Alosa sapidissima (American shad): 121715882
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Entry
121715882 CDS
T11137
Symbol
gtf2h2
Name
(RefSeq) general transcription factor IIH subunit 2
KO
K03142
transcription initiation factor TFIIH subunit 2
Organism
asad Alosa sapidissima (American shad)
Pathway
asad03022
Basal transcription factors
asad03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
asad00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
121715882 (gtf2h2)
09124 Replication and repair
03420 Nucleotide excision repair
121715882 (gtf2h2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
asad03021
]
121715882 (gtf2h2)
03400 DNA repair and recombination proteins [BR:
asad03400
]
121715882 (gtf2h2)
Transcription machinery [BR:
asad03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
121715882 (gtf2h2)
DNA repair and recombination proteins [BR:
asad03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
121715882 (gtf2h2)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ssl1
VWA_2
C1_4
Zn_ribbon_GTF2H2
VWA
HMBD
HscB_4_cys
Motif
Other DBs
NCBI-GeneID:
121715882
NCBI-ProteinID:
XP_041957842
LinkDB
All DBs
Position
8:24248957..24253773
Genome browser
AA seq
392 aa
AA seq
DB search
MDEEPERTKRWEGGYERTWEVLKEDESGSLKATVEEILFQSKRKRVIESHGQVRLGMMRH
LFVVVDTSRTMDDQDLKPNRLTSTLKLLEFFVDEYFDQNPISQIGIITTKNKRAEKLTDL
AGNPKKHITALKKAVDTTCIGEPSLYNSINLAMLTLKHMPGHTSREILIIFSSLTTCDPA
NIYDLVKTLKALKIRVSVIGLSAEVRVCTVLTRETGGTYNVILDESHFRELLMLQVKPPP
ASSSSECSLIRMGFPQHIIASTSDQEARPSFSMAHLDSTGGPGLSLGGYYCPQCRAKYTE
LPVECRVCGLTLVSAPHLARSFHHLFPLDAFKESPLEEHAGERFCQACQGELKDQSVFTC
PVCRSVFCVECDLFIHDTLHCCPTCLHNQGAS
NT seq
1179 nt
NT seq
+upstream
nt +downstream
nt
atggatgaagaaccggagagaaccaagaggtgggaaggaggttacgagcggacgtgggag
gtgcttaaagaggatgagtctggatcgctgaaggccacagtcgaagagattctttttcag
agcaaaaggaaaagggtcattgagagccatgggcaggttcgacttgggatgatgcggcac
ctgtttgttgtggtggatacttcccggaccatggatgaccaggacttaaaacctaatcgc
ctgacctctaccctaaagctactggaattttttgtggacgagtactttgaccagaatccg
atcagtcagatcggaattataaccactaaaaacaagagggcagagaaactgacagacctt
gctggtaacccaaagaagcatatcactgccctaaagaaagcggtggacactacatgtatt
ggagagccttctctctacaactccataaaccttgccatgctgacgcttaaacacatgcca
gggcacaccagcagagagattctgatcatcttcagcagccttactacatgtgaccctgca
aacatttatgatcttgtaaagactctgaaagccctgaagatccgtgtgtctgtgataggc
ctgtctgcagaggtgcgagtgtgcaccgtcctcacgcgagagacgggggggacctacaat
gtgatcctggatgaaagccatttccgtgagctgttgatgctgcaagtgaagcctccccca
gccagctcctcttctgaatgctccctcatccgcatgggtttcccacaacacatcattgct
tccacatcagatcaagaagccaggccatccttcagcatggcgcacttggatagcactggc
ggtcctggactgagtctcggaggatactactgcccccaatgcagggcaaagtacaccgaa
ttacccgtggagtgcagagtttgtggcctgacattggtgtctgcacctcacctggcacga
tccttccaccatctcttccccctggatgccttcaaggagagtcccctggaggagcatgca
ggagagaggttttgccaagcctgtcaaggtgaactgaaagaccaaagtgtgttcacttgc
cctgtgtgtcggagtgtgttctgtgtggaatgtgacctcttcatccacgacaccctgcat
tgctgccccacctgtctgcacaaccaaggagcgtcctga
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