Alosa sapidissima (American shad): 121720562
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Entry
121720562 CDS
T11137
Symbol
rorc
Name
(RefSeq) nuclear receptor ROR-alpha A isoform X1
KO
K08532
RAR-related orphan receptor alpha
Organism
asad Alosa sapidissima (American shad)
Brite
KEGG Orthology (KO) [BR:
asad00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
asad03000
]
121720562 (rorc)
09183 Protein families: signaling and cellular processes
03310 Nuclear receptors [BR:
asad03310
]
121720562 (rorc)
Transcription factors [BR:
asad03000
]
Eukaryotic type
Zinc finger
Cys4 thyroid hormone receptor-like
121720562 (rorc)
Nuclear receptors [BR:
asad03310
]
1. Thyroid hormone like
1F. RAR-related orphan receptor
121720562 (rorc)
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Gene cluster
GFIT
Motif
Pfam:
zf-C4
Hormone_recep
DUF4799
Motif
Other DBs
NCBI-GeneID:
121720562
NCBI-ProteinID:
XP_041962744
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Position
10:complement(36286841..36327732)
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AA seq
515 aa
AA seq
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MENDYPDSPEGYCNDAQIKSENPPKKTHLTQIEVIPCKICGDKSSGVHYGVITCEGCKGF
FRRSQQSSVSYSCSRQSNCPIDRASRTRCQSCRLKKCVAQGMSRDAVKFGRMSKRQRDSL
IAEVERHRQQQQQQQRRLQVCTAGVQALGPTYCPGKEPCGGSSHLLQPLPLAPYTFPMDP
ELQHCGPEVHPHLVCHPGELQAAGLHYRSVQRRADRNRLADSRVDSRQSSPNQGILRMPG
TDPDLHPYDPEDPYCHYPTSLLHIRIEELCDSIVRSHRETSQYPVEELQALRWKIFTREE
VQIYHSKTVDEMWQLCADKLSDAVQFVVEFAKRLPGFRQIRQDDQINLLKSGSMEVVLVR
MSRLFNTENSTVYFDGKFAGTEVFKTLMCGDLISAVFDFAHSMCALRLTEQQVAIFSALV
LINPDRPGLEDRGRVQRMRKDIELALSHILHREHQESLLHRLDEKVAMLKALCSLHIEKL
RWFQQLYPLTVHSSFPPLYKELFGSDAERPGVSPP
NT seq
1548 nt
NT seq
+upstream
nt +downstream
nt
atggaaaatgactatcctgattcgccggagggatattgcaacgacgcacaaatcaaatct
gagaacccacccaagaagactcatttgactcaaattgaggtgatcccctgtaagatctgt
ggagataagtcctcaggggttcactatggagtcatcacgtgtgagggatgtaagggcttt
ttccggcgcagccagcagtccagcgtgtcgtactcgtgctcacggcagagcaactgcccc
atcgaccgcgccagccgcacccgctgccagagctgccgcctcaagaaatgtgtggctcag
ggcatgagccgagatgctgtgaagttcggccgcatgtccaagcggcagcgggactctctg
atcgccgaggtggaacgacaccggcagcagcagcagcagcagcagaggcggctccaggtg
tgcacggccggtgtccaggctctgggccccacgtactgcccaggcaaagagccctgcgga
ggctcctctcacctgctccagcccctgcccttggcgccctacaccttccccatggaccct
gagctgcagcactgtggcccggaggtgcacccgcacctggtgtgtcatccaggcgagctc
caggctgcgggcctgcactaccggagcgtccagaggagggcggaccgtaacagactggca
gacagcagggttgactcaaggcagtcctctcccaaccagggcattctgcggatgcctggg
actgacccggacttgcacccctatgatccagaggacccctactgccactaccctacctcc
ctgctgcacatacgcatcgaggagctgtgtgacagcatcgtgcgttctcaccgagagacc
tctcagtaccctgtggaggagctgcaggctctgcggtggaagatcttcaccagagaggag
gtccagatataccacagcaagacggtggatgagatgtggcaactgtgtgccgataaactg
agtgacgccgtgcagttcgtagtcgagtttgccaaaaggttgccagggtttcgtcagatt
cgtcaggacgaccagatcaatctgcttaagagtggctcaatggaggtagttcttgtcagg
atgagcaggctgttcaacacagagaacagcactgtttattttgatggaaaattcgctggg
actgaagttttcaaaactctcatgtgtggtgacctgatcagcgctgtgttcgacttcgct
catagcatgtgtgcactgaggctgacggaacagcaggtggcgatcttcagtgcgctggtg
ctcattaaccccgaccgccctggtcttgaggacagaggccgagtgcagaggatgaggaag
gacattgagctggcactgagtcacatcctccacagggagcaccaggagagtctgctgcac
aggctagacgagaaggtggcgatgctgaaggccctgtgctctctgcacatcgagaagctg
cgctggttccagcagctctatccactgactgtgcactccagtttcccacccctgtacaaa
gagctcttcggatctgacgcagagaggccgggagtctcccctccctga
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