Alosa sapidissima (American shad): 121721378
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Entry
121721378 CDS
T11137
Symbol
arid1aa
Name
(RefSeq) AT-rich interactive domain-containing protein 1A isoform X1
KO
K11653
AT-rich interactive domain-containing protein 1
Organism
asad Alosa sapidissima (American shad)
Pathway
asad03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
asad00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
121721378 (arid1aa)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
asad03000
]
121721378 (arid1aa)
03021 Transcription machinery [BR:
asad03021
]
121721378 (arid1aa)
03036 Chromosome and associated proteins [BR:
asad03036
]
121721378 (arid1aa)
Transcription factors [BR:
asad03000
]
Eukaryotic type
Helix-turn-helix
ARID
121721378 (arid1aa)
Transcription machinery [BR:
asad03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
121721378 (arid1aa)
Chromosome and associated proteins [BR:
asad03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
121721378 (arid1aa)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BAF250_C
ARID
Motif
Other DBs
NCBI-GeneID:
121721378
NCBI-ProteinID:
XP_041964190
LinkDB
All DBs
Position
10:15680100..15717366
Genome browser
AA seq
2440 aa
AA seq
DB search
MAAQVASATTLNTSPPSELKKPDRDPKEESVPGEKQQENKEAGLESGSPGRGELQDGADV
GNAGGGGESEMKNGNGNPSRVNNNQNDSAGADGNNHPGMVHHHASAFPPPSYGYSPHYGR
APFHQHGGQQSPGMAAAAGPAALSSNLMDPYQPNSHDHSFPNHQFNNYSPFPNRTPYPGQ
GYAMNSPRNTQAQAAGGQAAKQQTAGGSAMAASYNNPRYNMGNPQPTATPTLNQLLTSPS
STRGYPNYPPSDYNNQEGGNKGPTDLGSSGQYGGGHPGWQQRTHHPPPMSPGSTGQPLGR
NQPPGSMEQMKMRGQPYGAGSPYSQQPHQGPPPGAQQGGPYPGQSYGPPGPQRYTMGMQG
RMQYGQQMATYGQQGPGGYGGQGQQGPGGYGGPGQQPYYSQQGQHPHGGQQPSPYPQPPP
TQPGAQGPYPQQPHPSQPPSAHGPGGPPYPQPHMPPHAQGPMGGGPSQGPPQSQPPYAQQ
TQQAQQAQQAHQAQQAQQAQQAQQAQQAQQAQQQPPQASQSPYPSQQQQPPSQPQSQASS
QAPPASQTQASYPPQQGPVPPSSQQTPAQTSTASSQQAPGHGQSGPYSQNAQQQPQQQPP
QQRQPPPEQQQQQQQQQQQQQQQQQQQQQQQQQSPYQRFPPPPPQQELSQESFSSQSSAP
ASNQPLASSKSASEDAGMQGRPSSLPDLSGSIDDLPTGAESALSPGVSTSGVSSSQGEQS
NPAQSPFSPHTSPHLPGIRGPSPSPVGSPASATASRSGPLSPATMPGNQMPPRPPSVQSD
GILHPSMNQSAMAQERGFLQRNPQMPYGSPQSGSALSPRQSSGAQMHPGMGPYQQNNSMG
NFGPQGGQYGPQGYPRQPGYGGMPNANYPGGPGMGGSMNPMPGQGGGPPYGGMPPGRMPP
GQMGVRPPYGPNMGPNMGNMPPQVGSGMCPPPGLNRKPPDAAAAAAAAAAMQHGATNSIH
NRLPGYPNMSPGMMGSGPPYGPSMNSMPGMMNAQGPPFPMGGNMANNSSGMAPSPEFGLD
GKMNQAQKMNNKVEGTPKTETKSKKSSSSTTTNEKITCLYEMGPEPERKMWVDRYLAFIE
EKAMGMNNLPAVGRKPLDLFRLYISVKEIGGLTQVNKNKKWRELATNLNVGTSSSAASSL
KKQYIQCLYAFECKIERGEEPPPEFFNTDSKKNQAKVQPPSPAGSGSLQGPQTPQSTSSS
MAESGDLKPPTPASTPHTQMPPMPGGRSSVNLQDPFADGSDPAFSRRNAMTPNSGYQPGM
GTPEMASRMGPYEPNKDPFGGMRKVGEQFIPSGQGPNSGIGESYNRGPPGPLGSMPPMGQ
RQQYPYGPGYDRRAESGMGPEGSLGPGGPQPNMMPSSTDTGMYSPNRFPPQQQRHDSYGN
QYPGQVAPPGGPYPSQQPGMYPQQQPNYKRPVEGGYPPAKRHEGEMYSGPFTAQQQQQQQ
QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQRQQQQQQQQQQPQQEQQSSTPS
ATPSGPGPVPVQQEMFNQYSGGYPGPERRAPGPGPQGQFPYPFGRERMQPGSGPSAQGSM
PSQMMGSPMQSGPEGPQAGIWQGRGEVGFPNFPNRQGPGGPQQGPGFHPGMNRSEEMMSS
EQQRMNHEGPWPGQMGPRQPPFGAGGAGPPMGRSMQSNYQSPQSMQNHIPQVSSPTPMPR
PMESRTSPSKSPYMQGGIKMHKAGAPVPASHIVPQPVQPPLMRRDMPFPPGSIEATQPVL
KPRRRLTMKDIGTPEAWRIMMSLKSGLLAESTWALDTINILLYDDNSISTFNLCQLPGFL
ELIVEYFRRCLIEIFGILREYEVGDPGQRTLLDPNALTKEENGLEAEDNLPEDMEEGGED
EDEDEEEEEEQQAQSDTPQVKQEEKEMPVDEEGTSKSDESKGKENAGTSSKEGSSETPSS
TDPVAPQEKPKQASKFDKLPLKVVRKKDPFVVDCSARLGRVTEFDSGLVHWSVGGGDITE
HIQTHFESRHDPLQPRQQPAGSIQTSSRRKASAKDKDKDTSTASTSREDKSTEEEGKASQ
PSSSSSSSSSKTTALTSSTSEARKDADTSAETSPQQKEGTERITDSADATTGSNGGVLTE
PIIPQRVTTILEDEPHSKDEAPLSTLAHWQDSLARRCVCVSNIVRSLSFVPGNDQEMSKH
PGLLLLLGRLVLLHHWHPERKQAPLTYEKEEEADESVGNDADEWWWDCLELLRENCLVTL
ANISGQLDLSVYTESICLPLLDGLLHWAVCPSAEAQDPFPTLGANAALSPQRLVLETLSK
LSIQDNNVDLILATPPYSRLEKLYGNLVRLVGERKVPVCREMAVVLLANLAQGDSMAARA
IAVQKASVGNLLGFLEDSLAATQFQQSQGSLMHMQAPFEPTSVDMMRRAARALHALAKVE
ENHSEFTLYESRLLDLSVSPLMNSVVSHVICDVLFLIGQS
NT seq
7323 nt
NT seq
+upstream
nt +downstream
nt
atggccgctcaggtcgccagcgctaccactctcaacaccagcccgccctccgaactgaaa
aaaccggatcgagacccaaaggaggagtcggtaccgggagagaagcagcaggaaaataag
gaagcgggattagagagtggatctccgggccggggggaactgcaggacggggccgatgtg
ggaaatgcagggggaggaggagagtcggagatgaagaacggtaacgggaatccgtctcgg
gtaaataataatcagaatgattccgcgggagccgacgggaataatcatcccgggatggta
caccatcacgcatccgcttttccgccaccttcatatggttacagtccgcactacggccgg
gccccttttcatcaacatggcggacaacaaagccctggcatggcagctgcagcggggcca
gccgcgctgtcgagcaacttgatggacccatatcagcccaactctcatgatcacagcttt
cccaatcaccagttcaacaactacagcccattcccgaaccgaaccccctatcccggtcaa
ggatacgcaatgaactccccgcgaaacactcaagctcaggcggcaggggggcaggcagcc
aagcaacagacagcgggaggatctgctatggctgcatcatacaataacccgagatataac
atgggaaatccgcagcccactgccaccccaactctcaaccaacttctaacctccccaagc
tcaacgaggggctacccaaactacccaccaagcgattataacaaccaggaagggggtaat
aagggaccaacagatttgggcagtagcggccagtatggtgggggccatccgggttggcaa
caaaggacacatcacccgccacccatgagcccgggaagtacagggcaaccactgggtaga
aaccagccaccaggctccatggagcagatgaagatgaggggtcagccgtatggcgcaggc
agcccctactcccagcagccccaccagggcccccctccgggcgcccagcagggaggaccc
taccctggacagagctacggcccaccagggcctcagcgctacaccatgggcatgcaggga
cgcatgcagtatggacagcagatggccacttatggccaacagggaccaggcggatatgga
gggcagggccaacagggaccaggcggttacggaggaccgggccaacagccctactacagc
cagcagggccagcatccccacgggggtcagcagccgtctccgtacccccagccccctccc
acgcagccgggcgctcagggcccctacccccagcagccgcacccttcccagccgccctca
gcgcatggcccgggtggacccccctacccacaaccccacatgcctccccacgcccagggc
cccatggggggagggccctcgcagggaccccctcagtcccagccgccgtacgcccagcag
actcagcaggcgcaacaagctcagcaggcgcatcaggcgcagcaggcgcagcaagcgcag
caggcgcagcaggcgcagcaggcgcagcaagctcagcagcagccaccccaggccagtcag
tccccgtacccgtcgcagcagcagcagcctccgagccagccgcagtcacaggcgagctcc
caggctccgcctgcctcacagacccaggccagctaccctccccagcagggccctgtcccg
ccctcgtcccagcagacaccagcccagacctccacggcctcttcccagcaggccccgggc
catgggcagtctgggccctactcccagaatgctcagcagcagcctcagcagcagcctccg
cagcagcggcaacctccaccagagcagcagcaacaacaacaacaacaacaacaacaacaa
caacaacaacaacaacaacaacaacagcagcagcagcagtcgccttatcagcgatttccc
cctccacctcctcagcaggagctctcccaggagtccttcagctcccagtccagtgccccg
gcctccaaccagccgctggcctccagcaagagcgcctccgaggatgctgggatgcaggga
cggccgtccagcctccccgatctgtcggggtccattgacgacctgcccacgggcgcagag
agcgcgctcagtcccggcgtgagcacctcgggcgtgtcgagcagccagggcgagcagagc
aacccggcgcagtcgcccttctccccccacacctcgccacacctgccgggcatccgaggg
ccctcaccctcccctgtgggctcgccagccagcgccaccgcctcccgctcggggccgctc
tcccccgcaaccatgccaggaaaccagatgcccccacgaccccccagtgtgcagtcggac
gggatcctgcatccctccatgaaccagtctgccatggcccaggagagaggtttcctgcag
aggaaccctcagatgccctacggttcgccccagtcgggctccgccttatcgccccgacag
tcctcgggagcccagatgcatcctgggatggggccctatcagcagaacaactccatgggg
aactttgggcctcagggtggccagtatggccctcaaggttacccccggcaacctggatat
ggtggcatgcccaatgccaactaccctggtggccctggcatgggtggatcaatgaacccc
atgccaggccaaggaggaggtcctccctatggaggtatgccccctggaaggatgccaccg
gggcagatgggtgtccgacccccctatggacctaacatgggccccaacatgggcaacatg
ccccctcaggtgggctctggaatgtgcccgcctccgggcctcaacaggaagccacctgat
gcagccgcagcagcagcagctgctgctgccatgcagcatggcgccaccaactccatacac
aacaggctgcctggttaccccaacatgtcgccgggcatgatgggaagtggtcctccctat
ggcccctccatgaacagcatgccaggcatgatgaacgcccagggcccccctttccccatg
ggcgggaacatggccaataacagcagtggaatggctcccagcccggagtttggccttgat
ggaaaaatgaaccaggcccagaagatgaacaacaaggtggaaggaacccccaagacagag
accaagtccaagaagtccagctcatcgacgacgaccaacgagaagatcacgtgtctgtac
gagatgggccctgaaccggagaggaaaatgtgggtggaccgctacctagccttcatcgag
gagaaggccatgggcatgaacaacctgcccgccgtaggccgcaagcccctcgacctcttc
cgtctctacatctctgtaaaggagattggaggcctcacacaggtaaacaagaacaagaag
tggcgtgagctggccaccaacctgaacgtgggtacctccagcagtgctgccagctcgctg
aagaagcagtatatccagtgtctgtatgccttcgagtgcaagattgagcgcggagaggaa
ccgccgccagagttcttcaacaccgacagcaagaagaaccaggcaaaggtccagccgccc
tcgcctgccggctctggatccctgcagggtccccagaccccccagtccaccagcagctcc
atggcggagtcgggggacctgaagccccccaccccggcctccaccccccacacccagatg
ccacctatgcctggcggcaggagcagtgtgaaccttcaggacccattcgctgatggcagt
gacccagccttctccaggaggaacgccatgacgcccaactcgggctaccagcctggcatg
ggcacccctgagatggccagccgcatggggccctacgagcccaacaaggaccccttcggt
ggcatgcgaaaagtgggagagcagtttattccctctggccaaggccctaacagcggtatt
ggggaatcctacaaccgcggccctccaggtcccttgggcagcatgccccctatggggcag
aggcagcagtacccctacggcccgggctacgacagaagggctgaatcaggtatgggccca
gaaggcagtttgggcccaggggggccgcagccaaacatgatgccttccagcactgacaca
gggatgtactcgccaaaccgcttccctccccaacaacagcgacacgattcctatggaaat
cagtatcctggacaagtggctccccctggtggaccttaccccagtcagcagccaggaatg
taccctcagcaacagccgaactacaagcgaccggtagaaggtggttacccaccagcgaag
cgtcatgagggagagatgtacagtggccccttcactgctcagcaacagcagcagcagcag
caacaacaacaacaacaacaacaacaacagcagcagcaacaacagcagcagcagcagcaa
caacaacaacaacagcaacaacagcagcagcaacagcagcagcaacaacaacagagacag
cagcagcagcagcaacaacagcagcaaccgcaacaggagcagcagtcctctaccccctct
gcaacgcctagcggcccaggccctgtccctgtccagcaggagatgttcaaccagtacagc
ggaggctacccaggcccagagcgacgtgccccgggccctgggccccagggccagttcccg
tacccatttgggcgcgagcgcatgcagccgggctctggtcccagtgcccagggctccatg
ccctcacagatgatgggcagccccatgcagtctggccctgagggcccccaggcgggcata
tggcagggccgcggcgaggtgggcttccccaacttccctaaccggcagggccccggtggc
cctcaacagggtcccggcttccaccccggtatgaaccgctcagaggaaatgatgtcgtcg
gaacagcaacgcatgaaccatgagggcccatggcccggccagatgggtcccaggcagccc
cctttcggggcggggggagccggtccgcccatggggcggtccatgcagtccaactaccaa
tccccgcagtccatgcagaaccacattccacaggtgtccagccccacgcccatgcccagg
cccatggaaagccggacctcgcccagcaagtcgccctacatgcagggcggcatcaagatg
cacaaggcgggcgcgcctgtgccagcttcacacatcgtgccgcagcccgtgcagcccccc
ctcatgaggcgggacatgcctttcccaccaggttccatcgaagctactcagcctgtgctc
aaaccacgaaggaggctcaccatgaaggacattggcacaccagaggcatggagaataatg
atgtcgctgaagtcaggtctactggctgagagcacttgggctttagacaccatcaacatc
ctgctgtatgatgacaacagtatttccactttcaacctctgccagcttccgggtttcctg
gagctgattgtggagtatttccggcgctgcctgatcgagatcttcggcattctgagggag
tacgaggtgggtgatcctgggcagcggacgctgctggaccccaatgccttgaccaaggag
gagaacggcctggaggccgaagacaacctgcccgaggacatggaggagggaggagaggac
gaagacgaggatgaggaggaggaggaagagcagcaggcccagtcagacacgcctcaggtc
aagcaggaggagaaggagatgccggtggacgaagaggggactagcaagagtgacgagagc
aagggcaaagagaacgctggaacctcctccaaggaagggtcatctgagacgccgtcgtcc
acggaccctgtggctcctcaggagaagcccaagcaggccagcaagtttgacaagctgccc
ctgaaggtggtgcgcaagaaggacccgtttgtggtggactgctcagcgcggcttggccgg
gtgacggagtttgacagcggcctggtccactggagcgtgggcgggggagacatcacagag
cacatccagacccacttcgagagccggcacgaccccctgcagcctcgccagcagcctgcc
ggctcgatccagacctcgagcaggaggaaagcgtccgcaaaggacaaagacaaggacacg
tcgaccgcctccacttccagggaggacaagagcactgaggaggaggggaaggcttcgcaa
ccttcgtcatcgtcatcttcctcctcatcgaagacgacggcgttaacgagcagcacttca
gaggccaggaaggacgcagacacttccgccgagacgtcgccacagcagaaagaggggacc
gagaggataaccgattcggccgacgccaccacggggagcaacggcggtgtcctgaccgag
cccatcatcccgcagcgcgtgaccaccatcctggaggacgagccgcacagcaaggacgag
gctccactcagcacgctggcccactggcaggactcgctggcgcgccgctgcgtctgcgtg
tccaacatcgtgcgcagtctctccttcgtgccgggcaacgaccaggagatgtccaagcac
ccgggcctgctgctgctgctgggccgcctggtgctgctgcaccactggcaccccgagcgc
aagcaggcgccgctcacctacgagaaggaggaggaggccgacgagagtgtgggcaacgac
gccgacgagtggtggtgggactgcctggagttgctccgcgagaactgcctggtgacgctg
gcgaacatctcgggccagctggacctgtccgtctacacggagagcatctgcctgccactg
ctcgacggcctgctccactgggccgtgtgcccgtcggccgaggcgcaggaccccttccct
acgctgggtgccaacgcggcgctctcgccgcagagactggtcctggagaccctcagcaag
ctgagcatccaggacaacaacgtggacctgatcctggccacgccgccgtacagccgcctg
gagaagctctacggcaacctggtgcgcctggtgggcgagcgcaaggtgcccgtgtgccgt
gagatggcggttgtgctgctggccaacctggcgcagggcgacagcatggcggcgcgcgcc
atcgccgtgcagaaggccagcgtgggcaacctgctgggcttcctggaggacagcctggct
gccacgcagttccagcagagccagggctcgctcatgcacatgcaggcccccttcgagccc
accagcgtggacatgatgcggcgggcggcccgcgccctgcacgccctggccaaggtggag
gagaaccactcggagttcacgctgtacgagtcgcggctcttggacctgtctgtgtcgccg
ctcatgaactcggtggtgtcccatgtcatctgtgatgtactgtttttgattggccagtca
tga
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integrated database retrieval system
