Alosa sapidissima (American shad): 121721446
Help
Entry
121721446 CDS
T11137
Symbol
sema6e
Name
(RefSeq) sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6E isoform X1
KO
K06842
semaphorin 6
Organism
asad Alosa sapidissima (American shad)
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sema
PSI
Motif
Other DBs
NCBI-GeneID:
121721446
NCBI-ProteinID:
XP_041964309
LinkDB
All DBs
Position
10:11071461..11185279
Genome browser
AA seq
1080 aa
AA seq
DB search
MRLSLGPPRPLLAWALALVLSFCPLPARLGIMPFPQDLEPISIVGSEYSYLYPSFQGLME
DNDTARLGLDFQRMLRINHMLYIAARDHVFAVNLTSSSQQIVTQQKLTWKTKNVEKCTVR
GKNSDECYNYIKVLVPRNDETLFACGTNAFNPTCRNYKMSTLEQVGEEVAGQARCPFESR
QSNVGLFAGGDFYSATMTDFLASDALIYRSLGESSPVLRTVKYDSKWLREPHFLHAIEYG
NYVYFFLSEIAVEYTALGKVVFSRVARVCKNDNGGSPRVLERYWTSFLKARLNCSVPGDS
FFYFDVLQSLTNVMQINQKPAVLGVFTTQANSITGSAVCVFYMDDIERVFNGKFKEQRNS
ESAWTPVPEEMVPKPRPGSCAGDGPAASYKSSTTFPDDTLTFIKSYPLMDEAVPSVNDRP
CFTRTTSRFKLTQLAVDTSAGPYKNHTVLFLGSEDGRVLKVLASTHANASFSTQVLEDID
VYNPAKCNIRGEDRRVLGLELDKDHHALFVAFSSCVVRVPLSRCAHYGSCRTSCLSSRDP
YCIWLKMGLCATMAPGIKQGFDQDVESGYTQYPDSCHDVLATTRKQNTVVDSAYGKTTPT
TTASTTSQAAVLPKVPGDSQKGTGPEGHPSVGDQGSPDSEAISVEGVRRPPEVEKTNHSV
HYTLLIACVLVAFVLGAFLSGFLVSCYCNHNSSKTKRLPKDPEVSIPHALSLRSLAKLNG
LLESQSKEDKLDVPSPKVYNSFFGNGKEHPSRRHHGMADLIHPHHHHHGSELSGLPTPDS
TPELPIKSMKAFKNQWEKNQNCNNAKEPKPHNVPGSRPSSGLQQQVFPFSHGLSNGQALG
GSMHLEERKIHNTERMMSQQPYHGYPHKVVDVTSLDELLKHIHEINVTTGGMGGGGKVMT
SSMSAHAGQMAFANRVQPQIPETETAPYYSSSTLPRDSLTRRMDVPPDMPLPPPSQSTLE
RLSRHPGHRHSLIAASKMAAGGGGGMVARQHSFNHQGGRPLMLARINSAGSSSGGGGGCE
VRHPLIPGSYLMRQHSYSEQPECHRGVNVRRTASLKPDVPPKPLFIPATSPVNQQGKFNY
NT seq
3243 nt
NT seq
+upstream
nt +downstream
nt
atgaggctgtcgctggggcccccgcggcccctcctggcctgggccctggccctggtcctc
tccttctgccccctccctgcccgcctcgggatcatgccattcccccaagacctggagccc
atcagcatcgtcgggagcgaatactcgtacctgtaccccagcttccaagggctaatggag
gacaatgacacggcgcggctgggcttggattttcagcggatgctccgcatcaaccacatg
ctctacatcgctgccagggatcacgtctttgccgtcaatctcacttcctcgtcacagcag
attgtcactcagcagaagctgacatggaagacaaagaatgtggagaaatgcacagtgagg
ggcaagaacagcgatgaatgttacaactacatcaaagtgcttgtcccgcgcaacgatgaa
acccttttcgcgtgcggcaccaatgccttcaaccccacctgccggaattacaagatgtcc
actctggagcaggttggagaggaggtggctggacaggcgcgctgcccattcgagtcgcgg
cagtccaacgttggcctcttcgctggtggggatttctactcggctaccatgacggatttc
ttggccagcgacgcgctgatctaccgcagcctgggagagagcagccccgtgctgcgcacc
gtgaaatacgactccaagtggctgcgagagcctcatttcctccatgccatagagtacggc
aactatgtgtacttcttcttgagcgagattgcagtggagtacaccgccctaggcaaggtg
gtgttctcgcgagtggcccgggtctgcaagaacgacaacggcggttccccgcgggttctc
gagcgctactggacctccttcttgaaggcgcggctcaactgctcagtgccgggcgactcc
ttcttctactttgacgtgctccagtccctgaccaacgtcatgcagatcaaccagaagccc
gccgtgctcggagtgttcaccacgcaagccaacagcatcaccggctctgcagtgtgtgtg
ttctacatggacgacattgagagggttttcaacggcaagttcaaggaacagcgcaacagt
gagtccgcctggacccccgtgcccgaggagatggtgcccaaacccaggcctggctcctgt
gctggcgatggcccagccgcatcctacaagtcctccacgaccttcccagatgacacattg
accttcatcaagtcctacccgctgatggacgaggctgtaccctcggtcaacgaccggcca
tgcttcacgcgcaccaccagcaggttcaagctgacccagttggccgtggacacctcggcc
gggccatataagaaccacacggtgctgttcctgggctcggaggacggccgcgtgctcaag
gtgctggccagcacgcacgccaacgcctccttcagcacgcaggtcctggaggacatcgac
gtttacaacccagctaagtgtaacatccgcggggaggaccggcgcgtgcttggcctggag
ctggacaaggaccaccatgccctcttcgtggccttctccagctgcgtggtgcgcgtgcca
ctcagccgctgcgcccactacggctcctgcaggacgagctgcctgtcctcacgagacccc
tactgcatctggctgaagatggggctgtgcgccaccatggcgcctggaatcaagcaaggg
tttgaccaggatgtggagagtggttacacgcagtatccagacagttgtcatgacgttttg
gccaccacgcggaagcagaacaccgtagtggactctgcttatggaaagaccacccccact
acaaccgccagcacaaccagtcaggcagcagtccttcccaaggtgcccggtgactcacag
aaaggtacagggcctgaggggcacccttcagtgggggaccagggctcacctgactctgag
gccatcagtgtggagggtgtgcgccgtcctcctgaggtggagaagaccaaccacagtgtc
cactacaccctcctcatcgcctgcgtgctcgtggcgttcgtcctgggcgcgttcctgtcc
ggcttcctggtctcttgctactgcaaccacaactcgagcaagaccaagaggctgcccaag
gacccggaggtgtccatccctcacgcgctctcgctccgcagcctggccaagctcaacggt
ctgctggagagtcagagcaaggaggacaagctggacgtgccgtcgcccaaagtctacaac
tcgttcttcggcaacgggaaagagcacccctcccggaggcaccacggaatggccgacctc
atccaccctcatcaccaccaccacggctccgagctgtctgggctgccgacacccgactcg
acgccggagctgcccatcaagagcatgaaggccttcaagaaccagtgggaaaagaaccag
aactgcaacaacgccaaggagcccaagccccacaacgtgcccggctccaggcccagctca
gggctgcagcagcaggtgttccccttctcacacgggctgtccaacggccaggccctgggt
ggctccatgcatctggaggagcgcaagatccacaacacggagcgcatgatgagccagcag
ccgtaccacggctacccgcacaaggtggtggacgtcacgtcgctggacgagctcttgaag
cacatccacgagatcaacgtgaccacagggggcatgggcgggggcggcaaggtcatgacc
tcgtccatgtcggcccacgctggccagatggccttcgccaaccgcgtccagccgcagatc
cccgaaacggagacggcgccgtactacagctcgtccacgctgccacgggacagcctgacg
cggcgtatggacgtgccgcccgacatgccactgcctccgccgtcgcagtccacgctggag
cgcctctcgcgccaccccggccaccggcactcgctcatcgccgcctccaagatggccgcc
gggggcggtggcgggatggtggcccgccagcacagcttcaaccaccagggcgggcgcccg
cttatgctcgcgcggatcaactctgccgggagcagcagcggcggtggcggcggctgcgag
gtgcgccacccactcatccccgggagctacctgatgcgccagcacagctacagcgagcag
cccgagtgccaccgtggcgtcaacgtgcgccggacggcgtcgctcaagcccgacgtgccc
cccaagccactcttcatccccgccacctcgcccgtcaaccagcagggcaagttcaactac
tga
DBGET
integrated database retrieval system
