Alosa sapidissima (American shad): 121716168
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Entry
121716168 CDS
T11137
Symbol
rorb
Name
(RefSeq) nuclear receptor ROR-beta
KO
K08533
RAR-related orphan receptor beta
Organism
asad Alosa sapidissima (American shad)
Brite
KEGG Orthology (KO) [BR:
asad00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
asad03000
]
121716168 (rorb)
09183 Protein families: signaling and cellular processes
03310 Nuclear receptors [BR:
asad03310
]
121716168 (rorb)
Transcription factors [BR:
asad03000
]
Eukaryotic type
Zinc finger
Cys4 thyroid hormone receptor-like
121716168 (rorb)
Nuclear receptors [BR:
asad03310
]
1. Thyroid hormone like
1F. RAR-related orphan receptor
121716168 (rorb)
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Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-C4
Hormone_recep
Motif
Other DBs
NCBI-GeneID:
121716168
NCBI-ProteinID:
XP_041958348
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Position
8:complement(23598448..23628727)
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AA seq
551 aa
AA seq
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MLARLTAQLNRPTTVQTGTLLYVLFEAAYTLWNAFSQTSRSLTATPSKLFCRGSCFYNSL
CLFLHDCCVRERVGTTIMRAQIEVIPCKICGDKSSGIHYGVITCEGCKGFFRRSQQNNAA
YSCPRQRNCLIDRTNRNRCQHCRLQKCLALGMSRDAVKFGRMSKKQRDSLYAEVQKHQQR
LQEQRQQQTGEAEALARVYSSGLTNGLGALNHELAGAYANGHLIDMPKNGQNGIGGGVPN
GPAGGFYGMDSTQPSPDQSGLDMAGMKQIKQEPVYDLTPVPNLFSYGAYQDGQLTPGVSM
SELDRIAQNIIKSHLETCQYTAEELQQLAWQTHSYEEVKMYQSKTREALWQQCAIQITHA
IQYVVEFAKRITGFMELCQNDQILLLKSGCLEVVLVRMCRAFNPLNNTVLFEGKYGGMQI
FKALGCDDLVSAVFDFAKSLCSLQLTEEEIALFSAAVLISTDRPWLMEPRKVQKLQEKIY
FALQHIMQKNHMDEDALAKLIGRIPTLAALCTLHTEELQAFQQLHPETVNALFPPLYKEL
FNPDATAVLPK
NT seq
1656 nt
NT seq
+upstream
nt +downstream
nt
atgctcgcccgtctaaccgcacaactcaaccgtccgaccaccgttcagaccggcacgctg
ctatatgttctgtttgaagctgcctacacgctctggaatgctttttcgcagacatcaaga
tctctaacagccaccccatctaaacttttttgccgaggatcttgcttttataattcttta
tgtttgtttcttcatgactgctgcgttagggagcgcgtcggcaccactatcatgcgagcc
caaattgaagttataccatgcaaaatctgcggggacaagtcatcagggatccactatgga
gtcatcacatgtgaaggatgtaagggcttcttcaggagaagtcaacagaacaacgctgca
tactcctgcccgcggcagcgcaactgcctgatcgaccggaccaatcggaaccgatgccag
cactgtcggctgcagaagtgcctggcgctgggcatgtccagagacgcggtgaagtttggc
cgcatgtccaagaagcaacgcgacagtctgtacgcagaggtgcagaagcaccagcagcgt
ctgcaggagcagcggcagcagcagacgggtgaggctgaggcgctggcacgcgtctactcc
agcggcctcaccaacggcctgggggcgctaaaccacgagctggccggtgcctacgccaac
ggacacctcatcgacatgcccaagaatggccagaacggcattggcggtggcgtccccaac
gggccggccggcgggttctatggcatggactcgacccagccttcgccagaccagtcgggt
ctggacatggccggcatgaagcagatcaagcaggagcccgtctatgacctaacgcctgtg
cccaacctcttcagctacggggcctaccaggatggccagctcacgccgggagtctctatg
agcgagctcgatcgcattgctcagaacatcataaagtctcacttggagacttgccagtac
acggctgaggagctgcagcagctagcgtggcagacgcactcctacgaggaggtcaagatg
taccaaagcaagacgcgagaagccctgtggcagcagtgtgcgattcagatcacccacgcc
atccagtacgtggtagagtttgccaagcgcatcacaggcttcatggagctctgccagaac
gaccagatcctgctcctcaagtcagggtgtcttgaggtggtactggtccgaatgtgccgg
gcattcaaccctctcaacaacactgtgctgtttgaggggaagtatggcggcatgcagata
ttcaaagcactaggctgtgacgatttggtgagtgcagtctttgactttgccaagagcctg
tgttctctacaactgacagaggaggagatagcgctcttctcggcagccgtcctcatttcc
acagatcggccatggctgatggagcctaggaaggtccagaagctccaggagaagatctac
tttgctctgcagcacatcatgcagaagaaccacatggatgaggacgctcttgccaagctg
attggccgaatccccacgttggctgccctgtgcacgttgcacaccgaggagctgcaggcc
ttccagcagctccaccctgaaacggtcaatgcccttttccccccactctacaaggagctc
ttcaatcccgacgccactgccgtcctgcccaagtga
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