Alosa sapidissima (American shad): 121720487
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Entry
121720487 CDS
T11137
Symbol
rxrbb
Name
(RefSeq) retinoic acid receptor RXR-beta-B
KO
K08525
retinoid X receptor beta
Organism
asad Alosa sapidissima (American shad)
Pathway
asad03320
PPAR signaling pathway
asad04920
Adipocytokine signaling pathway
Brite
KEGG Orthology (KO) [BR:
asad00001
]
09150 Organismal Systems
09152 Endocrine system
04920 Adipocytokine signaling pathway
121720487 (rxrbb)
03320 PPAR signaling pathway
121720487 (rxrbb)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
asad03000
]
121720487 (rxrbb)
09183 Protein families: signaling and cellular processes
03310 Nuclear receptors [BR:
asad03310
]
121720487 (rxrbb)
Transcription factors [BR:
asad03000
]
Eukaryotic type
Zinc finger
Cys4 hepatocyte nuclear factor 4-like
121720487 (rxrbb)
Nuclear receptors [BR:
asad03310
]
2. Hepatocyte nuclear factor 4 like
2B. Retinoid X receptor (RXR)
121720487 (rxrbb)
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Motif
Pfam:
Hormone_recep
zf-C4
Nuc_recep-AF1
Motif
Other DBs
NCBI-GeneID:
121720487
NCBI-ProteinID:
XP_041962551
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Position
10:complement(5361302..5374365)
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AA seq
428 aa
AA seq
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MSSHPHTTAADSSPVSSLDSPLSVTSSSLGSPGGPATPSASCGPLSNPEINSSVSISGLH
AVSSSDDVKPPFGLKSLSGHSPGPMLSQKRMCVICGDRSSGKHYGVHSCEGCKGFFKRTV
RKDLSYTCRDNKDCVVDKRQRNRCQYCRYQKCLATGMKREAVQEERQRSREREGELEYSR
AVNEEMPVEQILEAEMAAERKTAHTDGSGTGSASDPVTNICHAADKQLYALVEWAKRIPH
FSELPLDDQVILLRAGWNELLIASFSHRSVGVKDGILLATDLHVSRETAHTAGVETIFDR
ESAHSAEVGAILDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDAKGLTSTSEVELLRE
RVYASLEAYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIETFLMEM
LEAPHRLP
NT seq
1287 nt
NT seq
+upstream
nt +downstream
nt
atgagctcccacccgcataccactgcggcagacagcagccctgtcagctccctggattct
cccctctctgttacaagttcatcacttggctcacctggtggcccagcaacaccttcagcg
agctgtggacccttaagtaaccctgagataaactcttcagtgtccatctcagggctgcat
gcagtaagcagctctgatgatgttaagcctccatttggcctaaagtctctgtcaggccac
agccctgggcctatgctatcccagaaacggatgtgtgtcatctgtggagaccgatcttca
ggcaaacactatggggtgcacagctgtgagggatgtaagggctttttcaagcgcactgtt
cgaaaggacctgagctacacctgccgggacaacaaggattgtgtggtggacaagcgtcag
cgcaaccgctgccagtactgccgctaccagaagtgcctggccacgggcatgaagagagaa
gctgtccaggaggagaggcagcgcagtagggagcgggagggggagctggagtacagccgc
gccgtcaacgaggagatgccggtagaacagattttagaggctgagatggcagccgaacgc
aagacggctcacaccgacggctcaggtaccggctcggccagcgatccggtcaccaacatc
tgccacgctgcagacaagcagctctacgctcttgtggagtgggccaagaggatcccccac
ttctccgagctccctctggatgaccaggtcatcctgctgcgtgcaggatggaatgagctt
ctgatagcttccttctctcatcgctctgttggggtgaaggatggtattctcttggctact
gatctgcatgtatccagagaaacagctcacactgcgggggtggagaccatctttgacagg
gagagtgcccacagtgcagaagtgggagccatacttgaccgtgtgctgacagagttagtc
agtaagatgcgagatatgcaaatggacaaaactgagcttggctgtctccgggcaatcgtc
ctctttaacccagatgctaaaggcctgaccagcacgagtgaggttgagctcctcagggag
agggtgtatgcatcactagaggcctactgcaagcagaagtaccctgagcaacagggcagg
tttgccaagctgctgctgcgactgcctgccctgcgctcaatcggcctgaagtgtctggag
cacctgttcttctttaagctcatcggggacacccctattgaaactttcctcatggagatg
ctggaggcccctcatcggctcccgtaa
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