Alosa sapidissima (American shad): 121719141
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Entry
121719141 CDS
T11137
Symbol
taf5
Name
(RefSeq) transcription initiation factor TFIID subunit 5 isoform X1
KO
K03130
transcription initiation factor TFIID subunit 5
Organism
asad Alosa sapidissima (American shad)
Pathway
asad03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
asad00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
121719141 (taf5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
asad03021
]
121719141 (taf5)
03036 Chromosome and associated proteins [BR:
asad03036
]
121719141 (taf5)
Transcription machinery [BR:
asad03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
121719141 (taf5)
Coactivators
SAGA/TFTC/STAGA complex
121719141 (taf5)
Chromosome and associated proteins [BR:
asad03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
PCAF complex
121719141 (taf5)
STAGA complex
121719141 (taf5)
TFTC complex
121719141 (taf5)
SAGA complex
121719141 (taf5)
SLIK complex
121719141 (taf5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_Prp19
WD40
TFIID_NTD2
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_CAF1B_HIR1
Beta-prop_EML_2
Beta-prop_TEP1_2nd
EIF3I
WD40_MABP1-WDR62_2nd
Beta-prop_EML
Beta-prop_WDR90_POC16_2nd
WDR55
WD40_MABP1-WDR62_1st
NBCH_WD40
ANAPC4_WD40
Beta-prop_IFT122_1st
Beta-prop_SCAP
Beta-prop_WDR75_1st
Beta-prop_TEP1_C
Beta-prop_RIG_2nd
Beta-prop_IFT140_1st
WDR90_beta-prop_4th
Beta-prop_Vps41
Beta-prop_EIPR1
Beta-prop_DCAF4
WD40_RFWD3
Beta-prop_SPT8
Beta-prop_HPS5
Beta-prop_WDR19_1st
Beta-prop_DCAF12
Beta-prop_Nup120_160
WD_LRWD1
PEP5_VPS11_N
LisH_PAC1
Beta-prop_IP5PC_F
VPS8_N
PROPPIN
WDR54
RAB3GAP2_N
LisH_TPL
Motif
Other DBs
NCBI-GeneID:
121719141
NCBI-ProteinID:
XP_041960492
LinkDB
All DBs
Position
9:12326027..12333120
Genome browser
AA seq
754 aa
AA seq
DB search
MAAVQDGPIESESDTETKTDALNDGAGNITGGSTGALSSPPNAASSATGTTKSMAPPGPE
NQQTLLAVLQYLKKNNLLESVDILRREAGLSDDGEDSQGAEGSGGSDPAGKVGEGGDANS
LLNRVSIATAAPVGVAAPAPSKASGGEDQPDVNVVLSAYSQQGDPALYDTYYTGLKNFIE
SVLDCHRAELSQLFYPLFVHMYLELVYNSHEQEAKAFFDKFSGDQECYYQDDLRVLSSVS
KREHMRGNETLLDFRTSKFVLRISRDSYQLLKRHLQERQNNQIWNIIQEHLYIDIFDGMP
RAKSQIDAMSGALAGEARREANKGKVFYGLLKEPEIEVPLDDEDEEAENEEGKPKKKKPK
KDSMGSKSKKQDPNAPQQTRIPLPELKDSDKLDKIMNMKEATKRIRLSPDNLPSICFYSF
LNAYQGLTAVDFTDDSSLIAGGFADSTVRVWSVTPKKLRRVKSSADLNMIDKESDDVLER
IMDDKSASESKVMYGHSGPVYGISFSSDRNYLLSSSEDGTVRLWSLQTYTCLVGYKGHNY
PVWDTQFSPYGYYFISGGHDRVARLWATDHYQPLRIFAGHLADVTCTRFHPNSNYVATGS
ADRTVRMWDVLNGNCVRILTGHKGPIHSLAFSPNGKFLASGATDGRVLLWDIGHGLMIGE
LKGHTDTIYALRFSRDGEILASASMDNTVRLWNASKAFDDVETDDFTATTGHIHLPDNSQ
ELLLGTYMTKSTPVVHLHFTRRNLLLAAGAYNPQ
NT seq
2265 nt
NT seq
+upstream
nt +downstream
nt
atggcggctgtgcaagatgggccgattgagtcggagagtgatacagaaacaaagacagat
gcattgaacgatggcgctggaaatatcacgggtggttcgacgggagcgctgtcttcgccg
cccaatgcagcttcttcagccacaggcactacgaaatccatggcgccgcctggacccgag
aaccagcaaacattgctagccgtgctgcagtatctcaagaaaaacaatttattggaatcg
gtggatattttgcgtcgagaagcaggtttatcggacgatggggaagactcacagggcgct
gaaggatccggtggatcagatcctgcagggaaagttggcgaaggtggggatgcaaactcc
cttcttaaccgagtatcgatcgctaccgcagcccccgtaggcgttgctgccccggcgcca
tccaaagctagcggaggggaggaccagccagacgtaaatgttgtcctatcagcatacagt
cagcagggcgatccagccctttatgacacctattacaccggcctgaagaacttcatagaa
tcagtattggattgccaccgagccgagctctctcagcttttctacccacttttcgttcac
atgtacctggagctggtctacaacagccacgagcaggaggctaaagcattttttgacaag
ttcagcggtgaccaggagtgctactaccaggatgacctgcgcgtgctgtccagcgtcagc
aagcgcgagcacatgcgcggcaacgagacgctgctggacttccgcaccagcaagtttgtg
ctgcgcatctcgcgcgactcctaccagctgctcaagcgccacctgcaggagaggcagaac
aaccagatctggaacatcatccaggagcacctgtacattgacatcttcgacggcatgccg
cgcgccaagagccagatcgatgccatgtcaggagccctggctggggaggcccgcagggag
gccaacaagggcaaggtgttctacggcctccttaaagagccggagattgaggtacctttg
gacgacgaggatgaggaggctgagaacgaggaaggcaaacccaagaagaagaagcccaag
aaggatagtatgggctccaagagcaagaaacaggacccaaacgccccccagcagaccaga
atccctctcccggagctgaaagactcggacaagctggacaagatcatgaacatgaaggag
gccaccaaacgcattcgtctgagtccggacaacctcccctccatctgcttctactctttc
ctcaatgcctatcagggtttgaccgcagtggacttcacagatgactcaagtctcatagca
ggggggttcgcagactccactgtccgagtgtggagcgtcaccccgaaaaaactacggaga
gtcaagtcttcagctgacctgaatatgatcgataaagagtcggacgacgtgctggaacgc
ataatggatgataagtcggcaagcgaatccaaggtcatgtatggtcacagtggacctgtg
tatgggatcagcttcagttctgacaggaactacctgttgtccagctcggaggatggtacg
gtgcggctatggagtcttcagacctacacgtgtttagtcggctacaaaggacacaactac
cccgtttgggacacgcagttctctccttatggctactacttcatctcaggaggacatgac
agagtggctcggctgtgggccacggaccactaccagcctctgcgcatatttgcaggtcac
ctggctgacgtcacctgtacccgctttcaccccaactcaaactacgtggccacgggttcg
gctgaccgcaccgttcgcatgtgggatgtcctgaacggcaactgtgttcgcatcctcacc
ggacacaaggggcccattcacagcctggcgttctctccgaacgggaagttcctggcctcg
ggggccacagacggccgagtgctgctgtgggacatcggccacggcctgatgatcggggag
ctgaagggtcacaccgacaccatctatgccctcaggttcagccgcgatggggaaatcctc
gcctcagcttccatggacaacacagttcgcctgtggaacgcctcgaaggcgtttgatgac
gtggagacagacgacttcaccgcgaccacgggtcacatccacctgcccgacaactcccag
gagctcctgctgggcacctacatgaccaagtccacgcccgtcgtccacctacacttcacc
agacgcaacctcctcctcgccgcgggggcctataaccctcaatga
DBGET
integrated database retrieval system
