Alosa sapidissima (American shad): 121718773
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Entry
121718773 CDS
T11137
Symbol
exosc1
Name
(RefSeq) exosome complex component CSL4
KO
K07573
exosome complex component CSL4
Organism
asad Alosa sapidissima (American shad)
Pathway
asad03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
asad00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
121718773 (exosc1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
asad03019
]
121718773 (exosc1)
Messenger RNA biogenesis [BR:
asad03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
121718773 (exosc1)
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
121718773 (exosc1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EXOSC1
ECR1_N
RRP4_S1
Motif
Other DBs
NCBI-GeneID:
121718773
NCBI-ProteinID:
XP_041959866
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Position
9:complement(2167357..2170256)
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AA seq
194 aa
AA seq
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MSPMKLCVPGERLCSTEDCIPGTGTYLRHGYIFASLAGYVLRKNEGEELPVISVVKETET
QLLPDVGAIVTCKVTSINPRFAKVHILYVGSTPLKDRFRGTIRKEDVRATEKDKVETYKC
FRPGDIVLAKVISLGDVQSNYLLTTAENELGVVVAHSEAGAQMVPVSWCEMQCPRTHAKE
FRKVARVQPEYLQA
NT seq
585 nt
NT seq
+upstream
nt +downstream
nt
atgtcgccgatgaagctgtgtgttccaggtgagaggctttgcagcacggaagattgcata
cctggaacgggcacgtaccttagacatggatatatcttcgcctctcttgcgggctacgtg
ctgagaaaaaacgaaggagaggagctacccgtaatctctgttgtaaaggagacagagacg
cagttattacccgatgttggcgctatagtaacctgcaaggtgaccagtatcaatcccagg
tttgctaaggttcacatcctctacgttggttccaccccactgaaggaccggttcagaggg
accataaggaaagaagatgtaagagcaacagaaaaagacaaggttgaaacctataaatgc
tttcgacctggtgatatcgtccttgcaaaagtgatctcccttggtgatgtgcagtccaat
tatctcttgacaacagcagaaaatgagctcggtgttgtggtggcccacagtgaagcaggt
gctcagatggtgcctgtcagctggtgtgagatgcagtgtccgcgcacccatgcaaaggag
ttccgcaaggtggcgcgggtgcagccggagtacctccaggcgtaa
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integrated database retrieval system