtttcactgaccagagatggggcgtcg
gtgctgcccctgtggcagcatgtggtggtgtgtctgtttggggacgagaagtccaacctg
ctggggctgggcgacttcatgatgccgcttagggccagcagcctcaccacccctgaactc
aagaccgttgtatttcttggagaccccaactacttcagaagggagtggcccaacatccag
tactttcccaatatctacttcctacctggctcacctctgtgcacggccgacctgcgggcg
gtgcgggtggagacctgtgccatgtgtgtggtcctcagcaccttcagcaaccccaaccac
ctcgagtcatccatgcaggacaaggagaccatcctgtcctgcgtcaacctcttccacaca
cgcttcacccgtgagcccacccggccccagggcctacacggccgccgcagcagctatggc
ttcccaggacctcggctactagaagcctcgccacctcctccaaagaaaggaaccacagtt
cctctgctggtggagctcgtgaacacctccaacgtccagtttgtgagtgatgtggaagag
ctaaagagctgccccggtatgactttgacacaggcgtttgccgtcggctcagtgttctcc
atggacctgctggactctctcatggcggctacatacttcaatgccaacgtgtccaacctg
atcaacacgctggtgacgggcggagacacgcccgccctggaggcccagctggcagaggac
aaccatttgcgcgagggcgatatgagcccgcgactgaatatgctgcgccaacgctccaaa
ctggcacagctgcagctggatgacgaacccctgtgccgcctgcgttgcctcaaatacaaa
gatttgttcgtccaggctttggactcactggagatcctgtgctttgggctctaccggctg
ctggatcctcccaacccttttatgaagaggtttgtgatcacgacccccccaggggacctt
gtcctggatcctgcagataaggtcttctgctcagtacccttccaccagagccacacgctt
acgcggcggagatcccaaagtcccatctag
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integrated database retrieval system
