Alosa sapidissima (American shad): 121723876
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Entry
121723876 CDS
T11137
Symbol
cnot4a
Name
(RefSeq) CCR4-NOT transcription complex subunit 4
KO
K10643
CCR4-NOT transcription complex subunit 4 [EC:
2.3.2.27
]
Organism
asad Alosa sapidissima (American shad)
Pathway
asad03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
asad00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
121723876 (cnot4a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
asad03000
]
121723876 (cnot4a)
03019 Messenger RNA biogenesis [BR:
asad03019
]
121723876 (cnot4a)
04121 Ubiquitin system [BR:
asad04121
]
121723876 (cnot4a)
Enzymes [BR:
asad01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
121723876 (cnot4a)
Transcription factors [BR:
asad03000
]
Eukaryotic type
Zinc finger
Cys3His zinc factors
121723876 (cnot4a)
Messenger RNA biogenesis [BR:
asad03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
121723876 (cnot4a)
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
121723876 (cnot4a)
Ubiquitin system [BR:
asad04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
121723876 (cnot4a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_4
RRM_1
zf-C3HC4_3
zf-C3HC4_2
zf-UDP
zf-RING_2
Nup35_RRM_2
DZR_2
RDD1
zf-CCCH_2
zf-C3HC4
Torus
Motif
Other DBs
NCBI-GeneID:
121723876
NCBI-ProteinID:
XP_041965983
LinkDB
All DBs
Position
11:complement(37067018..37084383)
Genome browser
AA seq
814 aa
AA seq
DB search
MSRSPDVKEDPMECPLCMEPLEIDDVNFFPCTCGYQICRFCWHRIRTDENGLCPACRKPY
PEDPAVYKPLSQEEIQRIKNEKKQKQNEKKQKVTENRKHLASVRVVQRNLVFVVGLSQRL
ADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYLRSEDALRAIQCVNNVV
VDGRTLKASLGTTKYCSYFLKSMQCPKPDCMYLHELGDEAASFTKEEMQAGKHQEYEQKL
LQDLYKSNPTFLQPSTCGSEKSKGKSSSSQRPGSTNKDGWPVLQGCGKAVNGLPTEHRKT
PPVLDCGSDSDHMTPDGPDSEELCPDQGISPFPSALDPSSSIDKPPESNSITENGEATPQ
TMLSSLVHRSSVHQLPNSDPPSPPPGLTKPSLVVPISVADLTARSPFEGAAAESRSLFSD
NSNFRHPNPLPSSLPSGPCSPQGGSDWPMTPEPQSLFTSDTIPVSSSTDWQAAFGFGSSA
KQQQQDDDLGFDPFDVTRKALADLIEKELSVQELPYSSSSSSSSSSALSPGLFHTHAHLY
RSSLAQRFGHLHQRAPLNGHLGPAPVQTTARHPWMGASTRNNLAHLNHTAVHSSFLDLNL
PVQEQHHPHNTGLGGIPISDSNGSIESLNVKEWQDGLRALLPNININFGGLPSSTSSSSS
SSSSSSSSVNHMGGPGGPPAGLSHSLSWDATASWMDPAIITGIPATAGNSLDCLQDDNPP
HWLKSLQALTEMEAPASTAPPPQQQQPLPQHHVGLLDTHLSSLHRSGWASYLPPPSSATP
SHYHSPPPGFQTAFRPPGQTATPDMLQTAAMDRH
NT seq
2445 nt
NT seq
+upstream
nt +downstream
nt
atgtctcgcagcccagacgtcaaagaggaccccatggagtgcccactgtgcatggagccc
ttggagatcgatgacgtcaactttttcccctgcacctgcggctaccagatctgccgcttc
tgctggcatcgcatccgcacagatgagaacggcctctgtcccgcttgcagaaagccctac
ccagaggacccagctgtttacaagcccctttcacaggaagagatccagaggataaagaac
gagaagaagcagaagcagaacgagaagaagcagaaggtcacggagaaccgcaagcacctg
gccagcgtgcgcgtggtccagcggaaccttgtgttcgtggttgggctgtctcaaaggctc
gccgacccagaggttcttaaaagaccagagtactttggcaagtttggcaaaatccataaa
gtagtcatcaataacagcacatcgtatgcaggttcacagggtccaagtgccagtgcgtat
gtcacgtacctccgctcagaggatgccctgagagcaatacagtgtgtcaacaatgttgtt
gtggatggtagaactctaaaggcttccttaggtacaacaaaatactgcagttactttttg
aaaagtatgcagtgtcccaagccagactgcatgtatttacatgaactgggagatgaagca
gctagttttacaaaagaggagatgcaggcgggaaagcaccaagaatatgaacaaaaacta
ctccaagatctctacaaatcaaatcccactttcctacaaccttcaacatgtggcagtgaa
aagtcgaaaggaaaatccagctcctcccaaagacctggcagcaccaacaaagatggctgg
cccgtgctacaaggctgtggtaaggcagtcaatggtctacccacagagcaccgtaaaacg
cctcccgtcttagactgtggctcagactccgaccacatgaccccagacgggccagactct
gaggagctgtgtccagatcagggcatctcgcctttcccctcagcattagacccctccagt
tccattgataaacctccagaatcaaacagtatcacagagaatggagaggctaccccacag
acaatgctctcgtctctcgttcaccgctcctcggttcatcagctccccaacagtgacccc
ccctcgcctccccctggcctgaccaagcccagtctagtggtgcccatcagtgtggccgat
ctcacagcacgctcgccgtttgagggggcggccgccgagtcgcgctcgctcttctccgac
aacagcaacttccggcaccccaaccctctcccgagcagcctgccctctggcccctgctca
cctcagggcgggtccgactggcccatgacccccgaaccacagagcctcttcacctcagac
accattcctgtgtcttcgtcaacggactggcaggcggccttcggcttcggctcctcagcc
aagcagcagcagcaggacgacgacctgggcttcgaccccttcgacgtgacgcgcaaggcc
ctggccgacctcattgagaaggagctgtccgtgcaggagcttccctactcttcctcctcc
tcctcctcctcctcctccgcactctcccccggcctgttccacacacacgcccacctgtac
cgctccagcctggcgcagcgcttcggccacctgcaccagcgcgccccgctcaacggccac
ctgggcccagcgcccgtccagaccactgcccgccacccctggatgggggcgtccacgcgc
aataacctggcacacttgaaccacacagctgtgcacagcagcttcttggacttgaatttg
ccagtgcaggagcagcatcaccctcacaacaccggcctcgggggcattcccatatcagac
agcaatggctctatagagagcctcaacgtcaaagagtggcaggatggcttgcgagcgctc
ctaccaaatatcaacatcaacttcgggggcctccccagctctacctcctcctcctcctcc
tcctcctcctcctcctcctccagcgtaaaccacatgggggggcccggcggccccccagca
gggctctcgcacagcctcagctgggacgcaacggccagctggatggacccggccatcatc
acagggatccccgccaccgcaggcaacagtctggactgtctccaggacgacaatccgcca
cactggctgaagtccctgcaggcgctaacagagatggaggccccggccagcacagccccc
ccccctcagcagcagcagcccctcccacagcaccacgtggggctgctggacacacacctg
tcctctctgcacagatccggctgggcgtcctacctgccccccccctccagcgccaccccc
agccactaccactcgcctccgcccggctttcagaccgccttcagaccccccggccagacc
gccacgccagacatgctacagaccgccgccatggaccgccactag
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