Alosa sapidissima (American shad): 121720957
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Entry
121720957 CDS
T11137
Symbol
dhx16
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16
KO
K12813
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 [EC:
5.6.2.6
]
Organism
asad Alosa sapidissima (American shad)
Pathway
asad03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
asad00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
121720957 (dhx16)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
asad03041
]
121720957 (dhx16)
Enzymes [BR:
asad01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
121720957 (dhx16)
Spliceosome [BR:
asad03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
121720957 (dhx16)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_C
WHD_HA2
DEAD
AAA_22
PWI
AAA_19
AAA_30
nSTAND3
Cas3-like_C_2
Flavi_DEAD
Motif
Other DBs
NCBI-GeneID:
121720957
NCBI-ProteinID:
XP_041963420
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All DBs
Position
10:3184464..3197304
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AA seq
1054 aa
AA seq
DB search
MANLEQWVSDRLHDILGLSDRYVAQFMVGLVRKSANLPDFIVRLKQTGTIAVDQKVERFA
QELFEKVPRKQIVEKPSRALERQVQAMEQKNRTYTLLEESDSDGEVTQERGKEKKGREKV
KGKKRKHLRQKQEESASSSEEEKESGQMITKAQKKEDEEDQEEDWEKEERERQQDLEERD
AFAERMKLKDKQKTRSIMERTDKKAYEEAQKRLKMAEEDQRKMLPELRKQSRFEYLKKRE
AEKLEDLEAEIADEEYLFSSDNLSERERKELDYKRTVRDLARDYKKAGAKEKDERKNRYY
MPEENRRKNPPERDLQLDVEEGGHEGGGEQSRWEEARVATATLHFGAKEERERRLKEEQD
KYQLVLEEEEMINFVSSAITMKGTRSEKEEAEPQLSQADKQMQSIQEVRRSLPVFPYRQD
LLSAIEQHQVLIIEGETGSGKTTQIPQYLMEEGYNAGGLKIGCTQPRRVAAMSVAARVAQ
EVGVKLGNEVGYSIRFEDCTSERTVLKYMTDGMLLREFLTEPDLASYSVVIIDEAHERTL
HTDILFGLIKDISRFRADLKVLVASATLDTERFSCFFDDAPVFRIPGRRFPVDIFYTKAP
EADYLEACVVSVLQIHVTQPHGDVLVFLTGQEEIEACCELLQDRCRRLGSKISELIVLPI
YANLPSDMQAKIFNPTPPGARKVVVATNIAETSLTIDGIIYVIDPGFCKQKSYNARTGME
SLIVTPCSRASANQRAGRAGRVAAGKCFRLYTAWAFKHEMEETTVPEIQRTNLGNVVLLL
KSLGINDLIHFDFMDPPPHETLVLALEQLYALGALNHLGELTKLGRRMAELPVDPMLSKM
ILASEQYKCSEEVLSIAAMLSVNNSIFYRPKDKVVHADNARMNFVVPGGDHMVLLNVYSQ
WVESGYSTQWCYENFIQFRSMKRARDVREQLEGLMDRIEVEVCSSQGDNVPIRKAVTAGY
FYHTARLSKGGYKTVKHQQTVYVHPNSSLFEEQPRWLIYHELVFTTKEFMRQVIEIDSGW
LLEVAPHYYKNKELEDSSSKKMPRKQGKAREELG
NT seq
3165 nt
NT seq
+upstream
nt +downstream
nt
atggccaacctggagcagtgggtgagcgaccgccttcatgacatcctggggctgagtgac
cgatatgtggctcagttcatggtaggtctggtgcgaaagtctgctaatttgccagacttc
attgttcgcctcaagcagaccggcaccattgctgtcgaccagaaagttgagaggtttgca
caggaattattcgagaaggtgccacgaaaacagatagtggagaaaccatctcgagctctg
gagcggcaagtgcaagccatggagcagaaaaatcgtacctacactctgctagaggagagc
gacagcgatggagaagtaacacaggagagaggaaaggagaagaaagggagggagaaagta
aagggaaagaagagaaagcacttgagacagaaacaggaagagagtgcctcatccagtgaa
gaggaaaaggaaagtggccagatgattaccaaagcacagaagaaagaggatgaggaggac
caagaggaggactgggaaaaagaagagcgcgagcgacagcaggacctggaggaaagagat
gcttttgcagagcgcatgaagttgaaggacaagcagaagacccgaagtatcatggagagg
actgataaaaaggcttacgaggaagctcaaaaaagacttaagatggcagaggaagaccaa
aggaaaatgcttcctgagttgagaaagcagtcacgctttgagtacctgaagaaacgtgaa
gctgagaaattagaagacctggaggctgagatagccgatgaagagtacctgttttcctct
gacaacctctctgagcgagagagaaaagaactggattacaagcgtacagtcagagatttg
gccagggactacaagaaagcaggagccaaggaaaaggatgaaaggaagaatcgctactac
atgccagaggagaataggagaaagaaccctcctgaacgggatctccagctggatgttgaa
gaaggggggcatgagggcgggggggagcagagccgctgggaagaggcacgggtcgctaca
gcaactctgcactttggcgccaaggaggagagggagcgtcgactgaaggaggagcaagac
aagtaccagttagtactggaggaggaggagatgatcaactttgtcagcagtgccatcacc
atgaaaggaacacggtcagagaaggaggaggctgagccacagctctctcaggcagataaa
cagatgcagtcgattcaggaggttaggcggagtctgcctgtctttccctatcgacaagac
ctactatcagctattgagcagcaccaggtgctcattattgagggggagactgggtctggc
aaaactacacagatcccacagtatctcatggaagagggatataatgctggaggtttgaag
attggttgcactcagcctcgtcgagtagcagcaatgtctgtggcagctcgagtggcacaa
gaagttggagtaaagcttggaaacgaggtgggctacagtattcgatttgaggactgcaca
tcagaacggacagtactaaagtacatgactgatggaatgcttttgagagagtttctcaca
gagccagatcttgccagctatagtgtggtcataattgatgaagcccatgagcgcaccctc
cacacagacatcctttttggcctgataaaagacatttctcgtttccgtgctgacctgaag
gtgctagtggccagtgctacactggatacagaacgtttctcttgcttcttcgatgatgct
cctgtcttcaggatacctggacgtcgtttccctgtagacattttctacacaaaggctcca
gaagctgactatctggaggcatgtgttgtgtccgtgctgcagatccacgtcacacagccc
catggagatgtactggtgtttctcacagggcaggaggagattgaggcatgctgtgagctt
ctacaggatcgttgtcggcgactggggtccaagatatctgagctcattgtcctgcccatc
tatgccaacctgccctcagacatgcaggccaagatcttcaacccaactccacctggtgct
cgcaaggttgtggtagccaccaacattgcagagacctccctcactattgatggcatcatc
tatgtcattgacccaggcttttgtaagcagaaaagctataatgctcgcacgggcatggag
tccctcatcgtcacaccatgttcacgggcgtcagccaatcagcgggctggaagagcaggc
agagtagctgctgggaagtgcttccgtctctacactgcttgggctttcaagcatgagatg
gaggaaacaacagtaccagagattcagaggaccaatctgggcaacgtggtgttgctgctg
aagagtctgggaattaatgacctcattcactttgactttatggacccacctcctcatgag
acacttgttctagctttggagcagctctatgctctgggtgccctcaaccaccttggagag
ctcaccaagcttggcaggaggatggctgagttgccagtggaccccatgctgagcaaaatg
atcctggcctcagaacagtacaagtgttcagaagaggtactgagcattgctgctatgctc
tccgtcaataactcgatcttctaccgaccgaaagacaaagtagttcatgctgataatgca
cgcatgaactttgtagtgcctggtggagaccatatggtgctgctcaacgtctacagtcag
tgggtggagagtggttattccacacagtggtgttatgagaactttatccagttccgctcc
atgaagcgtgcaagggacgtgcgtgaacagctggaaggtctgatggatagaatagaagtg
gaggtgtgcagctcccagggagacaatgtgccaatccgcaaggcagtgacagcgggctac
ttctaccacacagcacggcttagcaagggtggctacaagacagttaagcatcagcagacc
gtctatgtccatcccaatagctccctttttgaggaacagccacgctggcttatctaccat
gaacttgtcttcaccacaaaagagttcatgagacaggttattgagatagatagtggctgg
ctgctggaggtggctcctcactactacaagaacaaggagctggaggacagcagcagtaag
aagatgccacggaagcagggaaaggcacgtgaggaactgggctga
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integrated database retrieval system
