KEGG   Alosa sapidissima (American shad): 121718773
Entry
121718773         CDS       T11137                                 
Symbol
exosc1
Name
(RefSeq) exosome complex component CSL4
  KO
K07573  exosome complex component CSL4
Organism
asad  Alosa sapidissima (American shad)
Pathway
asad03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:asad00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    121718773 (exosc1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:asad03019]
    121718773 (exosc1)
Messenger RNA biogenesis [BR:asad03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Core exosome factors
     121718773 (exosc1)
 Prokaryotic type
  Archeal mRNA degradation factors
   Exosome components
    Core exosome
     121718773 (exosc1)
SSDB
Motif
Pfam: EXOSC1 ECR1_N RRP4_S1
Other DBs
NCBI-GeneID: 121718773
NCBI-ProteinID: XP_041959866
LinkDB
Position
9:complement(2167357..2170256)
AA seq 194 aa
MSPMKLCVPGERLCSTEDCIPGTGTYLRHGYIFASLAGYVLRKNEGEELPVISVVKETET
QLLPDVGAIVTCKVTSINPRFAKVHILYVGSTPLKDRFRGTIRKEDVRATEKDKVETYKC
FRPGDIVLAKVISLGDVQSNYLLTTAENELGVVVAHSEAGAQMVPVSWCEMQCPRTHAKE
FRKVARVQPEYLQA
NT seq 585 nt   +upstreamnt  +downstreamnt
atgtcgccgatgaagctgtgtgttccaggtgagaggctttgcagcacggaagattgcata
cctggaacgggcacgtaccttagacatggatatatcttcgcctctcttgcgggctacgtg
ctgagaaaaaacgaaggagaggagctacccgtaatctctgttgtaaaggagacagagacg
cagttattacccgatgttggcgctatagtaacctgcaaggtgaccagtatcaatcccagg
tttgctaaggttcacatcctctacgttggttccaccccactgaaggaccggttcagaggg
accataaggaaagaagatgtaagagcaacagaaaaagacaaggttgaaacctataaatgc
tttcgacctggtgatatcgtccttgcaaaagtgatctcccttggtgatgtgcagtccaat
tatctcttgacaacagcagaaaatgagctcggtgttgtggtggcccacagtgaagcaggt
gctcagatggtgcctgtcagctggtgtgagatgcagtgtccgcgcacccatgcaaaggag
ttccgcaaggtggcgcgggtgcagccggagtacctccaggcgtaa

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