Alosa sapidissima (American shad): 121723649
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Entry
121723649 CDS
T11137
Symbol
cftr
Name
(RefSeq) cystic fibrosis transmembrane conductance regulator
KO
K05031
cystic fibrosis transmembrane conductance regulator [EC:
5.6.1.6
]
Organism
asad Alosa sapidissima (American shad)
Pathway
asad02010
ABC transporters
asad04530
Tight junction
Brite
KEGG Orthology (KO) [BR:
asad00001
]
09130 Environmental Information Processing
09131 Membrane transport
02010 ABC transporters
121723649 (cftr)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04530 Tight junction
121723649 (cftr)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
asad02000
]
121723649 (cftr)
Enzymes [BR:
asad01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.1 Enzymes altering polypeptide conformation or assembly
5.6.1.6 channel-conductance-controlling ATPase
121723649 (cftr)
Transporters [BR:
asad02000
]
ABC transporters, eukaryotic type
ABCC (CFTR/MRP) subfamily
ABCC7 subgroup
121723649 (cftr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_membrane
CFTR_R
ABC_tran
AAA_21
SMC_N
RsgA_GTPase
AAA_29
MMR_HSR1
DUF87
AAA_16
FtsK_SpoIIIE
T2SSE
nSTAND1
Zeta_toxin
Motif
Other DBs
NCBI-GeneID:
121723649
NCBI-ProteinID:
XP_041965482
LinkDB
All DBs
Position
11:complement(26469140..26501061)
Genome browser
AA seq
1511 aa
AA seq
DB search
MQKSPVEDANWLSKYFFWWTYPIMRKGFTERLGPSDVYQVPSFDRADVLVDHLEREWDRE
VASGKKNPRLLFALARVRSFFWPFVICGILLYLGEASKTVQPQLLGRIIAQFDPFHAPER
AQGYFLALGLSLLFTARFLLLQPAVFGLHHLGMQIRIALFTLIYKKTLKLSSRVLDKIST
GELVSLMSAHLSKFDQSMGMAHFVWISPLQCILSVGMVWELIDVNGFCALAAISLLGIIQ
AGLSHKMGPHKAQRAKLTSKRLALTSDIMENIHSVKAYGWEEIMETIINNMRKKEVKFTQ
KIGSLRYFYSSAYFFSAIWIIVAAVVPHALSRGIILRRIFTTLSYCIALRITITRQLPAS
IQMWYDTVALLKKIEDFLSKEEYKVLEYNPTATGLKLNNVTASWDEGIGELFDKIRRENK
DKENGHMNGDAGLFFTNLYVTPVLRKINLNLEKGEMLALAGSTGSGKSSLLMTVLGELVP
SEGTIRHSGRISFSPQTAWIMPGTIRDNILFGLSYDEYRYKSVIKACQLEQDLAAMPEND
KTPLAEGGLNLSGGQKARVALARAVYKDADVYLLDAPFTHLDIATEKEIFERCVCKLMAS
KTRVIVTSKLEHLKRADKILLLHNGDCFFYGTFSELQSQRPDFSSLLLGMEGYDNIKAER
RTSILSDTLRRVSVDESASYRSERPSFRPPPPVYAEQREERRSSVLLNPLAAAARKLSFI
PSSSSVAGDEDVLVRRPPPDRKLSLMPEDELVDESFSGGDVYHNHGVHMAGQRRQSVLDF
ITNVGGGGGRRDPYRSSFRRKMSILPQGDLATEVDIYARRLSDDFNDVNDFDFSGDMDGE
HIEACFADQQIEDVFETTKWNTYVRYVSTNKNLIYVLIFILIVFAAEVALSVLGIYLITD
KVWREEHHWFSYNATHYPNMTQPQQFYPVIVTPTSIYYIMYIYVATSESVLAMGFFRGLP
LVHTMITISMKLHEKMLAAVLRAPMAVLNTMKTGRIMNRFTKDMATIDDMLPLLMFDLIQ
LLLIVIGCLLVVTILRPYIYLAATPLAIVFMLMRKYFLRTGQQLKQLETEARSPIFSHLI
ISMKGLWTIRAFGRQAYFEGQFQKALNTHTATWFLYLSTLRWFLFRADVIFTLFFTLAAW
IAVGTTKDPDVGEVGIIVVMAMLINGTFQWCVVTSIAVDGMMRSVDRVFKFIDLPSEEPK
TGGLGSSKGGSKDKDKDLVIENVDAWAYNAWPNHGQLDVQKLSVKYTEVEQTIIKDLSFS
VEGGQRMGLLGRTGSGKSTLFNGLLRLAHTDGEVLIDDLSWNNIPLKVWRRAFGVIPQKV
FIFTGSFRMNLDPYGRHSDEELWRVTEEVGLKSVIEQFPDKLDFQLEYGGHVLSYGHKQL
MCLARSILRRARILLLDEPSAHLDPITIKALKTTLRDSFSTCTILMSEHRMETLLECQSF
LLLDQSTGKTYDSMQKLLNETSHLKQAMSPAERLKIFPRRNSSMRVPQPKISAVTLTLEE
EAEDEIQDTRL
NT seq
4536 nt
NT seq
+upstream
nt +downstream
nt
atgcagaaatcacctgtggaagatgccaactggttgtccaaatatttcttctggtggaca
tacccgattatgagaaagggtttcacggagaggttaggtccttcagatgtgtatcaagtt
ccatcttttgacagagctgacgttctcgtcgatcacttagagagagaatgggacagagag
gttgcctctggaaagaagaatcccaggctcctttttgcattggctcgagttcgaagtttc
ttttggcctttcgtgatctgtggaatcctcttgtatttgggggaagcctcgaaaacggtc
caaccccagctcttggggcgcatcatcgctcagttcgaccctttccatgcccctgagcgg
gcgcagggctacttcctggccctgggcctcagtctcctcttcaccgctcgcttcctactc
ctccagccggccgtcttcggcctgcaccacctgggcatgcaaatcaggatagcactgttc
accctcatctacaagaagaccctgaagctctccagccgagtcctggacaagatcagcacg
ggggagctggtgagcctgatgtcagcacatctcagcaagtttgatcagagtatgggcatg
gcccactttgtgtggatatcgccgctgcagtgcattctcagcgttggcatggtgtgggag
ctcatagacgtcaatggcttctgtgccctggctgccatctctcttctaggcatcatccag
gccggtctctcgcacaagatgggccctcacaaggcacagagagccaaactgacgagtaaa
aggctcgccttaacttctgatattatggagaacattcactcagtgaaggcctatggatgg
gaggagatcatggaaactattatcaataacatgagaaagaaagaggtgaagttcacgcag
aagatcggctccctgcgttacttctacagctcggcgtactttttctcggccatctggatc
atcgtggcggccgttgtgcctcacgcgctgagccggggcatcatcctgcgccgcatcttt
accacgctgtcctactgcatcgccctgcgcatcaccatcacccgccagttgcccgcctcc
atccagatgtggtacgacactgtcgccctgctcaagaagattgaggattttctaagcaag
gaggagtacaaggtactggagtataacccgacagccactgggctgaagctcaacaatgtt
accgcttcatgggatgagggtattggggaactgttcgacaagattcggcgcgagaacaaa
gacaaggaaaatggccacatgaatggggatgctggactcttcttcacaaacctgtacgtc
acacccgtgctgaggaagatcaatctgaacctggagaagggggagatgctggcgctcgct
gggtccacaggctctgggaagagctctctgctgatgacagtattgggggagttggttcca
tcagagggaaccattcggcacagtggccggatctccttttcaccccagaccgcctggatc
atgccaggcaccatccgagacaacatcctgtttggcctgagctatgacgagtaccgctac
aagagcgtcatcaaggcctgccagctagagcaggacctggctgcaatgcctgagaatgac
aagactcccctggcagagggaggactaaacctcagtgggggccaaaaagccagagtggct
cttgccagagccgtgtataaggatgctgatgtctatttgctcgatgctcctttcacccac
ctggatattgccacagagaaagaaatctttgagagatgtgtgtgtaagctcatggcctcc
aaaactcgggtgatcgtcaccagcaagctggagcacctgaagcgcgccgacaagatcctg
ctgctgcacaacggcgactgcttcttctacggcaccttctccgagctgcagtcccagcgg
ccagacttcagctctctactgctgggcatggagggctacgacaacatcaaggccgagcgc
cggacctccatcctgtccgacacgctgcggcgcgtctccgtcgacgagtcggccagctac
cgctcggagcgcccctccttccggccacccccgccagtgtacgcggagcagcgggaggag
cggcgatcgtcggttctgctcaaccccctggcggccgccgcgcggaagctctccttcatc
ccctcgtccagctcggtggccggcgacgaggacgtgttggtgcggcggccgccgcccgac
aggaagctgtcgctcatgcctgaggacgagctggtggacgagtcgttctcaggcggcgac
gtctaccacaaccacggcgtgcacatggccggccagaggcggcagtcggtgctggacttc
atcaccaacgtcggaggcggtggcggacgccgcgacccctaccgctcctctttccgccgg
aagatgtccatcctgccccagggcgacctggccacggaggtggacatctacgcccgccgt
ctctccgatgacttcaatgacgtcaatgactttgactttagtggggacatggatggcgaa
cacatagaggcttgctttgcagatcagcaaattgaagatgtctttgaaacaaccaagtgg
aacacatatgtacgctacgtgtccaccaacaagaacctcatctatgtgcttatctttatt
ttaatagtttttgcagctgaggttgctctctctgtccttggcatttacttgatcacagat
aaggtgtggagggaggagcaccactggttcagctacaacgccacgcactaccccaacatg
acgcagccgcagcagttctaccctgtcatcgtcacccccaccagcatctactacatcatg
tacatctacgtggccacgtccgagagcgtgctggccatgggcttcttccgcggcctgccg
ctcgtccacaccatgatcaccatctccatgaagctccacgagaagatgctcgccgctgtg
ctgcgagcgcccatggctgtgctcaacaccatgaagacaggtcgcatcatgaaccgcttc
accaaggacatggccaccattgatgacatgcttcccctcctgatgtttgacctcatccag
cttctcctgatcgtgatcggttgcttgttggtggtgaccatcctgcggccctacatttac
ctcgcggcgacaccattggctatcgtcttcatgctcatgaggaagtacttcctgcggaca
ggccagcagctgaaacagctggagactgaggctcggagccctatcttctctcacctcatc
atatctatgaagggtctgtggacgatccgggcctttgggcgccaggcctactttgagggt
cagttccagaaggccctcaacacccacacggccacgtggttcctctacctgtccaccctg
cggtggttcttgttccgcgccgacgtcatcttcacacttttcttcaccttggccgcctgg
attgcagtcggaaccaccaaggacccagatgtgggtgaggttggcatcattgtggtcatg
gccatgcttatcaatggcactttccagtggtgcgtggtcactagcatcgctgttgatgga
atgatgcgttctgtggaccgagtcttcaagttcatcgacctgccatcggaggagcccaag
acgggtggtttgggctcaagcaaaggcggtagcaaggacaaagacaaggacctggtcatt
gagaacgtggacgcctgggcctacaacgcctggcccaaccacggccaactggacgtgcag
aagctgtcggtgaagtacacagaggttgaacagaccatcatcaaagacctctccttctct
gtggagggtggacaacggatgggccttctgggcaggacgggctctgggaagagtaccctc
ttcaacgggctgctgcggctggcccacactgacggcgaggtcctcatagatgacctgtcc
tggaacaacattcctctgaaggtctggaggagagcgttcggtgtcatcccacagaaagtg
tttatcttcaccggaagcttccgcatgaacctggacccatacggccggcacagcgatgag
gagctgtggagggtcactgaggaggtgggcctgaagtcagtgatcgagcagttccctgac
aagctggacttccagctggagtacggaggccatgtcctgagctatggccacaagcagctc
atgtgtctggcccgctccattctgaggagagcccgcatcctgctgctggacgagccgagc
gcccatctggaccccatcaccatcaaggccctgaagaccacgctgagggactccttctcc
acctgcaccatcctgatgtcggagcacagaatggagacgctgttggagtgccagtcgttc
ctgctgctggaccagagcacagggaagacgtacgactcgatgcagaagctgctgaacgag
acgagtcacctgaagcaggccatgagcccggcggagcgcctcaagatcttcccccgccgc
aactccagcatgcgcgtgccccagcccaagatcagcgccgtgaccctcaccctggaggag
gaggccgaggacgagatccaggacacacgcctgtga
DBGET
integrated database retrieval system
