Alosa sapidissima (American shad): 121720658
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Entry
121720658 CDS
T11137
Symbol
tcea3
Name
(RefSeq) transcription elongation factor A protein 3 isoform X1
KO
K03145
transcription elongation factor S-II
Organism
asad Alosa sapidissima (American shad)
Brite
KEGG Orthology (KO) [BR:
asad00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
asad03021
]
121720658 (tcea3)
Transcription machinery [BR:
asad03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription elongation factors
121720658 (tcea3)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TFIIS_M
Zn_ribbon_TFIIS
Med26
HVO_0758
DBD_Tnp_Mut
Motif
Other DBs
NCBI-GeneID:
121720658
NCBI-ProteinID:
XP_041962915
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All DBs
Position
10:15816555..15835613
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AA seq
747 aa
AA seq
DB search
MPPIMAREEDLVRIAKKLDKMVSRNNTDGALDLLKELQNFNMTLKLLQETRIGMSVNGIR
KHCTDEEVIALAKILIKNWKRLLESAQNEKAEKSESIKNGTEASKPPGSPIRSSSEEEPG
HRRPNADLKPDSDLLKKHIDRNKKDKHEDEQQKPKRLSVDDGKARPPEAPKKEAERKDVL
KNGVLHAVRPLLPTPTPANASVRPPLSTPPPPPQNRRLEMMRESKTLMDELFPPPPPIHI
PRRPSAESRRERKTLNETTSSSTPNHLQPLRRPSVDMKKDRRDNGNSLHPTPARRPSVEV
KKERKKEHNPSSLRQHSPPPFKRPTTEMKKDRKEPPDPNAPLAPLPFHLHPPAVKKDRKE
PPDPNAPLAPLPLHLHPPPMKKVRKEPDLDVPLPPLPLPLHPTKHQVEDVKKDRKDSTDS
KHHAQKQSSGHSKKDRKDSGDNKPHKKPTVEIKKDRKDSTDSKHQSSKRPSLDGKKERRE
SSEAKSGHHVKRQLSDSKPERRDSTSTKSGGSPSAKKHTGERRESHGSKLGHLGTLQRKA
STDSLDGRKGKPDTPKSPTTPTSPMSPSFNSPGGPLSPRLLTGDSVRDKCIEMLAAALRT
DDDYKDYGTNCDSVAAEIEDHVYKEFRATDMKYKNRVRSRISNLKDPKNPNLRKNVLAGS
IELIRFATMTAEEMASDELKELRNTLTQEAIREHQMAKTSGTTTDLLQCGKCKKKNCTYN
QVQTRSADEPMTTFVLCNECGNRWKFC
NT seq
2244 nt
NT seq
+upstream
nt +downstream
nt
atgccaccaattatggctcgagaggaggacttagttcggattgccaaaaaactggacaag
atggtgtctagaaataacacggatggagccttggacctgcttaaagagctacaaaacttc
aacatgaccctgaaactgttgcaggaaacacgaattggcatgtctgtgaatggaatcagg
aagcattgtactgatgaggaagtcattgcacttgcaaaaatcctcatcaagaactggaag
aggcttctagaatctgcccagaatgaaaaggctgaaaagtcagagtcaataaaaaatgga
acagaggccagcaaaccaccaggaagccctatcaggagctcatccgaggaagagcccggc
cataggaggcctaacgcagacctgaagccagattcagacttgctgaagaagcacattgac
aggaataagaaggacaaacatgaggacgagcagcagaaacccaaacgactgtcagtcgat
gacggcaaagcgcgacctccagaggcgcccaagaaggaagcagaaagaaaggacgtcttg
aaaaatggcgttcttcacgccgtgcgtcctcttctgcccactcctactccggccaacgcc
tcggtgcgtcctcctctgtccactccgcctcctccaccccaaaacagacgtctagagatg
atgagagagagcaaaacactcatggatgaactgtttccaccaccgcctccgatccatatt
cccagacggccgtcagctgagtcaaggagagagaggaaaactctgaatgagaccacatca
tcatctacaccaaatcatctccagcctctcagaagaccgtctgtagatatgaagaaggac
aggcgtgacaatggaaactcactccaccccactccagcccgacgaccttctgtggaggtt
aagaaggagaggaaaaaagagcacaatccatcctctcttcgtcagcactctccccctcct
ttcaagcgccctacaacagagatgaagaaggacagaaaagaaccgccggaccccaatgct
cctttggcccctcttcctttccacctgcaccctccagcggtgaaaaaagacagaaaagaa
ccaccagaccccaacgcacccctggcccctctgcccctccacctgcaccctcctccaatg
aagaaagtgagaaaagaacccgacctggacgttcctcttcctccccttcctcttcccctc
catcctacaaagcaccaggtggaggacgttaagaaagacagaaaagactcgacagactcc
aagcaccatgctcagaaacagtcatctggtcactcaaagaaagacagaaaagactcgggg
gacaataaacctcacaaaaagcccactgtggaaatcaaaaaagacaggaaagactcaaca
gattccaaacaccagtcctctaaaaggccgagcctggatggaaaaaaagaaaggagggag
tcctctgaagctaaatcaggtcatcatgtgaaacgacagctgagcgactccaaacctgaa
aggagagactctaccagcacaaaatctggaggttcaccatcggctaagaaacacacagga
gagaggagggagtcacatggctccaagttgggtcatctcggaacattacagaggaaagct
tccactgatagcttggatggacgaaaagggaaaccggacacccctaaaagtcccactaca
cccacgagccccatgtcaccatccttcaactccccaggaggcccgctgtccccacggctg
ctcacaggggactccgtccgggacaagtgcatcgagatgctggcagctgccttacgcacg
gatgatgactataaagactatggaactaactgtgattccgtggctgcagaaatcgaagac
catgtctataaggagtttagggccacggatatgaaatataagaacagggtgcgtagccgc
atcagtaacctgaaggatccgaagaaccccaacctgcgcaagaatgttctggcaggttcc
atcgagctgattcgatttgccaccatgactgctgaggagatggccagcgatgagctgaag
gagctgaggaacaccctgacccaggaggccatccgtgaacaccagatggccaagaccagc
ggcaccaccactgacctgctccagtgtggcaagtgcaaaaagaagaactgcacctacaac
caggtccagacacgcagtgctgatgagcccatgaccacctttgtgctgtgcaacgagtgc
ggaaaccgctggaagttttgctga
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