Alosa sapidissima (American shad): 121719408
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Entry
121719408 CDS
T11137
Symbol
fip1l1b
Name
(RefSeq) pre-mRNA 3'-end-processing factor FIP1 isoform X1
KO
K14405
pre-mRNA 3'-end-processing factor FIP1
Organism
asad Alosa sapidissima (American shad)
Pathway
asad03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
asad00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
121719408 (fip1l1b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
asad03019
]
121719408 (fip1l1b)
Messenger RNA biogenesis [BR:
asad03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
121719408 (fip1l1b)
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GFIT
Motif
Pfam:
Fip1
TSX
Motif
Other DBs
NCBI-GeneID:
121719408
NCBI-ProteinID:
XP_041960941
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Position
1:33215983..33224594
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AA seq
601 aa
AA seq
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MSAEEADKTTTDASAGDEEEEWLYGDESENKDNEEEEAKLTAAVSAAPPAPVTEEATGNG
VTSQKETPAEDEDSDSDSDDDDDDVRVTIGDIKTGPPQYTTYGATPVNLNIKTAGSRPYG
AASAKLKGVDLDAPGNINGVPVLEVDMESFEEKPWRKPGADLSDYFNYGFNEDTWKAYCE
KQKRLRMGLDVMNISSTTSKITVQQGRTGNTEKEVVNLTPHTIKPDFNSPTNIYNKPGIN
PTRISPPQWTGPANQDMSYYTKTSGTIDVIGGGTATISRVEGRRRHNQEGNNIQVISEHS
SSDAEPTPAKMPPFFPPGPLPPNIPPPPFLPPPPNVSTAPPLIPPPRIPITVPPPGFPPP
PGGPPPSLMPTMDNVGNLAAMFRLLRYRAGGKENRILIQAAMDSSFLSSGHPGGYDGRSV
PPYPFPGGGYPPPMPGAVAQWPTMMDNSKQWDYYPRREKEREKERERERPRERAHERERE
REREHSPSAMGYNRCTESAVGHMESSNDEERYRYREYPERAYERHRERASREKEERHRER
RHRDKEERAHKSSRSSSRRRHDSEEGDSHRRHKHKKSKRSKEGKEPSEERAGDQENQEAM
E
NT seq
1806 nt
NT seq
+upstream
nt +downstream
nt
atgtctgcggaggaggcggacaaaaccacgactgatgctagcgcgggtgacgaggaagaa
gaatggctatatggagatgagagtgaaaataaagacaatgaagaggaagaagccaaattg
acagcagctgtaagtgctgctccacctgcccctgtcacagaggaagccacaggcaatgga
gtgaccagtcagaaagaaacacctgctgaagatgaggacagtgacagtgacagtgatgat
gatgacgatgacgtccgagtcaccattggtgacattaagactggacctccacagtacacg
acctatggagccacaccagttaacctaaacataaagacggcgggtagcagaccctatggg
gcagcctctgccaagctgaagggggtggacctggatgcccctggcaacatcaatggcgtc
ccggtactggaggttgatatggagtcctttgaggagaaaccctggagaaaaccaggtgct
gacctttctgactactttaactatggcttcaacgaggatacttggaaagcctattgtgag
aaacagaagagacttcgtatgggattggatgttatgaacatttcctcaacgaccagcaaa
atcacagtgcagcagggacgaacaggaaacactgaaaaggaagtggtgaacctcactccc
cacaccatcaagccagatttcaattccccaacaaacatatacaacaaacctggaataaac
ccaaccaggatatcccctccccagtggacaggccctgccaatcaggacatgtcctattat
acgaaaacaagtggcacaattgatgtcattgggggagggactgcaaccattagtcgggtt
gagggacgacgacgccacaatcaagaagggaacaatatccaggtcatctcggaacactcc
tcctcggacgctgagccaacaccggccaagatgccccccttcttcccaccaggccccctt
cctcccaacatcccgcctcccccgttcctgccccctccgcccaacgtcagcaccgcccct
ccactcatcccgccgcccagaattcccatcactgttcctcctcctggtttccctcctccg
cctggtggccctcctccatccctcatgcccacaatggacaatgtagggaatttggctgcc
atgtttaggctgctacgttacagagccggtggcaaagagaacaggattctcatccaggca
gcaatggacagcagttttctaagcagtgggcatcctggtggttacgatggacgttcggtc
cctccttaccctttccctggaggtggctatccgcctcccatgcctggagcagttgctcaa
tggcccaccatgatggacaactccaaacagtgggactactacccccggcgcgagaaggag
cgtgaaaaggagagggaacgtgagcggccgagagagagagcccacgaaagggagagggag
cgggagcgagaacacagcccttcagccatgggttacaacaggtgcactgaaagcgccgtc
ggtcacatggagagtagcaatgacgaagaacggtatcggtaccgtgaataccctgagcgt
gcctacgagcgacaccgcgaacgagccagccgagagaaagaggagcgacacagagagagg
aggcaccgagacaaagaagagagggcacataagtcctccaggagcagtagcaggaggcgg
cacgacagtgaggaaggggacagccaccgccggcacaagcacaagaagtccaagcgcagc
aaagagggcaaggagcccagcgaggagcgagctggagaccaggagaaccaggaggccatg
gaataa
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