Alosa sapidissima (American shad): 121721194
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Entry
121721194 CDS
T11137
Symbol
cnot3a
Name
(RefSeq) CCR4-NOT transcription complex subunit 3a isoform X1
KO
K12580
CCR4-NOT transcription complex subunit 3
Organism
asad Alosa sapidissima (American shad)
Pathway
asad03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
asad00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
121721194 (cnot3a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
asad03019
]
121721194 (cnot3a)
Messenger RNA biogenesis [BR:
asad03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
121721194 (cnot3a)
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
121721194 (cnot3a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not3
NOT2_3_5_C
DUF4407
Motif
Other DBs
NCBI-GeneID:
121721194
NCBI-ProteinID:
XP_041963851
LinkDB
All DBs
Position
10:28843624..28855152
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AA seq
968 aa
AA seq
DB search
MADKRKLQGEIDRCLKKVAEGVEQFEDIWQKLHNAANANQKEKYEADLKKEIKKLQRLRD
QIKTWVASNEIKDKRQLVENRKLIETQMERFKVVERETKTKAYSKEGLGLAQKVDPAQKE
KEETEQWLTNTIDTLNMQVDQFESEVESLSVQTRKKKGDKDKQERIEELKRLIERHRYHI
RMLETILRMLDNDSIQVDSIHKIKDDVEYYIDSSQDPDFEENEFLYDDLDLEDIPAALMA
TSPQGQSNLEDEMFLQSSSTPTSTTSSSPIPPSPAAGTASPPGLLLLHQPEAALAAPNTP
HPPLLSSISYPGLSSTLPWENSEEDKKRGRSTDSEVSQSPVKNGNPSHLSFSSSSSSSSG
STPSSVSMAAVVGGGPAVSSGSNLLGSFSSAVQQHPPQSQSQQPPAQQPQQTQPKTPSTP
IPIPSNSTPSPPSHPTLPTSSTPSLPSSSTPAPATPNSQPLVSSGPSAVASGLGLGLGLG
LGKSGVTVTSSSSQMSSLGLSGMTGSLSTMAGLLSASTPAPYAQAAAGGVGSAPGGPVGS
GSSGGLSSTVPTASSVMVVGVGGGVSSAGATSNGTGSSLGLLGSSPGHGVLGGSILSLVQ
QGQSALQGAPQVPLSPVGSAPGSSAGVGLMGGNGGSTGAAGSGVGGNSAPARPPSVLKQN
GGTSENLFSYSAIVADNTPDSTLSSGSQSQSSQPSSLSSSGNPPLDNGPSLLSSITLPPS
SPSPSFTDNTPGGGSLLNGPHSYTPNSEVIKAPEPLSSLAAMAKRAAMVTGMDGEISSIH
LPERDIFTGSAPSGPPVAPQPAVSEVNLPPSLGVCPLGPTPLSKEQLYQQAMQESAWTHM
PHPSDSERIRQYLMRNPCPTLPFHHQVPPHHSDSIEFYQRLSTETLFFIFYYLEGTKAQY
LSAKALKKQSWRFHTKYMMWFQRHEEPKTITDEFEQGTYIYFDYEKWGQRKKEGFTFEYR
YLEDRDLQ
NT seq
2907 nt
NT seq
+upstream
nt +downstream
nt
atggctgataaaagaaaactccaaggtgaaatagatcgatgtttgaaaaaagtcgcagag
ggtgttgagcagtttgaagacatctggcaaaagttacacaatgcagccaatgccaaccag
aaggagaagtatgaggctgacctcaagaaagaaatcaaaaagctccagcgactacgagac
cagattaagacatgggtggcatccaacgagatcaaggataagaggcaattagtggagaac
cgcaaattgatagagacgcaaatggagcggtttaaagtagtagagagggagaccaagacg
aaagcttactccaaggaagggctgggtttggcccagaaagtggaccccgctcagaaggag
aaggaggaaacggaacagtggctaacgaatacgatagacacactaaacatgcaagtggac
cagtttgagagtgaagtggagtccctctctgtccaaacaaggaaaaagaagggagacaaa
gataaacaagagcgcatagaggaactgaagaggctgatcgagcgccaccggtaccatatc
cgcatgctagagaccatcctgcgaatgcttgacaacgactcaattcaggtggattccatc
cataagatcaaagatgacgtggagtactacatcgactcctcccaggaccccgactttgag
gagaatgagttcctctacgacgacctggacctagaagatatcccggcggcgttgatggcc
acctcacctcaaggtcaatcaaacttggaggatgagatgttcttgcagtccagcagcacg
ccgacctccaccacctcctcctcgcccatccctccatcgcctgcagccggcaccgcgagc
ccgccaggcctcctgctcctccatcagcctgaggccgctcttgctgcacccaacacccca
cacccacctctcctctcctccatcagttacccaggcctctcctctactctcccttgggag
aactctgaagaggacaagaaaagagggcggtccaccgacagtgaagttagtcagtcacct
gtgaagaatgggaacccatcgcacttgtcgttctcctcctcctcctcctcttcctctgga
tccacgccctcgtcggtctccatggccgcagttgtcgggggaggaccagccgtgtccagc
gggagcaacctcctgggcagtttcagcagcgccgtgcagcagcacccccctcagtcccag
tcccagcagccgccagcgcaacagccccagcagacccagcccaagaccccctccaccccc
atccccatcccctccaacagcacccccagcccccccagccaccccacactccccacctcc
agcaccccctccctgcccagctcgagcacccccgccccggccacgccaaactcccagccc
ctggtctcctcggggcctagcgcggtggcctcgggcctgggcctggggcttggcttgggc
ttggggaagagcggcgtgactgtgaccagcagttcgtcgcagatgtccagcctgggcctg
tcggggatgaccggctcattgagcaccatggcagggcttctctccgcgtccacgccggca
ccgtacgcccaagcggccgcgggcggagtgggcagcgcccccggtggtccggtggggagc
ggaagcagtggcggcctcagcagcacggtccccacggcgagctcggtcatggtcgtcggc
gttggaggaggcgtcagcagcgcgggcgcgaccagcaacggcaccggctcgtctctgggg
ctcctagggtccagcccggggcacggggtactgggcggcagcatcctgagcctggtgcaa
cagggacagtcggccctgcagggggcaccgcaggtacctctcagccccgtgggctctgcc
ccgggctcgagcgccggcgtgggcctcatggggggcaacggaggaagtacaggggcagcg
ggctcaggagtcgggggaaactcagcgcccgccagacctcccagtgttctcaaacagaat
ggaggcacaagtgagaaccttttcagttacagcgccattgtcgcagacaacacacctgac
tccaccctcagcagcggtagccaatcacaaagcagccagccctcatctctaagctcctcg
ggcaatccaccgctggataacggccccagtctcctgagctccatcacccttccaccctcc
tcaccctctccctcgttcacggacaacacccctggtggtggaagtctgctcaacggcccg
cactcctacacaccaaactctgaggtcatcaaggcccctgagccgttaagttctctggct
gccatggcaaagagggcagctatggtaacaggaatggatggagagatttcctccatacat
ctccctgaaagagacatattcacaggctcggcccctagcgggccacctgtggcccctcag
ccagccgtctccgaggtcaatctgccaccatcgttaggggtgtgtccactgggccccacg
cccctgtccaaagagcagctctaccagcaggccatgcaggagtctgcgtggacacacatg
cctcacccgtccgactccgagagaatcaggcaatacctgatgaggaacccgtgtcccact
cttcccttccaccatcaggtccccccccaccactccgactccatcgagttctaccagaga
ctgtccactgagaccctcttctttatcttctactacctggagggcacaaaggctcagtat
ttgtccgctaaagctctgaagaagcagtcgtggaggttccacaccaagtacatgatgtgg
tttcagagacatgaagagcctaagaccatcactgacgagtttgaacagggcacatacatc
tactttgactacgagaagtggggccagcgcaaaaaggagggtttcacgtttgagtaccgc
tacctggaggaccgggacctgcagtga
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