Alosa sapidissima (American shad): 121719788
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Entry
121719788 CDS
T11137
Symbol
rfx1b
Name
(RefSeq) MHC class II regulatory factor RFX1 isoform X1
KO
K09173
regulatory factor X 1/2/3
Organism
asad Alosa sapidissima (American shad)
Brite
KEGG Orthology (KO) [BR:
asad00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
asad03000
]
121719788 (rfx1b)
Transcription factors [BR:
asad03000
]
Eukaryotic type
Other basic domains
RF-X
121719788 (rfx1b)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BCD_RFX
RFX_DNA_binding
RFX1_trans_act
Motif
Other DBs
NCBI-GeneID:
121719788
NCBI-ProteinID:
XP_041961491
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Position
9:complement(1728477..1748215)
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AA seq
928 aa
AA seq
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MATPAYVEDLQQQPSQTQGGSVNVATASPATPQFLSEVQASPGSTAQVSVPTPQTVQATP
IISSNATQKSAILATTTQVSTSQTQYVTAELQSPGIQTSNGQSTPQYIVVTVTEGSLHSN
DSVSDSSPPPSVVQTSVPTQVVQQVQTAQLQVQASALQQSGELVTGRERHSGRWSREEAG
TAKRAWTPSGQAQQWLAAAAGDWAFHSAADPSRFPPFVPVPVSLSYPVSFPVSGSVLAME
GWEAERPVAVQTQTLPPVLLCESATALRVQQQIQQGSVPHVYSSQVQYVEGREANYSGTI
RSGSYPYSESSLYSQSTPTGSYYETTPSTGSQIVTNSSSGAGSGVTVVTAGSAGSSGGAG
AEGTGGGSGSYVIQGGYMLGGGSNSNQGYTHTTRASPATVEWLLDNYETAEGVSLPRCTL
YCHYLLHCQEAKLEPVNAASFGKLIRSVFMGLRTRRLGTRGNSKYHYYGLRIKAGSPLLR
LIEDQQHLAMRQQPFTHKQRIKPVQKVEGMTNGMSLGGQQQGGGLSDISAQVQQYQQFLD
ATRTLPEFPVVELQAKVLANGISVENIAAYQQLYREHCEAILDVMVNLQFPLVETLWKSF
WRFNESQTSEPSDAASVNEESEKRLPKSALVLLCKYEPVLNWSRDCDNILYQSLVEVLIP
DVLRPIPSALTQAIRNFGKSVESWLTSAMMNIPEEMVRIKVTCVGAFAQTLRRYTSLNHL
AQAARAVLQNTTQISQMLSDLNRVDFANVQEQASWVCRCEDGVVQRLEQDFKLTLQQQNS
LEQWAAWLDGVVSQVLKPYQSSPAFPKAAKQFLLKWSFYSSMVIRDLTLRSAASFGSFHL
IRLLYDEYMYYLIEHRVAQAKGETPIAVMGEFSTLSRSLSTLDPDKEEEEEEEDESDEEC
QELTSHHADTSLALEPPAKLARTDSSVL
NT seq
2787 nt
NT seq
+upstream
nt +downstream
nt
atggcgactccagcctatgtggaggacctccagcagcagccctctcaaacgcagggcggc
agcgtcaacgtggccacagcctcacctgccacaccacagttcctgtcagaggttcaggcg
tctccgggctctaccgcacaagtgtctgtgcccactcctcagacggttcaggccacaccc
ataatctcttcaaatgctacccagaagtcagccattttggccaccaccacacaagttagc
acctcacagacacagtacgtgacggcagagcttcagagcccgggcattcagaccagtaat
ggccagagcacgccacagtacattgtggtgactgtaactgagggctcccttcactcaaac
gactcggtgtcagactccagtccccctccctctgtggtgcagaccagtgtgcccacccag
gtagtgcagcaggtgcagacggcccagttgcaggtgcaggctagcgctctgcagcagagc
ggtgagctagtgacaggcagagagaggcactcaggcagatggagcagagaggaagcaggg
acagcaaagagagcatggacgccgagcgggcaggcgcagcagtggctggccgcagcggca
ggcgactgggctttccactcggccgctgacccctctcgtttcccgcccttcgtgcccgtc
cccgtgtcgctctcgtaccccgtgtccttccccgtgtccggctcggtgctggccatggag
ggctgggaagcagagcggccggtcgccgtgcagactcagactctgcccccggtgctgctg
tgcgagagcgccacggccctcagagtgcagcagcagatccagcagggctcagtgccgcat
gtgtactccagtcaggtgcagtatgtggagggcagagaggccaactacagcggcaccata
cgttcagggagttacccatactcagagagctctctgtactcccagagcacacccactggc
tcctactatgagacgacgccctccacgggctctcagatcgtgaccaatagcagcagtggg
gcgggctctggcgtcaccgtagtaaccgctgggagcgcgggcagctcaggtggggcagga
gccgaaggcaccggaggaggttcaggaagttacgtcatccagggcggctacatgctgggg
ggagggagcaacagcaaccagggctacacgcacaccacccgcgcctccccagccaccgtg
gagtggctgctggataactacgagacggctgagggggtgagtctgccgcgctgcacgctc
tactgccactacctgctgcactgccaggaggccaagctagagcccgtcaacgccgcctcc
tttggcaaactcatcagatctgtgttcatgggcctgaggacacggcgcctaggcacacga
gggaactcaaagtaccactattatgggctgcggatcaaggctggctcccctctgctccgc
ctgatagaagatcagcagcacctggccatgcggcagcagccctttacccacaaacaaagg
ataaagccggtgcagaaggtggaggggatgaccaatgggatgtctctgggtggccagcag
cagggtggtggtctgtccgacatcagtgcccaggtgcagcagtaccagcagtttctggat
gccacccggacgctcccggagttccccgtcgttgagctgcaggccaaagtgctggccaat
gggatctctgtggagaacatcgcagcctatcagcagctgtaccgtgagcactgcgaggcc
atcctggatgtgatggtgaacctgcagttccccctggtggagactctgtggaagagcttc
tggaggttcaacgagagccagaccagtgagcccagcgatgcagccagtgttaatgaggag
tctgagaagcgtctgcctaagtcagccctggtgctgctgtgtaaatatgagccggtgctg
aactggagccgagactgtgacaacatcctgtaccagagtctggtggaggtgctaatcccc
gatgtgctgcggcccatccccagtgccttaactcaagccatccgtaactttggcaaaagt
gtggagagctggctgaccagtgccatgatgaacatcccagaggaaatggtccgcatcaag
gtgacttgtgtaggcgcgttcgcccagacgctgcgcaggtacacctccctcaaccacctg
gcccaggcggcccgcgccgtcctgcagaacaccacgcagatcagccagatgctctccgac
ctcaaccgggtggacttcgctaacgtgcaggagcaggcctcgtgggtgtgccgctgtgag
gacggcgtggtgcagcggctggagcaggacttcaagctcacgctgcagcagcagaactca
ctggaacagtgggctgcctggctggacggcgtggtctcccaggtcctaaagccctaccag
tccagccccgcctttcctaaagctgccaagcagttcctgctgaagtggtctttctacagc
tccatggtgatccgagacctcaccctgcgcagcgcagcgagctttggctcattccacctg
atccgcctgctgtacgatgagtacatgtactatctgatcgagcacagggtggcccaggcc
aagggagagacccctatcgctgtcatgggagagttttcaactctgagccgcagtcttagc
acactggacccagataaagaggaagaggaggaggaggaagatgagagtgatgaagagtgt
caggagctcacttctcaccatgctgacacgagtctggctcttgagccgcctgccaaactg
gcccgcaccgattccagtgtgctctga
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