Alosa sapidissima (American shad): 121716100
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Entry
121716100 CDS
T11137
Symbol
prdm12b
Name
(RefSeq) PR domain zinc finger protein 12b
KO
K24255
PR domain zinc finger protein 12 [EC:2.1.1.-]
Organism
asad Alosa sapidissima (American shad)
Brite
KEGG Orthology (KO) [BR:
asad00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
asad03036
]
121716100 (prdm12b)
Chromosome and associated proteins [BR:
asad03036
]
Eukaryotic type
Histone modification proteins
HMTs (histone methyltransferases)
HKMTs (histone lysine methyltransferases)
121716100 (prdm12b)
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Paralog
Gene cluster
GFIT
Motif
Pfam:
PRDM2_PR
zf-H2C2_2
zf-C2H2
zf-C2H2_4
SET
zf-met
zf-C2H2_2
zf-C2H2_jaz
zf-C2H2_7th_ZNF462
zf-C2H2_6
CBM_3
zf-Di19
zf-C2H2_15
Zn_ribbon_Elf1
Motif
Other DBs
NCBI-GeneID:
121716100
NCBI-ProteinID:
XP_041958230
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Position
8:37746895..37753403
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AA seq
382 aa
AA seq
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MGSVLPAEALVLKSGFKPPTFSLSEIITSDILHSFLYGRWRNVLGENLLEDKSSPVCPKT
AFTAEVLAQSFSGEVQKLSSLVLPSEVIIAQSSIPGEGLGIFSKSWIKAGTEMGPFTGRL
ISPEHVDLFKNNNLMWEVFNEDGTVRYFIDASQEDQRSWMTYIKCARNEQEQNLEVVQIG
SSIFYKAVETIPPDQELLVWYGNTHNTFLGIPGVLAMEEEPQKKHKNDDPSLCDSSSSST
LASASRMRCVICHRGFNSRSNLRSHMRIHTLDKPFVCRFCNRRFSQSSTLRNHVRLHTGE
RPYKCHVCQSAYSQLAGLRAHQKSARHRPAGGSSASVGVVSGAVVVGLQTHSPPPPQMAP
VPHTHTHTHPASLVHHIPTMVL
NT seq
1149 nt
NT seq
+upstream
nt +downstream
nt
atgggttctgtgttgcctgccgaagccttagtgttaaagtcgggatttaagcctccgacc
ttctccctctcagagatcatcacgtccgacatcctccacagcttcctgtacggccgttgg
agaaacgtgctgggcgaaaacctgctcgaggacaagagcagccctgtgtgccccaaaacc
gccttcaccgccgaggtgctcgcgcagtctttctccggagaggtgcagaagctgtccagc
ctggtgctgccgagcgaggtgatcatcgcccagagctccatcccaggggagggactgggc
atcttctccaagagctggatcaaggccggcactgagatggggccgttcaccggccgcctc
atctctcccgaacacgtggacctcttcaagaacaacaacctcatgtgggaggtgtttaac
gaggacggcaccgtgcgctacttcatcgacgccagccaggaggaccaacggagctggatg
acctacatcaagtgcgcccgcaacgagcaggagcagaacctggaggtggtgcagatcggc
agcagcatcttctacaaggccgtggagacgatacctcctgaccaggagctgctggtgtgg
tacggcaacacccacaacaccttcctgggcatccccggcgtgctggccatggaggaggag
ccgcagaagaaacacaaaaacgatgacccgtccctgtgcgacagctcgtcctcctcgaca
ctggcctccgctagccgcatgcgctgcgtgatctgccaccgcggcttcaactcgcgcagc
aacctgcgctcgcacatgcgcatccacacgctggacaagcccttcgtctgccgcttctgc
aaccgccgcttcagccagtcgtccactctccgcaaccacgtccgtcttcacacgggcgag
cgcccctacaagtgccatgtgtgccagagcgcctactcgcagctggccggcctgcgcgcc
caccagaagagcgcccgccaccggccagcagggggcagtagcgccagcgtgggcgtggtc
agcggggctgtggtggtggggctccagacgcactcccctccgccaccacaaatggcacca
gtgccacacacacacacacacacacacccagcctccctagtgcaccacatccccactatg
gtgctgtag
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