Alosa sapidissima (American shad): 121723444
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Entry
121723444 CDS
T11137
Symbol
rfx4
Name
(RefSeq) transcription factor RFX4 isoform X1
KO
K09174
regulatory factor X 4
Organism
asad Alosa sapidissima (American shad)
Brite
KEGG Orthology (KO) [BR:
asad00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
asad03000
]
121723444 (rfx4)
Transcription factors [BR:
asad03000
]
Eukaryotic type
Other basic domains
RF-X
121723444 (rfx4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BCD_RFX
RFX_DNA_binding
Pox_D5
Motif
Other DBs
NCBI-GeneID:
121723444
NCBI-ProteinID:
XP_041965044
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All DBs
Position
11:complement(15129628..15148553)
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AA seq
734 aa
AA seq
DB search
MHCGLLEEPDMDSTESWIERCLNESESKRYSSHTSLGNMSNDENEEKENNRACKRHSTPA
TLQWLEENYEIAEGVCIPRSALYMHYLDFCEKHDSQPVNAASFGKIIRQQFPQLTTRRLG
TRGQSKYHYYGIAVKESSQYYDVMYSKKGAAWVNETGKKEVTKQTVAYSPRSKLGTLLPD
FPNVKDLNLPASLPEEKVSTFIMMYRTHCQRILDTVIRANFDEVQSFLLHFWQGMPPHML
PVLGSSIVVNIVGVCDSILYKAISGVLMPTVLQALPDSLTQVIRKFAKQLDEWLKIALHD
LPENLRNIKFELARRFSQVLKRQTSLNHLCQASRTVIHSADITFQMLEDWRNVDLNSITK
QTLYTMEDSREDQRRLIIQLYQEFDRLLEDQSPIEAYIEWLDSMVDRCVVKEAGKRPGSL
RRVAQQFLLMWSCFGTRVIRDMTLHSAPSFGSFHLIHLMFDDYVLYLLESLHCQERANEL
MRSMKGEASTADRVEDMMLTETTPSSPAAYSPAKSVLSVGVPALSSPTSAQSPEYTGVPA
TTGAVQSYTWSLTYTVTTSGGSPPEGGPQLSCMRSAPSVTPPTAGHRVPVYPHRDEHGYT
GSYNYSSYTNQHHHPIQSQYPSLPHEAGLPTPLHYPAYHRTPAQYPLNSPMARMEPCLMG
GTSRLHPSPVAPRWPDLPAANGCYSTPPMHSSRYGAGAEVYAPLAPRRTTDYEHAQHFPG
FAYINGEATTGWAK
NT seq
2205 nt
NT seq
+upstream
nt +downstream
nt
atgcattgtgggctgctggaggagccggatatggattccacagagagttggattgagaga
tgcctcaatgagagtgagagcaagcgctactccagccacacgtccctggggaatatgtcc
aatgatgagaatgaggagaaagagaacaacagagcgtgtaagcgtcactccacgccagcc
actctgcaatggctggaggagaactatgagattgcagaaggagtgtgcatccctcgcagc
gcactctacatgcactacctggacttctgcgagaagcacgactcccagccggtgaacgca
gccagctttggcaagatcataaggcaacagttccctcagctaaccacgcggagacttgga
accagaggccagtcaaagtaccactactacggcatcgccgtgaaggagagctcgcagtac
tacgatgtgatgtactccaagaagggcgcagcatgggtgaacgagacgggcaagaaggag
gtgaccaagcagacagtggcgtattcaccgcgctccaagcttgggacgctcctgccagac
tttccaaatgtcaaagacctaaatctgcctgcaagcctgccagaggagaaggtctccacg
tttattatgatgtaccgcacccactgccagcggatactggacacggtcatcagggccaac
tttgatgaggtccagagtttcctgctgcacttctggcagggaatgccacctcacatgctg
cccgtgctgggctcctccatcgtggtcaacattgtgggcgtgtgtgactccatcctctac
aaggccatctccggggtcctcatgcccactgtactacaggcactgccagacagtttgacg
caggtaattcggaaatttgccaaacagctggacgagtggctgaagatcgcattgcatgac
ttgccagagaacctgaggaacatcaaatttgaattggctcgaagattctcccaggttcta
aagcggcaaacgtctttaaaccacttatgtcaggcttcacggacggtcatccacagtgcg
gacatcacgttccagatgctggaggactggcgtaacgtggacctgaacagcatcaccaag
cagacactctacacgatggaggactcgcgagaggaccaacgcagactcatcatccagctt
tatcaagagtttgatcgcttgctggaagaccagtcgcccatcgaagcctacattgaatgg
ctggactccatggtggacagatgtgtagtgaaggaggccgggaagcggcctgggagtctg
aggagggtggcccagcagttcctgctcatgtggtcgtgttttgggacgcgcgtgatccgg
gacatgactcttcacagcgcacccagcttcggctcgtttcacctgatccacttgatgttt
gacgactacgtgctgtacctgctggaatcactgcactgccaagagcgcgccaacgagctg
atgaggtccatgaagggcgaggccagtacagccgatcgagttgaagacatgatgctgaca
gaaaccacaccctcgtcccctgccgcctactcgcccgccaaatcggtcctctcggtcgga
gtcccagccctcagctcgcccacctctgcccagtctccggaatataccggtgtgcccgct
accacaggtgctgttcagtcatatacctggtcccttacgtacacagtgactacgtcggga
ggctccccacctgaaggcggaccccagctctcctgcatgcgcagtgccccctccgtgacc
cctcccaccgccggccaccgcgtgccagtctacccacaccgggatgagcacggctacacg
gggagctacaactacagcagctacacaaaccagcaccatcacccgattcagagccagtac
cccagtctgccccatgaagcaggccttcctacacccctccactaccctgcctaccaccgc
acgcctgcacagtaccctctcaacagtccgatggcccgcatggagccctgcctgatgggc
ggcacgtcccggctgcacccgtcgcccgtggccccgcgctggcccgacctgccggccgcc
aacggctgctactccaccccgcccatgcactcgtcccgctatggcgccggcgccgaggtc
tacgcgccgctggccccgcgccgcaccaccgactacgagcacgcgcaacacttccccggc
ttcgcctacatcaacggcgaggccaccactggctgggccaagtag
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