Alosa sapidissima (American shad): 121720767
Help
Entry
121720767 CDS
T11137
Symbol
trim71
Name
(RefSeq) E3 ubiquitin-protein ligase TRIM71
KO
K12035
tripartite motif-containing protein 71 [EC:
2.3.2.27
]
Organism
asad Alosa sapidissima (American shad)
Brite
KEGG Orthology (KO) [BR:
asad00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
asad03019
]
121720767 (trim71)
04121 Ubiquitin system [BR:
asad04121
]
121720767 (trim71)
Enzymes [BR:
asad01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
121720767 (trim71)
Messenger RNA biogenesis [BR:
asad03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
121720767 (trim71)
Ubiquitin system [BR:
asad04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRIM/RBCC proteins
121720767 (trim71)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NHL
Filamin
DUF5128
zf-B_box
ANCHR-like_BBOX
SGL
zf-RING_5
zf-C3HC4
zf-RING_2
zf_RING_Vps8_fungal
Ig_GEX2_N
DUF4094
Motif
Other DBs
NCBI-GeneID:
121720767
NCBI-ProteinID:
XP_041963109
LinkDB
All DBs
Position
10:complement(4468900..4497756)
Genome browser
AA seq
810 aa
AA seq
DB search
MASFPDTDLQTCPLCKELCGSSAPISSNSSTSSSSSQTSSSSTSSSRRLHVLPCLHAFCR
QCLEGQRNPGDPLKLRCPTCDQKVSMSESGVDALPSSNFLFNNLLDVVVASEEQNKTNCR
INPHSSLLRPHQFTEPQCSSCDEGNPATSHCLDCQEYLCDNCVRAHQRVRLTKDHFIERL
LESLHIGGRTNNSNTPVSLSQSFHSTYSFLPVFQERMDFCQQHDNAVLRFFCDSCSVPIC
RECSAGRHAGHSFTYLQDAVQDCRSLTIQLLADAQQGRQAVQLSIEKAKAIAEQVELKAK
VVQTEVKTITLRHKKALEERECELLWKVEKIRQVKAKSLYLQVEKLHQNLTKLDTTIATV
QQVLEEGGSLDVLLAREHMLAQIDELKALRCLLQPQEDDRIVFTPPDQALFIAIKSLGLI
SSGAYASASKAHGEGLKRGLQGKVASFTVVGYDHDGEPRLSGGDGVSAVLMGPDGALSSA
DVSDHQDGTYTVSYLPKSEGEHLLSVLICNQHIEGSPFKVLVKSGRSYGGVGLPMVSFGG
EGDGDGQLCRPWGICVDKEGFVVVADRSNNRVQIFKPCGTFHHKFGTLGSRPGQFDRPAG
VACDSQRRIIVADKDNHRIQIFTFEGQFLLKFGEKGTKNGQFNYPWDVAVNPEGKILVSD
TRNHRVQLFGPDGTFLNKYGFEGALWKHFDSPRGVAFNQEGHLVVTDFNNHRLLVIRPDC
QSARFLGSEGTGNGQFLRPQGVAVDQEDRIIVADSRNHRIQVFEANGNFLCKFGTQGNGF
GQMDRPSGIAVTPDGMIVAVDFGNNRILMF
NT seq
2433 nt
NT seq
+upstream
nt +downstream
nt
atggcttcattcccagacaccgacctgcaaacatgccccctgtgcaaggagctgtgcggg
tcttctgctccgatctcctccaactcctctacctcatcgtcctcatctcagacctcaagt
tcatctacctcatcttccagaaggctccacgtactcccctgtctacatgcattctgtagg
cagtgcttagagggccagcggaaccccggcgacccactgaaacttaggtgcccaacttgt
gaccaaaaggtttccatgtccgaatccggggtagacgccttgccatcctcaaattttctc
ttcaacaacttgcttgatgttgtagttgcgtccgaggagcaaaacaagactaactgcaga
atcaacccacacagtagccttcttcgaccacatcagttcaccgaacctcagtgcagttcc
tgcgatgagggcaaccccgctacctcacactgcttggactgccaagagtacctctgcgac
aactgtgtccgggcgcaccagcgggtccgtttaaccaaagaccattttattgaaaggtta
ctggagagcttgcacattggaggccggaccaacaactccaacactccggtgagcctctcc
cagtcgttccattcgacctactcgtttctgcccgtctttcaggagcgaatggatttctgt
caacagcacgataacgcggtgctgcgcttcttctgtgacagctgctcggtgcccatctgc
cgggagtgtagtgccgggcggcacgccggacacagcttcacctacctgcaggacgctgtg
caggactgccgttccctcaccatccagctgcttgctgacgcccaacagggacgccaggct
gtgcagttgagcattgagaaggccaaggcgatcgccgagcaggtggagctgaaggccaag
gtggtgcagacggaggtgaagaccatcaccctgcgccacaagaaggccctggaggagcgg
gagtgtgagctcctgtggaaggttgagaagatccggcaggtgaaggccaagtccctgtac
ctccaggtggagaagctccatcagaatctgaccaagctggacaccaccatcgccaccgtg
cagcaagtgctggaggagggagggagcctggacgtgctgctggcgcgggagcacatgctg
gcacagatcgatgagctgaaggccctccgctgcctgctgcagccgcaggaagacgaccgc
atcgtcttcaccccacctgaccaggcgctcttcatcgccatcaagtccctgggcctgatc
agcagcggcgcgtacgcctcggcctccaaagcccatggcgagggcctgaagcgcggcctg
cagggcaaggtggcctccttcaccgtggtgggctatgaccacgacggcgagccccggctg
tccggaggagacggcgtctcagccgtgctcatggggccagacggggccctgtccagcgca
gacgtctctgaccatcaagacggcacctacactgtcagctacctgcccaagagcgagggc
gagcacctgctctcagtgcttatctgcaaccagcacatcgagggcagcccctttaaggtg
ctggtcaagtcgggccgcagctacgggggtgtcgggctgcccatggtctcctttgggggc
gagggcgacggggacgggcagctgtgccgtccctggggcatctgcgtggacaaggaaggg
ttcgtggtggtggcagaccggagcaacaaccgcgtgcagatcttcaagccgtgcggcacg
ttccaccacaagttcggcaccctgggctcacggccgggccagttcgacaggccggcgggc
gtggcctgcgacagccagcgtagaatcatcgttgcagacaaggacaatcaccgcatccag
atcttcactttcgagggccagtttttactcaagttcggtgagaagggcacaaagaacggg
cagttcaactacccctgggatgtggccgtgaacccagagggcaaaatcctggtgtccgac
acacgcaaccaccgtgtccagctcttcggccctgatggcacgttccttaacaagtacggc
tttgagggggccctttggaagcattttgactcgccccgcggtgtggccttcaaccaggaa
ggtcacctggtggtcactgacttcaacaatcaccgactgctagtcattcggcctgactgc
cagtctgcacgcttcctgggctcggagggaacgggcaacgggcagttccttcgtccgcag
ggtgtcgctgtggaccaggaggaccgcatcatcgtggctgactcccgcaaccatcgcatt
caggtgttcgaggccaacggcaatttcttatgcaagttcggcactcagggcaacggcttt
gggcagatggatcgcccatcgggtatagctgttacccctgacggaatgattgtcgccgtg
gactttggtaacaaccgaatcctcatgttctaa
DBGET
integrated database retrieval system
