KEGG   Alosa sapidissima (American shad): 121719141
Entry
121719141         CDS       T11137                                 
Symbol
taf5
Name
(RefSeq) transcription initiation factor TFIID subunit 5 isoform X1
  KO
K03130  transcription initiation factor TFIID subunit 5
Organism
asad  Alosa sapidissima (American shad)
Pathway
asad03022  Basal transcription factors
Brite
KEGG Orthology (KO) [BR:asad00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    121719141 (taf5)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:asad03021]
    121719141 (taf5)
   03036 Chromosome and associated proteins [BR:asad03036]
    121719141 (taf5)
Transcription machinery [BR:asad03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIID
     121719141 (taf5)
   Coactivators
    SAGA/TFTC/STAGA complex
     121719141 (taf5)
Chromosome and associated proteins [BR:asad03036]
 Eukaryotic type
  Histone modification proteins
   HAT complexes
    PCAF complex
     121719141 (taf5)
    STAGA complex
     121719141 (taf5)
    TFTC complex
     121719141 (taf5)
    SAGA complex
     121719141 (taf5)
    SLIK complex
     121719141 (taf5)
SSDB
Motif
Pfam: Beta-prop_WDR5 WD40_Prp19 WD40 Beta-prop_WDR3_1st Beta-prop_THOC3 TFIID_NTD2 Beta-prop_WDR3_2nd WD40_WDHD1_1st WD40_CDC20-Fz Beta-prop_CAF1B_HIR1 WD40_Gbeta Beta-prop_WDR36-Utp21_2nd Beta-prop_EML_2 Beta-prop_TEP1_2nd EIF3I WD40_MABP1-WDR62_2nd Beta-prop_WDR90_POC16_2nd Beta-prop_EML WDR55 Beta-prop_WDR36-Utp21_1st WD40_MABP1-WDR62_1st NBCH_WD40 ANAPC4_WD40 Beta-prop_IFT122_1st Beta-prop_Aladin Beta-prop_VPS8 Beta-prop_SCAP Beta-prop_WDR75_1st Beta-prop_TEP1_C Beta-prop_RIG_2nd Beta-prop_Vps41 Beta-prop_IFT140_1st WDR90_beta-prop_4th Beta-prop_WDR41 Beta-prop_EIPR1 Beta-prop_DCAF4 WD40_RFWD3 Beta-prop_SPT8 Beta-prop_HPS5 Beta-prop_DCAF12 Beta-prop_WDR19_1st Beta-prop_Nup120_160 WD_LRWD1 LisH_PAC1 Tricorn_2nd PEP5_VPS11_N Beta-prop_IP5PC_F VPS8_N Beta-prop_ACSF4 PROPPIN WDR54 RAB3GAP2_N LisH_TPL
Other DBs
NCBI-GeneID: 121719141
NCBI-ProteinID: XP_041960492
LinkDB
Position
9:12326027..12333120
AA seq 754 aa
MAAVQDGPIESESDTETKTDALNDGAGNITGGSTGALSSPPNAASSATGTTKSMAPPGPE
NQQTLLAVLQYLKKNNLLESVDILRREAGLSDDGEDSQGAEGSGGSDPAGKVGEGGDANS
LLNRVSIATAAPVGVAAPAPSKASGGEDQPDVNVVLSAYSQQGDPALYDTYYTGLKNFIE
SVLDCHRAELSQLFYPLFVHMYLELVYNSHEQEAKAFFDKFSGDQECYYQDDLRVLSSVS
KREHMRGNETLLDFRTSKFVLRISRDSYQLLKRHLQERQNNQIWNIIQEHLYIDIFDGMP
RAKSQIDAMSGALAGEARREANKGKVFYGLLKEPEIEVPLDDEDEEAENEEGKPKKKKPK
KDSMGSKSKKQDPNAPQQTRIPLPELKDSDKLDKIMNMKEATKRIRLSPDNLPSICFYSF
LNAYQGLTAVDFTDDSSLIAGGFADSTVRVWSVTPKKLRRVKSSADLNMIDKESDDVLER
IMDDKSASESKVMYGHSGPVYGISFSSDRNYLLSSSEDGTVRLWSLQTYTCLVGYKGHNY
PVWDTQFSPYGYYFISGGHDRVARLWATDHYQPLRIFAGHLADVTCTRFHPNSNYVATGS
ADRTVRMWDVLNGNCVRILTGHKGPIHSLAFSPNGKFLASGATDGRVLLWDIGHGLMIGE
LKGHTDTIYALRFSRDGEILASASMDNTVRLWNASKAFDDVETDDFTATTGHIHLPDNSQ
ELLLGTYMTKSTPVVHLHFTRRNLLLAAGAYNPQ
NT seq 2265 nt   +upstreamnt  +downstreamnt
atggcggctgtgcaagatgggccgattgagtcggagagtgatacagaaacaaagacagat
gcattgaacgatggcgctggaaatatcacgggtggttcgacgggagcgctgtcttcgccg
cccaatgcagcttcttcagccacaggcactacgaaatccatggcgccgcctggacccgag
aaccagcaaacattgctagccgtgctgcagtatctcaagaaaaacaatttattggaatcg
gtggatattttgcgtcgagaagcaggtttatcggacgatggggaagactcacagggcgct
gaaggatccggtggatcagatcctgcagggaaagttggcgaaggtggggatgcaaactcc
cttcttaaccgagtatcgatcgctaccgcagcccccgtaggcgttgctgccccggcgcca
tccaaagctagcggaggggaggaccagccagacgtaaatgttgtcctatcagcatacagt
cagcagggcgatccagccctttatgacacctattacaccggcctgaagaacttcatagaa
tcagtattggattgccaccgagccgagctctctcagcttttctacccacttttcgttcac
atgtacctggagctggtctacaacagccacgagcaggaggctaaagcattttttgacaag
ttcagcggtgaccaggagtgctactaccaggatgacctgcgcgtgctgtccagcgtcagc
aagcgcgagcacatgcgcggcaacgagacgctgctggacttccgcaccagcaagtttgtg
ctgcgcatctcgcgcgactcctaccagctgctcaagcgccacctgcaggagaggcagaac
aaccagatctggaacatcatccaggagcacctgtacattgacatcttcgacggcatgccg
cgcgccaagagccagatcgatgccatgtcaggagccctggctggggaggcccgcagggag
gccaacaagggcaaggtgttctacggcctccttaaagagccggagattgaggtacctttg
gacgacgaggatgaggaggctgagaacgaggaaggcaaacccaagaagaagaagcccaag
aaggatagtatgggctccaagagcaagaaacaggacccaaacgccccccagcagaccaga
atccctctcccggagctgaaagactcggacaagctggacaagatcatgaacatgaaggag
gccaccaaacgcattcgtctgagtccggacaacctcccctccatctgcttctactctttc
ctcaatgcctatcagggtttgaccgcagtggacttcacagatgactcaagtctcatagca
ggggggttcgcagactccactgtccgagtgtggagcgtcaccccgaaaaaactacggaga
gtcaagtcttcagctgacctgaatatgatcgataaagagtcggacgacgtgctggaacgc
ataatggatgataagtcggcaagcgaatccaaggtcatgtatggtcacagtggacctgtg
tatgggatcagcttcagttctgacaggaactacctgttgtccagctcggaggatggtacg
gtgcggctatggagtcttcagacctacacgtgtttagtcggctacaaaggacacaactac
cccgtttgggacacgcagttctctccttatggctactacttcatctcaggaggacatgac
agagtggctcggctgtgggccacggaccactaccagcctctgcgcatatttgcaggtcac
ctggctgacgtcacctgtacccgctttcaccccaactcaaactacgtggccacgggttcg
gctgaccgcaccgttcgcatgtgggatgtcctgaacggcaactgtgttcgcatcctcacc
ggacacaaggggcccattcacagcctggcgttctctccgaacgggaagttcctggcctcg
ggggccacagacggccgagtgctgctgtgggacatcggccacggcctgatgatcggggag
ctgaagggtcacaccgacaccatctatgccctcaggttcagccgcgatggggaaatcctc
gcctcagcttccatggacaacacagttcgcctgtggaacgcctcgaaggcgtttgatgac
gtggagacagacgacttcaccgcgaccacgggtcacatccacctgcccgacaactcccag
gagctcctgctgggcacctacatgaccaagtccacgcccgtcgtccacctacacttcacc
agacgcaacctcctcctcgccgcgggggcctataaccctcaatga

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