Alosa sapidissima (American shad): 121718585
Help
Entry
121718585 CDS
T11137
Symbol
spast
Name
(RefSeq) spastin isoform X1
KO
K13254
spastin [EC:
5.6.1.1
]
Organism
asad Alosa sapidissima (American shad)
Brite
KEGG Orthology (KO) [BR:
asad00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
asad04131
]
121718585 (spast)
09183 Protein families: signaling and cellular processes
04812 Cytoskeleton proteins [BR:
asad04812
]
121718585 (spast)
Enzymes [BR:
asad01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.1 Enzymes altering polypeptide conformation or assembly
5.6.1.1 microtubule-severing ATPase
121718585 (spast)
Membrane trafficking [BR:
asad04131
]
Endoplasmic reticulum (ER) - Golgi transport
Others
Others
121718585 (spast)
Cytoskeleton proteins [BR:
asad04812
]
Eukaryotic cytoskeleton proteins
Microtubules
Tubulin-binding proteins
Microtubule severing proteins
121718585 (spast)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA
AAA_lid_3
Vps4_C
RuvB_N
AAA_22
TIP49
MIT
AAA_5
Mg_chelatase
AAA_14
AAA_16
DUF815
IstB_IS21
nSTAND3
AAA_2
AAA_24
NPHP3_N
Motif
Other DBs
NCBI-GeneID:
121718585
NCBI-ProteinID:
XP_041959570
LinkDB
All DBs
Position
9:complement(17998573..18019598)
Genome browser
AA seq
593 aa
AA seq
DB search
MSSTGGRGRKKKGIAETGPSPDGDTCMQVPPHKRNLNYFSVPVLAFFTFIRILTLNFGGL
FVRLFKRIPRAMATRPKRLEDQSCKEHDDIGEQIRNQHKQAFEYISVALKIDEDDKGHKE
QAVQWYKKGITELEKGIAIEVTGNGEKVEKARRLQAKMNSNLLMAKERLELLATLRSGPS
QGDLYTDNLNQPYPNGHIHSVTGAVPKKREPVSQPSSHVQPQPRPKAQPKSQPSGGGFSG
AQRAHNTSGSNARPASHTASNHRGAAGKSGNRGNGKQATPTSTPARKRDMKNFKNVDSKL
ANLIINEIVDSGSSVKFDDVAGQELAKQALQEIVILPALRPELFTGLRAPARGLLLFGPP
GNGKTMLAKAVAMESNATFFNISAASLTSKYVGEGEKLVRALFAVSRELQPSIIFIDEID
SLLCERREGEHDASRRLKTEFLIEFDGVQSAGDDRVLVMGATNRPQELDEAVLRRFAKRI
YVALPTEETRLKLLKNLLGKHGNPLNHKELSQLARLTDGYSGSDLTSLAKDAALGPIREL
RPEQVRNMSANEMRNIRFSDFLESLKKIKRSVSPHTLEQYVRWNQEYGDTTAV
NT seq
1782 nt
NT seq
+upstream
nt +downstream
nt
atgagttctacaggaggaagaggcagaaagaaaaagggaatagccgaaacggggccctcg
cccgacggcgacacctgcatgcaggtgccgcctcataagcggaatctgaactacttttca
gtgccagtgctggcgttttttacttttataagaatcttgactttaaatttcggtggactc
ttcgtccggcttttcaaacggataccccgtgctatggcgacaagaccgaaacggctcgag
gatcagagttgcaaggagcacgatgacatcggcgagcaaattcgaaatcagcataaacaa
gctttcgagtacatctcagtagcgctcaaaatcgacgaagatgataaagggcataaggag
caggctgtccagtggtacaagaagggcatcactgaactcgagaaggggatcgccatcgag
gtgacaggaaatggggaaaaggtggagaaagcgcgtcgtctccaggccaaaatgaacagc
aacctcctcatggccaaggagcgcctggagcttttggccacgctgcgctcagggccctct
cagggagacctgtacactgacaatctgaaccagccctaccccaacggccatatacactca
gtcacgggggccgtccccaagaagagggagccggtgtcccagcccagcagccacgtgcag
ccccagccccggcccaaagcccagcccaagagccagcccagcggtgggggcttctctgga
gcccagcgggcccacaacaccagcggctccaacgcacgaccagcctcccacactgccagc
aaccatcggggggccgcggggaaatcaggtaaccgtggaaacgggaagcaggccacgccc
acgtcgacaccagcgaggaagcgagatatgaaaaacttcaagaacgtggacagcaagctg
gccaacctcatcatcaacgagatcgtggacagtggctcctctgtgaagtttgacgacgtc
gccggacaggagctggccaagcaggccctgcaggagatagtcatcctccccgcgctacgg
ccagagttgtttaccggtctcagggcgccagctagaggccttctcctctttggacctcct
ggcaacggcaagaccatgctggccaaagcagttgctatggaatcaaacgccacctttttc
aacatcagcgctgccagtcttacctcaaaatacgtaggggaaggggagaagttggtgaga
gccctgtttgctgtgtctagggagttacagccgtcgattatcttcattgatgagattgac
agcctgctgtgtgagaggagagagggggagcacgacgccagcaggcgcctcaagaccgag
ttcctcattgagtttgatggggtgcagtcggctggggatgatcgggtgttggtgatgggg
gcgactaatcggccacaggagctggatgaggctgttctcaggcgatttgcaaagcgcatc
tatgtggcgttaccaactgaagagacacgtctgaaactgctcaagaacctcctggggaaa
catggcaaccctctcaaccacaaggagctgtcccagctcgccagattgacagacggctac
tcagggagtgacctgacgtcactagctaaagacgctgctcttgggcccattcgagagcta
cgacctgaacaagtcagaaacatgtctgcaaatgagatgcgtaacatccgcttcagtgac
ttcctggagtccctgaagaagatcaagcgcagcgtgagcccccacaccctggagcagtat
gtgcgctggaaccaggagtacggggacaccactgccgtctga
DBGET
integrated database retrieval system
