KEGG   Alosa sapidissima (American shad): 121718579
Entry
121718579         CDS       T11137                                 
Symbol
taf5l
Name
(RefSeq) TAF5-like RNA polymerase II p300/CBP-associated factor-associated factor 65 kDa subunit 5L
  KO
K03130  transcription initiation factor TFIID subunit 5
Organism
asad  Alosa sapidissima (American shad)
Pathway
asad03022  Basal transcription factors
Brite
KEGG Orthology (KO) [BR:asad00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    121718579 (taf5l)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:asad03021]
    121718579 (taf5l)
   03036 Chromosome and associated proteins [BR:asad03036]
    121718579 (taf5l)
Transcription machinery [BR:asad03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIID
     121718579 (taf5l)
   Coactivators
    SAGA/TFTC/STAGA complex
     121718579 (taf5l)
Chromosome and associated proteins [BR:asad03036]
 Eukaryotic type
  Histone modification proteins
   HAT complexes
    PCAF complex
     121718579 (taf5l)
    STAGA complex
     121718579 (taf5l)
    TFTC complex
     121718579 (taf5l)
    SAGA complex
     121718579 (taf5l)
    SLIK complex
     121718579 (taf5l)
SSDB
Motif
Pfam: WD40 WD40_Prp19 WD40_WDHD1_1st WD40_CDC20-Fz Beta-prop_CAF1B_HIR1 Beta-prop_EML_2 Beta-prop_TEP1_2nd TFIID_NTD2 EIF3I WD40_MABP1-WDR62_2nd Beta-prop_WDR90_POC16_2nd Beta-prop_WDR75_1st WDR55 Beta-prop_EML Beta-prop_TEP1_C WD40_MABP1-WDR62_1st Beta-prop_IFT122_1st Beta-prop_SCAP ANAPC4_WD40 NBCH_WD40 WDR90_beta-prop_4th Beta-prop_RIG_2nd Beta-prop_IFT140_1st Beta-prop_DCAF4 Beta-prop_HPS5 Beta-prop_EIPR1 Beta-prop_SPT8 Beta-prop_WDR19_1st Cytochrom_D1 WD40_like
Other DBs
NCBI-GeneID: 121718579
NCBI-ProteinID: XP_041959560
LinkDB
Position
9:complement(16794473..16801898)
AA seq 640 aa
MKRVRTEQIQYAVTQYLKRRQYVDSEGNLKIAKLSQTAEEMAANLNVQTESSCANIVSAA
PCQADPHQYETQFCRLRTFLLEAEVSWGQEVSRVLYPLFLFLHLDMARCGLRAAADGFYS
RFHGLFLQDAEQRATVELLKGVLTAQDVAAHPKLCALLEHKYVVHLSDAAYSYLLRYLQS
DDHGALCRVLSTHLQLEVTPTPRTHYQLYGNNAAANNTSASNTSGSTPDAAADGLEDAAG
RPVAAPQSEAALEALQESIRRVRDGPPSLTTVCFYAFRHTERQLNAAEVSADSRLLAAAF
DSSAVKLWSLRARKLKAGPHRADVSKVRLACDLLEEEADDEDASGSEMRTLRGHCGPVYR
AAFLTDGQSGRGGAPGPGQALLSCSEDATVRLWDLTSFTCAALYRGHAYPVWDVSASPCG
LYFASASADRTARLWTPSRAHPLRLYAGHLADVDCARFHPNSAYLATGSSDKTVRLWSAQ
QGSTVRLFTGHRGPVLALAFSPDGRYLASGGEDQRLRLWDLASGGLVKELRGHTDAVTGL
SFSPDSSLVASSSLDNSVRVWDIRNSHSGGGGSAASGGTGTGGGAGAGGAAVAAAAAAAD
GSSSELVGLYTGDTSSILNVQFMACNLLVVTGTAQEKQEL
NT seq 1923 nt   +upstreamnt  +downstreamnt
atgaagcgagtacggaccgaacagattcagtacgccgtgacacagtacctgaaaaggcgg
cagtatgtagactcggagggcaacttgaagattgccaagctctcgcaaaccgccgaggag
atggctgccaacctcaatgtccagaccgaatccagttgtgctaacatagtctcggccgcc
ccgtgccaggccgaccctcatcagtatgagacccagttctgcaggctgcgcaccttcctc
ctagaggcggaggtgtcatggggtcaggaggtgagccgggtgctctacccgctgttcctc
ttcctgcacctggacatggcgcgctgtggtctccgggcggcggccgacggcttctacagc
cgcttccacggcctcttcctgcaggacgccgagcagagggccactgtggagctgctcaag
ggcgtgctgaccgcgcaggacgtggcggcccaccccaagctgtgcgctctcctggagcac
aagtacgtggtgcacctgtcggacgcggcctacagctacctgctgcgctacctgcagagc
gacgaccacggcgccctgtgccgcgtgctcagcacccacctacagctggaggtcacgccc
acgccacgcacacactaccagctctacggcaacaacgccgccgccaacaacacctctgca
tccaacacctcaggctccacaccggacgcggctgctgatgggctggaggacgccgcagga
cgtccggtggcggcgcctcagagcgaggcggcgctcgaggcgctccaggagtcgatccgg
cgcgtgcgggacggtccaccctcgctgaccactgtctgcttctacgccttccgccacacg
gagcggcagctcaacgccgccgaggtgtcggccgacagccgcctgctggccgccgccttt
gacagctccgctgtcaagctgtggagcctccgcgcgcgcaagctcaaggccggaccgcac
cgtgccgacgtcagcaaggtccggctcgcctgcgacctgctggaggaggaggcagatgat
gaggacgcatcgggcagcgagatgcggacgctacgcggacactgcgggccggtctaccgc
gctgccttcctgacggacgggcagtccggccgcggtggcgctccgggccctggccaggcg
ctgctctcgtgctcggaggacgccaccgtgcgcctgtgggacctgaccagcttcacgtgc
gccgcgctctaccgcggccacgcctaccctgtgtgggacgtgtcggccagcccgtgcggc
ctctacttcgccagcgcctcggccgaccgcacggcgcgcctctggacgccgtcgcgcgcc
cacccgctgcggctgtacgcgggtcacctcgccgacgtggactgcgcgcgcttccacccc
aactcggcctacctggccacgggctcgtccgacaagacggtgcggctctggagcgcccag
caggggtcgacggtccgcctcttcacggggcaccgcgggcccgtgctggcgctggccttc
tcgccggacggccgctacctggcgtcgggcggcgaggaccagcggctccggctgtgggac
ctggcgtcgggcggcctggtcaaagagctgcgcgggcacacggacgccgtcacaggcctc
tccttcagcccagactccagcctggtggcctcgtcgtcgctggacaactcggtgcgcgtg
tgggacatccggaacagccacagcggcggaggaggtagcgcagcgtctgggggcacgggg
acaggtggaggtgcgggggctggcggggcggcggtggccgcagcagcagcagcagcggac
ggctcgagcagcgagctagtgggcctctacacgggcgacaccagcagcatcctcaacgtc
cagttcatggcctgcaacctgctggtggtgacgggcacggctcaggagaaacaggagctc
tag

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