Alosa sapidissima (American shad): 121719133
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Entry
121719133 CDS
T11137
Symbol
col17a1a
Name
(RefSeq) collagen, type XVII, alpha 1a isoform X1
KO
K07603
collagen type XVII alpha
Organism
asad Alosa sapidissima (American shad)
Pathway
asad04382
Cornified envelope formation
Brite
KEGG Orthology (KO) [BR:
asad00001
]
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
121719133 (col17a1a)
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Gene cluster
GFIT
Motif
Pfam:
Collagen
DUF7310
Motif
Other DBs
NCBI-GeneID:
121719133
NCBI-ProteinID:
XP_041960472
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All DBs
Position
9:12439243..12475853
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AA seq
1750 aa
AA seq
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MDNLTSTKIINTDGSLGGSAKVITETVTTSTRLTSLPPKGASSVQVVSSSSSSGRGGTAV
ERRVVTQSSGASYASSSLSSGLSIESEERFEGATGGGFTSTSTSTSTSTVSGSADLKGSK
GSTTTTTRIISTGVSSPFSFSSSSALPEGLGSGASSTSRYLSAAGEGGGGGVESAMSSGA
GGSSSVTVTKYSSSSTQGSALSASIGGGEGGESSSSTTVTKYSSSSGGSSSLSAGGGGGG
GGGGSSSTNVTKYSSSSEGSSSGGGGGSSSTTVTKYSSSSGGSSSLSAGGGGGGGGSSST
TVTKYTSSSGGSSSGGGEGGGSSSTTVTKYSTSSGSSSAMSSSGRGGGGGGEVTSSTRLT
KYSSSGGGSSSLTKYSSAVGSSLGVGGGSSVVAVTKYSASSMGMGGGVSGRKGSASSAAT
YSPPPVVKKTMLTARSESYEGSSSPNSSPEYTRKEYAAASAATRGRTHTRESEIRARLQS
ASPSARWTELDDVKRLLKGRSESISPPRSPTNTLPIPKKASVSDAQSAQYDSSTLDSTYM
SSGSYGYHTSAKNMSPIGTLQASTVSGLQNNMNLSAASMTAGLTAGSAVYGMQNNLSTTS
GGAITSNGLGAHTVYGVQKNVGTAGLSSAAVVPSSPAPSVDVFAKDFKFTLLEKENARAK
RETERLIMSKDSGKQFTTTTTTSGSYSEDSLKKEKMKVSSTTETTTAKADTSISITKAAT
KDKATYAEIRKDESGAGGALGFCSWWKWLLGMLLLSLLSLGLLCGLIALADDVRQLKARV
DALEGNVGGVSSASASRFQAGPSTVNIVDPLDLAYAERGGVVRADNTIQLGSSAQGQGSA
AVDPVSLQRTVQHLLRTELQSESVRAALASSMKGERGEPGPKGDSGHPGAKGEAGFPGMP
GPPGLLGHPGQEGPRGPKGSQGDAGADGLPGQRGREGPAGPRGEPGPPGVGEKGERGSAG
EPGAPGPAGPSGPAGPKGEAGGHGAPGLPGSPGPQGFRGDAGEPGPKGDKGPAGPPGNKG
EHGEKGPRGSAGEPGQPGPAGPSGEKGPKGSVGLPGADGQKGPRGEQGQSGLQGPRGPAG
PPGDTGAPGTPGLQGPPGLPGLSGKPGDKGEAGEPGKVINAAGFSSVAIPGPPGPAGSPG
PAGPPGLSGPIGPAGLPGQSGAKGEKGEKGEKGEKGEKGEKGEKGDGVAPGVSAKSTEKD
AENPEPAPGKPGPPGPPGPPGPPGEGKAGPPGPLGPAGPPGAAGAPGPPGHPGPKGEPGE
DGKQGYRGEPGQPGSPGPLGEPGLGVPGQPGPPGLPGSQGPEGSQGPEGPQGPEGPEGPQ
GPRGEAGIPGAPGIPGYSSNQGSPTPGPPGPPGPPGPPGAPAAASESVGQQITEYLQSDG
IRSYLAGPPGPPGPAGPPGYPGGSSASVDDIAAHVLSYVQRAGADGRPGPPGPPGPPGGA
SSPSINDIISIMQREEVRRILIGPPGPPGAADPQEVALRVLSMLNERGLVGRPGPPGPPG
PPGLPGYSYDISSLLQNSDYQGLQGPQGPVGPPGLPGPPGPPGPGGRDLENIRDYLTTVG
LKGSPGPPGPPGPQGPPGGVRQGLVSYASNENNNIQAEVQKYFKNHNLAGPPGPPGPAGP
KGESGDPGHPRSTRYRGAHTVDYPNVALRVTDYIKSHGMLRDDLEDRPQVIQGPPGPPGP
PGPPGSDHNVAEIMDYMKAHGGLVGSPGRPGLPGPKGEQGFPGLPGPQGPQGEKGDAASV
KHRRRRSTRA
NT seq
5253 nt
NT seq
+upstream
nt +downstream
nt
atggacaatttaacatcaactaagattatcaacacagacggaagcttgggagggtctgcc
aaagtcattactgagacagtaaccacttcaaccaggctgacatcattacctccaaagggc
gccagtagtgttcaggtggtctcctccagcagctcctcaggcagaggagggacagcggtg
gagaggagagtcgtcactcagagcagcggagccagctatgccagctcctccttgtccagt
ggtctctcaatagagagtgaggagaggttcgagggggccacaggtgggggtttcacctcc
acctccacctccacctccacctccacggtgagtggcagcgcagacttgaagggctcgaag
ggctccaccaccaccaccacccgaatcatctccacaggcgtctcttctccattctcattc
tcatcctcatcggccctgcctgaagggctcggctcaggagcaagcagcacctcccgttac
ctgtcagcggcaggtgaaggaggaggaggaggagttgagtcggcgatgtcttcaggagcc
ggagggtccagctcggtcaccgtcaccaagtacagcagctcgtccacccaggggtctgca
ttgtccgcgtccatcggcggtggagaaggaggagagagttcgagctccaccaccgtcacc
aaatacagctcctcttcaggaggttcttcatctttgagtgcaggaggaggaggaggagga
ggaggaggagggtctagttccaccaacgtcaccaaatacagctcctcttcggaaggatct
tcatcaggaggaggaggagggtctagttccaccaccgtcaccaaatacagctcctcttca
ggaggttcttcatctttgagtgcaggaggaggaggaggtggaggagggtctagttccacc
accgtcaccaaatacacctcctcttcgggaggttcttcatcaggaggaggagaaggagga
gggtccagttctaccaccgtcaccaagtacagcaccagctcaggttcttcatcagccatg
tcttcctccggaagaggaggaggaggaggaggagaggtgacatccagcaccaggctcacc
aagtacagctcgtccggcggagggtcgtccagcctcaccaagtacagctcggctgtcggg
agttccctgggggtcggaggagggtccagcgtcgtggcggtcaccaagtacagcgcctca
tccatgggcatgggcggaggggtcagtgggaggaaaggctcggcgtcctccgccgccaca
tactcaccaccccctgtggtgaagaagacgatgctcaccgcgcgctcggaaagctacgaa
ggaagttccagtccgaactcgtcccccgagtacacaaggaaagagtatgctgcagccagc
gcagccactagggggcgcacccacaccagagagagtgagatccgggcaagattgcagagt
gcttctccttcagcaagatggactgagctggatgatgtcaagaggctgctgaagggtcgc
tctgagagcatcagtcctccacgctcaccaacaaacaccctccccatccccaagaaggcc
agcgtctctgacgcacaatcagcccagtatgacagctctactctggactctacctacatg
tcctcggggagctacggctaccacaccagcgccaagaacatgagtcctatcggcaccctg
caagccagcacagtttctggcctgcagaacaacatgaacctgagtgctgcctccatgact
gctggactcacagctggcagtgcagtctatggaatgcagaacaacctgtccaccacctct
gggggcgctataacttcaaacggtctcggtgctcacacagtgtacggtgtccagaagaac
gttggaactgctggtctgtcctccgcagcagtggtgcccagtagtcccgcgccgagcgtc
gacgtcttcgccaaagacttcaagttcacgctgctggagaaggagaatgcgcgggccaag
agagagacggagcgactgatcatgtccaaggacagtggaaagcagttcaccaccacgacc
acaaccagcggctcatactctgaggactccctgaagaaggagaagatgaaggtgtccagc
acaactgaaaccaccacagccaaggcagacacaagcatttcaatcacaaaagcagcaact
aaggacaaggccacttatgcagagatccgtaaggatgagagtggggccgggggtgccctg
ggcttctgctcctggtggaagtggctgctggggatgctgctgctctccctcctgtccctg
ggcctgctgtgtggcctcatcgctctggcggacgatgtgcggcagctgaaggcccgcgtg
gacgcgctcgagggcaatgtgggcggcgtctcttcggccagcgccagccgcttccaggcc
ggcccgtccaccgtcaacatcgtcgacccgctggacttggcgtacgcagagcggggcggc
gtcgttcgcgctgacaacaccatccagctggggtcatccgctcagggccagggctcggcc
gcagtggacccggtcagcctacagcgcaccgtgcagcaccttctgagaaccgaactgcag
tccgagtctgtgcgagctgcactagcctcatcaatgaagggggagagaggagaacctgga
cctaaaggtgactctggacatcctggtgctaaaggagaggcagggttccctgggatgcca
ggtcctcctggtttgctgggacatcccggacaggaaggacccagaggtcccaagggatct
caaggtgatgccggtgctgacgggctgccaggccagaggggtcgtgagggaccagcgggg
ccccgtggggagccgggcccgccgggcgtcggagagaaaggagagagaggttccgcagga
gaacctggtgctccaggacctgctgggccatcaggaccagctggccccaaaggtgaggca
ggaggacatggcgcccccggtcttccaggtagtcctggtcctcagggtttccgtggagac
gctggagaacctgggccaaagggtgacaaagggccagcaggtccgcctggaaacaaaggt
gaacatggtgagaaaggtcctcggggttcagcaggagagcctggtcaacctggtccagca
ggaccatccggagagaaaggacctaaagggtctgtgggtcttcctggagcagatggccag
aaaggcccccgaggtgaacaaggacaaagtggtttacaaggacctagaggaccagcaggc
ccaccaggagatacaggagcaccaggaaccccaggcctacaaggacccccaggtctacca
ggactttcaggaaagcctggagacaaaggagaagccggtgaacctggtaaagtcattaat
gccgctggtttcagttctgtggctatccccgggccccccggtccagcagggtctcctggt
cctgccggtcctcctggcttgtcaggtcctatcggtcctgctggccttcctggtcaatct
ggagccaagggtgagaagggtgagaagggagaaaaaggagaaaaaggagaaaaaggagaa
aagggagagaaaggagatggtgttgcacctggagtttcagcgaagagcacagaaaaggat
gcagagaatcctgaacctgctcctgggaaaccaggtccccctggacctcctggaccccca
ggccctccaggtgagggtaaagccggtcctcccggacctcttggacctgctgggccacca
ggagcggcaggagctcctggtccacctggtcacccagggccaaagggagagccaggcgag
gatggcaaacaaggatacagaggagagccaggtcagccaggttcacctggtcccctagga
gagcccggtcttggcgttccagggcagcctggacctccaggactcccaggatcccaaggc
ccagagggctcacaaggcccagaaggaccccagggaccagagggtcctgaaggtccacaa
ggtccaagaggtgaagctggtattcctggtgcccctggaattccgggttattccagcaat
cagggatcacccactccaggaccaccaggacctcctggacccccaggacccccgggggct
cctgcagcagcctctgaatctgttggccagcagatcactgagtacctccagagtgatggt
atcaggagttatctggcgggtccccctggtcccccaggccctgctggtcctcctggatac
cctggaggctcttctgcctccgtggatgacattgctgcccacgtccttagctatgttcaa
agggcgggtgcagacggtcgccctggtcctccaggacctccaggacctcctggtggtgca
agcagtccgtccatcaacgacatcatttccattatgcagagagaagaggtgaggaggatt
ttgattggacctcctggaccgcccggagcagcagacccacaggaagtggctttgcgtgtc
ctcagcatgttgaatgagcgaggattggttgggaggccaggaccccccggtcctcctggt
cctccaggattgcctggatattcctatgacatctcctccctgttgcagaattctgactac
cagggccttcaaggaccccagggcccagtcgggcctcctggccttcctggccctcctgga
ccccctggaccagggggaagagacctggagaacattcgggactatctgaccacggttggt
ctgaaagggtcccctggccctcctggaccacctggccctcaggggccccccggaggggtg
agacaaggactggtgtcatacgcctccaacgagaacaacaacattcaggcagaggtccag
aagtacttcaaaaatcataacttggcaggacccccagggccgcctggtcctgcagggcca
aagggggagagtggcgatcccggacatccccgatccacgcgctaccgaggggcccacact
gtagactaccccaacgtggctctgagagtgacagactacatcaaatctcatggcatgctg
cgcgatgacttggaggatcgtcctcaggtcatccagggaccccctggacctccaggtccc
ccaggtccacccggttctgaccacaatgttgcagagatcatggactacatgaaggcacat
ggtggtctcgtcggatctcccggtagaccagggctccccggcccaaaaggtgaacaaggt
ttcccagggcttccaggacctcaaggaccacaaggggagaaaggtgacgctgcgtcagtg
aaacacagacgacgtcgaagcactagagcataa
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integrated database retrieval system
