Alosa sapidissima (American shad): 121716009 Help Entry 121716009         CDS       T11137                                  Symbol dmxl1 Name (RefSeq) dmX-like protein 1 isoform X1   KO K24155   rabconnectin-3a Organism asad  Alosa sapidissima (American shad) Pathway asad04142   Lysosome Brite KEGG Orthology (KO) [BR:asad00001]  09140 Cellular Processes   09141 Transport and catabolism    04142 Lysosome     121716009 (dmxl1)  09180 Brite Hierarchies   09182 Protein families: genetic information processing    04131 Membrane trafficking [BR:asad04131]     121716009 (dmxl1) Membrane trafficking [BR:asad04131]  Exocytosis   Small GTPases and associated proteins    Rab associated proteins     121716009 (dmxl1)  Endosome - Lysosome transport   Acidification regulators    Rabconnectin-3 complex     121716009 (dmxl1)    RAVE complex     121716009 (dmxl1) BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  Rav1p_C Beta-prop_THOC3 WD40 Beta-prop_WDR3_1st Beta-prop_WDR5 WD40_Prp19 WD40_CDC20-Fz WD40_WDHD1_1st Beta-prop_EML_2 Beta-prop_WDR36-Utp21_1st Beta-prop_TEP1_2nd Beta-prop_WDR3_2nd WDR55 Beta-prop_IFT140_1st Beta-prop_WDR90_POC16_2nd WD40_Gbeta EIF3I WD40_MABP1-WDR62_2nd Beta-prop_WDR36-Utp21_2nd Beta-prop_HPS5 Beta-prop_DCAF4 Beta-prop_EML PEP5_VPS11_N Beta-prop_DCAF12 Beta-prop_VPS8 NBCH_WD40 Beta-prop_IP5PC_F Beta-prop_LRRK2 Motif Other DBs NCBI-GeneID:  121716009 NCBI-ProteinID:  XP_041958055 LinkDB All DBs Position 8:complement(3654686..3693677) Genome browser AA seq 3052 aa AA seqDB search MNLHQVLTGAVNPGDNCFSVGSLNNVPFTAYASGCDIVILGSDFERLQIIPGAKHGNIQV GCVDCSQQGGQIAASYGNIVCVFEPIPLLNPEKTQTQKFGYQWQKSGQFVLQSIAHNLAW NPAGMQLLTGSSSLQLWSNESYTCGAAEEVSSSSTEGHNTWRCIWQCKTASPIRFLKFSP GGEFFATAGQDDCLVKVWYGTSSWQWDAGKLFTPPEQSSLGGLDFSFIYLAHPRSVTGFS WRKTSKYMPRGAVCNVLLTCCKDSVCRLWAETLLPSDCLLSGLKHNNPGNHQNYGDPNRL ARDKKLPANGKSPNPLELNLQESWGGSQRGILAHTSLLPQQQGKHYSHKPIQPHANALCH FHIAASINPATDIPLLPSISSLNGTDEEEPGGPFTVHWLNNKELQFTLAMEVLLQMLRSA QDSPSLAPAAADNTADAMFLEDGSGNGGQSPPQLEAGMDVAAVEQQVELLLEDWNRSADM LFSIHPTDGSLLVWHTDWLDEYQPGMFRQAQVSFVSRIPVAFPTGDANSLSRSVVMYACN KNVDLAIQQGRQQQQQRPSGGGLPRSSSLISCFGHQGKGSATGSGSLRLSIFTPSVLMIS KHADGSLNQWAVSFAEDSAFSTVLSVSHRSRYCGHRFHLNHLACHSLLPLLLTTSHHNAL RSPTPAAAGPVNALSSSPSSTGRHSRGLLGAVPQDPNAIYSELILWRVEPVGPLSFSGGV SELARVNSLHASAFANVAWLPTLIPSNCLGEYGSSPSACFVANDGHSLRLYQAVIEAKKL LSEVSNPENSKSVGEAFNIISQQSTARPGCIIELDVITDFQGKQTQLLHVFEEDLILGSQ RPDGEAQEAPPTDSACGQSVFSARFFLVVMEATPTGRSLLHMWLLQLSAEPVSSGEASTP AGPDQSGSGLSFGQLSSPGQPQRSGGSPCGLHGACRLALHSVRVFSQELELPAGVEVIRV TPAAGHLSSSSLQPAGRAPYLLATSCSDAQVRFWRCGLAPQPLVENQSEYVWEEWPLLVE EGSANSSAFSVSSEPVAVCCCHTSRVVVAYRDSTGSQGDQPKDSPLLVSIFQCESTGGSQ WVLEQTLQLDSPSEASWDRRLSTGLANGKHGGGDECPFSGRSTVHLDWVSREDGSHILTV GVGSRLHMYGPLLVKPPELGLSDGGRDGAWDASRLVLLRAVDLVSSVEGSLPVPVSLSWV RDGILVVGMDCEMHVYSQWQPPAPARSASVSRGTDSGSVSSLLAAAKQDSHTASPVTSRQ PLTRSLTSLAQKLSSAGGKRGGPELPAQLEDSGLFEAAHHLSPTLPQYHPVQLLELMDLG RVRRAKAILSHLVKCVAGEGVVLKGEEGSACASGRQRSRTFSAGGGGTSRDAKLFQRPEA ASDYAEIESIPPLPLYALLAADHDSSGGATEEPVSAGPDSGRGPGPRSNPPSAYEQLFQS PGMPSSADEPPDPFQDDDEDGEKAKVIDLSQYGPTAFGPEHAQVLSSYLLQASLPGLTRM EQMSLMALADTVASTRTDIGESQGKAQGGETLDDCGLRFLLAVRLHTFLLTSLPPAHRAQ LLHQGLSTCHYAWAFHSEAEEELLNMLPVLQKGDPAWTELRAMGLGWWLRSTPRLRRCIE KVAKATFQRNNDPLDAALFYLAMKKKAVVWGLYRSQKNAKMTEFFSHNFTEDRWRKAALK NAFSLLGKQRFQHSAAFFLLAGSLKDAVEVCIEKLQDLQLALVITRLYESEFEISSTYKR ILQRHVLGQDPHMPPHSDPFLRSMACWVLDHYSRALDTLLEPPASAVDQSGSSEHKAQQG PVAMSPCNPQVFNFYTYLRTHPLLLRRHLGSQERRGRLTAEGREEDSVTLVERRLFFTAA YAHLQAGCPLLALEVLSRLPSAIKTSSPPGPDSPSHELSADQSSNATEPDWSQPLFNGFG SACDSPSSFNPSRSDSALSLDWSQPSASMVDEPLDLKWDSDKDEDDEEEEEEGETKQAEV DEAPVSSSTRAFPDPSAASSPAQAPSEAVSSPAPKALAGDDIQAAQLKFRACLKLLTSEL RTLASGCPLDGGRLRQQLAVWLQREVEALECCCGYSPCPPTPQGSQLAGDSHLCLSPVAE ALSGGAAAGRVGAGSGAEAVAAQGRRQWLQRNQQLLRIFLSYCSLHGSHGGGLASVHMEL ILLLQESQQDDSMCSAVISPPPPATIPLLLSCMGGSRTVVANPVSHLTSITHDILRTINA LDSPPHPDSVSSKIYVMHALASSLSACIYQCLCDGHPYSQVNGIMGPVYQSALHSQHPPG RGLSTEETVLPNTPPAQWPGVAALVRLLSACGGEEGRAGLGVLLCEVLTAVFLSLFVHGL ATHSSAQLFRVLAHPLNSKLWVAVFGGGARLPTVTKDAPTVAAVAHEESDRKQKRFRLRS SRSSSREAPAESPPSPPTPPSEPRPSSVTERFVQPELSIWDYFIAKPFLLPSDTRLVYDS EESLGSEDEEDEDEYTDAFDSSSPLREHSNHNSYSWCLMRLAMVQMVLSSLRSFYPMAGH DLMDLPVGSPLCHAVLKTLQRWEQVLLKRLEIFGGPPPKYISTHPQDDSCAPGPALLRHK ALYEASNTPFRSQQHAALPVRRLWQYLVKQEEVQETFIRNIFTKKRDQNESLEDSRDYGK CSGVDEPNLNQIEADLGYPGGKARIIHKESDIITAFAINKANRNCLVIASTHDIQELDVS SILATQILTWIDDEAEVEAKGGDEFLVVHARDDFTTLHGTTPYTHSSPGTPINLPWLGSM QTGRGASVLIKRNINNVRRMASHPTLPYYLTGAQDGSVRMFEWGHSQQIICFRSPGNSRV TRIRFNYQGNKFGIVDADGALSLWQTNTTGNTPKPFMTLQCHNKTAHDFVFVGSSSLIAT AGFSTDNRNVCLWDTLVTPANSLVHAFCCHETGATVLAMAPKQQLLLAGGRRGWISVLDL TQRQQRQSFQAHDSPVKALAVEPSEGCFISGSAEGNIKVWSLLTQTLLHSFPNEHARQSL FRNLGTGVMQVEAAPSNQVFSCGADGTMKLRVLPDRLSVQASRARNNVKFII NT seq 9159 nt NT seq  +upstreamnt  +downstreamnt atgaatctgcatcaggtactgactggggcagtgaaccctggggacaactgcttttctgtg ggcagcctgaacaatgtgcctttcacggcctacgcctccggctgtgacatagtgattctg ggcagtgactttgagaggcttcaaatcattccaggagccaagcacggaaacatccaggtg ggctgtgtggactgctctcagcagggcggccagatagcagcctcctatggaaacatcgtg tgtgtgtttgagccaattcccctgctgaacccagagaaaactcaaactcagaaatttggc taccaatggcagaagagcgggcagtttgtattgcagtcaattgcacacaacctggcatgg aaccctgcaggtatgcaactcctcacaggctccagtagcctgcagctgtggtcgaatgag agctacacctgtggggcggccgaggaggtgtccagctccagcactgaaggccacaacacg tggaggtgcatctggcagtgcaagacggcctcccctattcgcttcctgaagttctcacct ggaggagaattctttgccacagctggtcaggatgactgcttagtgaaggtgtggtacggt accagcagctggcagtgggatgctggcaagctcttcaccccacctgagcagagctccctg ggtgggctggacttctccttcatctacctggcccacccccggtcagtcaccggcttctcc tggaggaagaccagcaagtacatgccaaggggtgcggtgtgcaatgtgctcttgacctgc tgcaaggacagtgtgtgtcgtctctgggcggagacactgttgccaagtgactgcctgctg tctggactcaagcacaataaccctggcaaccaccagaactacggtgaccccaaccggctg gccagggacaagaagctcccagctaatggcaaatcaccaaatccactggagctcaacctg caggagtcgtgggggggttctcagcgtggcattcttgcccacaccagcctgcttccccag cagcagggcaaacactacagccacaagcccatccagccccacgccaacgcactctgccac ttccacatcgccgccagcatcaacccggccacagatatcccgctgctgccctccatctcg tcgctgaatggcacagacgaggaggagccgggcgggcccttcacagtgcactggctcaac aacaaggagctgcagttcactctagccatggaggtgctgctgcagatgctccgcagcgct caggacagccccagcctggcccccgccgccgccgacaacaccgctgacgccatgtttctg gaggacggctctgggaatggcggtcagtcgccgccacagttggaggccgggatggacgtg gcggccgtggagcagcaggtggagctgctgctggaggactggaacaggagcgcagacatg ctcttcagcatccaccccaccgacggctcgctgctcgtgtggcacaccgactggctagac gagtaccagcccgggatgttccgccaggctcaggtgtcatttgtgtcccgcatccccgtg gcgttcccgacgggcgacgccaactcgctgagccgcagcgtggtcatgtacgcctgcaac aagaacgtggacctggccatccagcagggccgccagcagcagcagcagcgtccatccggc ggcggcctgccccgctcctcctccctcatctcctgcttcggccaccagggcaaggggtca gcgacgggctccggcagcctgcgcctcagcatcttcacgcccagcgtgctcatgatctcc aagcacgctgacggctcgctcaaccagtgggcggtcagcttcgccgaggactcggccttc tccacggtgctcagtgtgtcgcaccgctcgcgctactgcggccaccgcttccacctcaac cacctggcctgccactcgctgctgccactgctgctgaccacctcgcaccacaacgccctg cgctcgccgacccctgcggccgccggcccggtcaacgcgctctcctcctccccctcctcc accggacgccacagcaggggcttgctcggcgccgtgccgcaggaccccaacgccatctac agcgagctcatcctgtggcgcgtggagcccgtgggcccgctctccttctccggcggcgtg tccgagctggccagggtcaactctctccacgcctcggctttcgccaacgtggcctggctc cccacgctcatccccagcaactgcctgggcgagtatggcagctcccccagtgcctgtttt gtggcaaatgatggtcattctctgcgcttgtatcaagctgtcattgaagccaagaagtta cttagtgaagtctccaatccagaaaattctaaatctgtaggggaagcttttaacatcatc agtcagcagtccaccgcgcgcccaggctgcatcattgagctggacgtgatcacagacttt caggggaagcagactcaactgctgcacgtgttcgaggaggacctgatcttggggagccag aggcccgatggagaagcacaggaggcaccacctacagactcggcctgtggccagtctgtg ttctctgccaggtttttcttagtggtgatggaagccacacccaccgggcggtccctgctg cacatgtggctcctccagctctccgctgaaccggtctcctcaggtgaagcgtccactcct gctggcccagaccagagtggctctgggttgagctttgggcagctgtcctctcctggacag cctcagcggagcggagggagcccctgcggcctgcacggcgcctgccgtctggctctccac agcgtgcgcgtcttcagccaggagctggagctgcccgccggcgtggaggtcatcagagtc acacctgcggcaggtcacttgagctcctcatctcttcagcctgccggccgagcgccctac ctgctggccacctcctgctcggacgcccaggtgcgcttctggaggtgcggcctcgcgccc cagcccctggtggaaaatcagtcggagtacgtgtgggaggagtggcctctcttggtggag gagggctcagccaatagcagcgcgttcagcgtctccagcgaaccagtcgctgtctgctgc tgccacactagccgggtggtggtggcctaccgtgactccactggctctcagggggaccag ccgaaggactctccgctcctcgtgagcattttccagtgcgagtccacaggaggctcccag tgggtgctggagcagacgctccagctggacagtcccagcgaggctagctgggacagaagg ctgtccaccgggctggccaatggcaagcatggcggcggcgacgagtgcccgttcagcggc cggagtactgtccacctagactgggtgtccagagaggacggctcccacatcctcaccgtg ggcgtgggctccaggctgcacatgtacggccctctcctggtcaagccgcctgagctgggc ctctccgatgggggcagagacggggcgtgggatgcctcccggctggttctcctgcgggca gtggacctggtgtcgtcggtggagggctcgctgcccgtcccggtgtccctgtcctgggtg cgggacggcatcctggtggtgggcatggactgcgagatgcacgtttactcccagtggcag ccgcccgcccccgcccgctccgccagcgtgtccagggggactgactccggcagcgtcagc tctctactggccgccgccaagcaggacagccacacggcctcccctgtgacctccaggcag cccctgacgcgctccctgaccagcctggcgcagaagctgagcagcgccgggggaaagcgc ggtggaccggagctcccggcccagctggaggacagcggcctgttcgaggcggcccaccat ctgtcccccacgctgccccagtaccaccccgtccagctgctggagctcatggacctgggc cgcgtgcggcgcgccaaggccatcctctcacacctggtcaagtgtgtggccggcgagggg gtggtgctgaagggggaggagggctcggcctgcgcgagcggtcggcagcgctcccggacc ttcagcgcgggcggggggggcacctcgcgggacgccaagctgttccagcggcccgaggcc gcgtccgactacgccgagatcgagtccatcccgcctcttccgctctacgcgctgctggcc gccgaccacgactcctccggcggcgccacagaggagccggtcagcgcggggcccgacagc ggacgcggccccggcccccgcagcaacccgcccagcgcctacgagcagctcttccagtcc cccgggatgccctccagcgccgacgagccgcccgatccgttccaagacgacgacgaggat ggcgaaaaggccaaagtgatcgacctgtcgcagtacgggcccacggcgttcgggccggag cacgcccaagtgctgtccagctacctgctgcaggccagcctcccgggcctcacgcgcatg gagcagatgtccctcatggccctggccgacaccgtggcatccacacgcacagacatcgga gagagccaaggcaaggcccagggtggcgagacgctggacgactgtggcctgaggttcctg ctggcagtgcgtctgcacaccttcctgctgacctcgttgccccctgctcaccgcgcccag ctgctgcaccaggggctctccacgtgccactacgcctgggcgttccactcggaggccgag gaggagctgctgaacatgctgccggtgctgcagaagggtgaccccgcgtggacagagctc cgggccatgggcctgggctggtggctccgcagcaccccccgcctccgccgctgcatagag aaggtggccaaagcaacgttccagaggaacaacgaccccctggacgcagcactcttttat ctcgccatgaagaagaaggctgtggtgtggggcctctacaggtcccagaagaacgccaag atgacggagttcttcagccacaacttcactgaggaccggtggagaaaagcagcactgaag aatgccttctccttgttagggaaacaacgcttccagcactctgctgccttcttcctcctc gcaggctccctcaaggatgctgtggaggtgtgcatagagaagctccaggacctgcagctg gcgctggtcatcacgcgcctctatgagtccgagtttgagatctcctctacgtacaagcgc atactgcagaggcacgtgctgggtcaggaccctcatatgcccccccactccgaccccttc ctgcgcagcatggcctgctgggtactcgaccactacagccgtgccttggacacactcctg gagcctcctgcgtcagcagtggaccaatcaggttccagtgagcacaaggcacagcaagga ccagttgccatgtctccatgtaacccacaagtgttcaacttctacacctacctgcgcact catcccctgttgctgcggcgacacctgggctcgcaggagaggcggggcaggctgacggcc gagggccgagaggaagactcggtcacgctggtggagcgccgcctcttcttcaccgctgcc tacgctcacctgcaggcgggctgcccactgctggccctggaggtgctgtcccgcctgccc agcgccatcaagaccagcagcccccctgggccggacagccctagccacgagctgtccgcc gatcagagcagcaacgccaccgagcccgactggtcgcagcccctcttcaacggcttcggc tcggcctgcgattcgccgtcctcgttcaatccgagccgctccgactcagcgctgagcttg gactggagccagccgtcagccagcatggtggacgagcccctggacctgaagtgggacagc gacaaagatgaggacgacgaagaggaggaagaggaaggtgagacaaagcaggcagaggtg gatgaagctccggtgtcgtccagcacaagggccttccccgacccgtcggctgcctccagt ccggcacaggctccctccgaggccgtgtccagccccgctcccaaggcactggctggcgac gacatccaggcggcgcagctgaagttccgcgcctgcctgaagctgctgacgtccgagctg cgcacgctggcctccggctgccctctggacggcgggcgcctccgtcagcagctggccgtg tggctgcagcgcgaggtggaggccctggagtgctgctgcggctacagcccctgccccccc accccgcagggctcgcagctggccggggacagccacctctgcctctcccctgtggccgag gccttgtccgggggcgcggcagcgggccgggtcggggccggatccggggctgaggctgtg gccgcccagggcaggaggcagtggctgcagaggaaccagcagctgctgcgcatcttcctg agctactgcagcctccacggctcccacgggggaggactggcctccgtccacatggagctc atcctgctgctgcaggagtcccagcaggatgacagcatgtgttcagcggtgattagccct ccgcctcctgccaccattccgctgctcctgtcctgcatgggcggctcccggaccgtagtg gccaaccctgtgtcccacctgaccagcatcactcatgacatcctgcgcaccatcaatgcc ctagactccccaccgcaccccgactccgtcagcagcaagatctatgtgatgcatgccttg gcttcctcgctgtctgcctgtatctaccagtgtctgtgcgatggacacccgtacagtcag gtgaatggcatcatgggaccggtgtaccagagtgcgctgcattctcagcatccaccaggc cgcggcctcagcacagaggagaccgttctgcccaatacccccccagcacagtggccaggt gtggcggcgctggtgcgtctgctgagcgcgtgcggaggggaggagggccgcgctggcctg ggcgtgctgctgtgcgaggtgctgacggccgtcttcctcagcctgttcgtgcacggcctg gccacccactccagcgcccagctcttccgcgtgctggcgcaccccctcaacagcaagctg tgggtcgccgtgttcgggggaggggcgcgtctgcccaccgtcaccaaggacgcccccaca gtggccgccgtcgcccatgaggagtcggacaggaagcagaagcgtttccggctgcgctcg tcccgcagtagctccagggaggctccggccgagagcccgcccagcccacccaccccgccc tccgagccccgcccctccagcgtcacggagcgcttcgtccagcccgagctcagcatctgg gattacttcatcgctaagccgttcctgctcccctccgacaccaggcttgtgtatgactct gaggagagcctcggcagtgaggatgaggaggatgaagatgagtacacggacgccttcgac tccagctcccctctgcgagaacattccaaccacaactcctacagctggtgtctgatgcgt ctggccatggttcagatggtcctgtccagcctgaggtccttctaccccatggcaggccac gacctcatggacctccctgtaggttctcctctgtgccatgctgtgctcaagaccctgcaa cgctgggaacaggtgctcctcaagaggctggagatctttggaggcccccctcccaaatac atctccacccacccccaggacgacagctgcgcccctgggccagctctgctccgccacaag gctctgtatgaagcctccaacacccctttcaggtcccagcagcacgctgcgctgcccgtg cggcgcctgtggcagtacctggtcaagcaggaggaggtgcaggaaaccttcatccgcaac atcttcaccaagaagcgggaccagaacgagtcgttggaagacagcagggattatgggaaa tgttcaggcgtggacgagcctaacctcaaccagattgaggcggatctgggatacccgggt ggaaaggcccgcatcattcacaaggagtccgacatcattacagcgtttgccatcaataag gcgaaccgtaactgcctggtcatcgcctccacgcatgacatccaggagctggacgtgtcg tccatcctggccacacagatcctaacgtggatcgacgacgaagcagaagtggaggccaaa gggggtgatgagtttctggtggtgcacgcacgagatgacttcaccaccctccatggcacc accccctacacacacagcagccccggcacacccatcaacctgccctggctgggcagcatg cagactggccgaggggcctccgtgctcatcaagaggaacatcaacaacgtgaggaggatg gcctcccacccaacactcccctactacctcactggggctcaggacggcagtgtgagaatg tttgaatggggtcactcacaacagatcatctgcttcaggagccctggcaactcgagagtg acacgaatccgtttcaactaccagggaaacaagtttggcattgtggatgcagacggagcc ttgagcttgtggcagaccaacacaacagggaacacccccaaaccttttatgactttgcag tgccataataagactgctcatgacttcgtcttcgtgggctcatcctcactcatcgccaca gcagggttctccacagacaacaggaacgtgtgtttgtgggacacgctggttacaccagca aacagtttagtccatgccttctgctgtcacgagaccggcgcgacagtgctggccatggcc cctaagcagcagttgctgttggctggcggccggcggggctggatcagtgtgctggacctc actcagcggcagcagcggcagagcttccaggcccacgactcgcccgtcaaagcgctggcg gtggagcccagcgagggctgcttcatcagcggctcggccgagggcaacatcaaggtgtgg agtttgctgacgcagaccctgctccactcctttcccaacgagcatgcgcgccagtctctc ttccgcaacctgggcaccggcgtcatgcaggtggaggctgcgccctccaaccaggtgttc tcctgcggcgccgacggcaccatgaagctgcgcgtcctccccgaccgcctcagcgtgcag gccagtcgagccaggaacaacgtcaagttcatcatctag

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