Alosa sapidissima (American shad): 121716643
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Entry
121716643 CDS
T11137
Symbol
npc1
Name
(RefSeq) NPC intracellular cholesterol transporter 1 isoform X1
KO
K12385
Niemann-Pick C1 protein
Organism
asad Alosa sapidissima (American shad)
Pathway
asad03265
Virion - Ebolavirus, Lyssavirus and Morbillivirus
asad04142
Lysosome
Brite
KEGG Orthology (KO) [BR:
asad00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03265 Virion - Ebolavirus, Lyssavirus and Morbillivirus
121716643 (npc1)
09140 Cellular Processes
09141 Transport and catabolism
04142 Lysosome
121716643 (npc1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
asad02000
]
121716643 (npc1)
Transporters [BR:
asad02000
]
Solute carrier family (SLC)
SLC65: NPC-type cholesterol transporter
121716643 (npc1)
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Other DBs
NCBI-GeneID:
121716643
NCBI-ProteinID:
XP_041958433
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Position
1:50209071..50232394
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AA seq
1283 aa
AA seq
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MGLSEEKHVIFFVLLVIIGTHQWVQVQAQAPHCVWYGECGDSLSVQEKKYNCEYNGPPMP
LNDTEGSQLLAELCPGFDYGDQALCCDVQQLRTLKGSLQVPLQFLSRCPACFQNLMNLFC
ELTCSPRQSDFLNATSFSPFQNKTNVVEVTYYISQTFANAMYNACRDVQAPSSNVKALSL
LCGKDASECTPTNWIEYMFDTNNGQTPFAIDSVFSDVPVKGMTPMNNHTFTCTDGLDDGS
GPCSCQDCSQACGPTPVPPPLPPPWTILGMDAMDVIVGISYATFILLFMGGVLGAWCYRK
RTIMSEYGPILDSNNPHSLNGDVGDSSSEASCCETLGERFEDALRRAFTSWGSYCVRRPL
PVVLCSLVLVSACSAGLCYMRITTDPVELWSSPGSTARQEKDYFDTHFGPFFRTEQVIIT
TPLEPPEPYSTFPAGDIVPFTAPLRKDVLHQVLDFQTAIENLEAPYGNETVTLKDICLSP
LAPYNSNCTILSVLNYYQNSHDVLDHEDTDGLWVYADYHSHFLYCVSAPASLNDTNKPHD
PCLGTYGGPVFPWLVLGGYDANNYNNATALVITFPVNNYHNDSVKLEKAWAWEKEFIRFV
QSYSNPNLTIAYNSESSIEREIERESNSDISTIVLSYAIMFIYISLALGHINSCRRLLVD
SKISLGIAGILIVLSSVACSLGIFSYAGVPLTLIVIEVIPFLVLAVGVDNIFILVQTYQR
DERMPQEELHQQIGRILGDVAPSMLLSSFSETVAFFLGALSSMPAVRTFSLFAGLAILID
FLLQISCFVSLLGLDVKRQESNRLDILCCVTLPEGQEERTDSFLFRFFKKVYAPFVLKEW
VRPLVVALFVGIFSFSIAAINKVEIGLDQTLSMPDDSYVLNYFGNLTEYLHTGPPVYFVV
EEGHDYRSTEGQNSVCGGVGCNNDSLVQQVYTASLISNYTKIGFTPSSWLDDYFDWVKPQ
SSCCRYYNSTGAFCNASVVEPQCVSCRPMTPSGKQRPTGEDFMKFLPMFLSDNPNVNCGK
GGHAAYGTAVDLLGHETVGATYFMTYHTILTSSPDFISAMKMARVLADNITRTMGLEGKG
YRVFPYSVFYVFYEQYLTIVYDTALNLCVSLAAIFVVSTVLLGLELWSAFLVSLTIAMIL
VNMFGVMWLWGISLNAVSLVNLVMCCGISVEFCSHIVRAFSISTKSTRVERAEEALAHMG
SSVFSGITLTKFGGILILALSKSQIFQVFYFRMYLAIVLLGATHGLLFLPVLLSYAGPSA
NKAKVMAAQKRVMGTERERLLNF
NT seq
3852 nt
NT seq
+upstream
nt +downstream
nt
atggggctctctgaggaaaagcacgttatattctttgtattactggttattatagggacg
catcagtgggtgcaggtgcaggcgcaggcgccgcactgtgtgtggtatggagagtgtggg
gactccctcagtgtccaagagaagaagtacaactgcgagtacaacggcccccccatgccc
ctaaatgacacagagggatctcagctgctggcggagttgtgtccaggttttgactacggg
gaccaggctctgtgctgtgatgttcagcagctgcggacgttaaagggcagcctgcaggtc
cctctgcagttcctgtccaggtgtccagcatgtttccaaaatctgatgaacctgttctgt
gagcttacgtgcagtccgagacagagtgacttccttaatgccaccagtttcagtcccttc
caaaacaaaaccaatgtggttgaggtcacttattacatcagccagaccttcgccaatgct
atgtacaatgcgtgtcgggatgtgcaggccccttccagcaacgtgaaggccctgtctctg
ctgtgtgggaaggacgcgagtgagtgcactcccaccaactggatcgagtacatgttcgac
accaacaacggacaaactccctttgccattgactcggttttctcagacgtccctgtaaag
ggcatgacccccatgaacaaccacaccttcacctgcaccgatggcctggacgacggctcg
gggccctgctcctgccaggactgcagccaggcctgcggccctacgcccgtgcccccaccg
ctgcccccgccctggaccatcctgggtatggacgccatggacgtcatcgtggggatctcc
tacgccaccttcatcctgctcttcatgggaggtgtgctgggagcctggtgctacaggaaa
aggaccattatgtctgagtatggccccatccttgacagcaacaatcctcattcactaaac
ggcgatgttggcgactcctcgtcggaggcgtcatgctgcgagacgctgggcgagcgcttc
gaggacgcgctgcgtcgggccttcacgagctggggttcatactgtgtccggaggccgctg
ccggtggttctgtgcagcctggtgctggtgtcggcctgctcggccggcctgtgctacatg
cgcatcaccaccgaccccgtggagctgtggtcgtcgcccggcagcacggcgcgccaggag
aaggactacttcgacacgcactttgggcccttcttccgcaccgagcaggtcatcatcacc
acaccgctggagccccctgaaccctactcaacgttcccagccggagacatcgtgccattc
acagcgccactgcgcaaggacgtgctgcaccaggtgcttgacttccagacagccatagag
aacctggaagccccctatggcaatgagacggtgaccctgaaggacatctgcctgtccccg
ctggctccctacaacagcaactgcaccatcctgagtgtgctcaactactaccagaacagc
cacgacgtgctggaccacgaggacacggacgggctctgggtctacgcagactaccacagc
cacttcctgtactgcgtcagtgccccagcctccttgaacgacaccaataagccccatgac
ccttgtctgggtacctatggggggcctgtgttcccctggctggtcctgggaggctatgac
gccaacaactacaacaacgccacagccctggtcattacattccctgtgaacaactaccac
aacgattctgtgaagctggagaaagcctgggcttgggagaaagagttcatccgcttcgtt
cagagctactccaaccccaacctgaccatcgcctacaactcggagagcagcattgagcgt
gagattgagcgcgagagcaacagcgacatcagcaccatcgtgctcagctacgccatcatg
ttcatctacatctcgctggccctgggccacattaacagctgccgacgcctgctggtggac
tccaagatctcgctgggcattgcaggcatcctgatcgtgctgagctcggtggcctgctca
ctgggcatcttcagctacgccggtgtgccgctcaccctcatcgtcatcgaggtcatccct
ttccttgtgctcgccgtcggagtggacaacatcttcatcctcgtgcagacctaccagagg
gacgagcgcatgccacaggaggagctgcaccagcagattggccgcatcctgggagacgtg
gcccccagcatgctcctctcctccttctccgagaccgtggccttcttcctgggggccctg
tccagcatgccagctgtgcgcacattctcgctgttcgccggcctggccatcctcatcgac
ttcctgctgcagatcagctgcttcgtcagtctgctgggcctggatgtcaagaggcaggag
agtaaccgactggacatcctgtgctgcgtcacactgccagagggtcaggaggagcggacc
gacagcttcctcttccgcttcttcaagaaggtctatgcccccttcgtcctcaaggagtgg
gtgcggcccctggtggtggctttgtttgtgggcatcttctccttcagcatagcagctatt
aataaagtggaaatcggattggaccagaccctgtccatgcctgacgactcctacgtgctg
aactactttgggaacctgacggagtacctgcacactgggccgcccgtgtactttgtggtg
gaagagggccacgactaccgcagcaccgagggtcagaacagcgtgtgtggtggcgtgggc
tgcaacaacgactccctggtccagcaggtgtacaccgcctccctcatcagcaactacaca
aagatcggcttcacaccctcctcctggctggacgactactttgactgggtgaagccgcag
tccagctgctgcaggtactacaactccacgggggccttctgcaacgcgtcagtggtggag
ccgcagtgtgtatcctgcaggccgatgacgccaagtggcaaacagagacccaccggtgag
gacttcatgaagttcctgcccatgttcctgtccgacaatcccaacgtcaactgtgggaaa
ggtggtcatgcggcctacggcacagcggtggacctgttaggacatgagacggtgggcgcc
acctacttcatgacgtaccacaccatcctgaccagctcgccagacttcatcagcgccatg
aagatggcccgcgtcctggccgacaacatcacccgcactatgggcctggagggcaagggc
taccgagtgttcccctacagtgtgttctacgtgttctacgagcagtacctcaccatcgtc
tatgacacagccctcaatctgtgcgtgtcgctggcggccatctttgtggtgtccactgtg
ctgctgggcctcgagctatggtcggccttcctggtgtccctcaccatcgccatgatcctg
gtcaacatgttcggggtcatgtggctgtggggcatcagcctgaacgccgtctccctggtc
aacctggtcatgtgctgtggcatctcggtggagttctgcagccatattgtgcgggcgttc
tccatcagcacaaagagtacgagagtggagcgggcagaagaggccctggcacatatgggc
agctcggtgttcagtggcatcacgctgaccaagtttgggggcatcctgatcctggccctg
tccaagtctcagatcttccaggtgttctacttccgcatgtacctggccatcgtgctgctg
ggtgccacccatggcctcctcttcctacctgtgctgctcagctacgcaggcccatctgcc
aataaagccaaggtcatggctgcacaaaaacgagtcatgggcacagaacgagagcgacta
cttaatttctaa
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