Alosa sapidissima (American shad): 121723908
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Entry
121723908 CDS
T11137
Symbol
lamb4
Name
(RefSeq) laminin subunit beta-4 isoform X1
KO
K06245
laminin, beta 4
Organism
asad Alosa sapidissima (American shad)
Pathway
asad04510
Focal adhesion
asad04512
ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:
asad00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
121723908 (lamb4)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
121723908 (lamb4)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EGF_laminin
Laminin_N
EGF_LMN_ATRN
LAMININ_IV_B
LAMB1
LAMB4
Laminin_I
HD_4
HWE_HK
F5_F8_type_C
DUF6415
Motif
Other DBs
NCBI-GeneID:
121723908
NCBI-ProteinID:
XP_041966050
LinkDB
All DBs
Position
11:complement(12522973..12541066)
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AA seq
1793 aa
AA seq
DB search
MLILGPLLFLLTCLATPLFAQEDECDDNSCHPQLGDLMLGRSAQLSATSTCGLAGPQNYC
ILGYLEDEQKCFLCDSRNPYNRYHNPNSHRIENVITTFEGSQRKMKWWQSENAVHHVSIK
LDLETVFQFSHLVLTFKSFRPAAMLVERSKDFGQTWKVFRYFAENCQLSFPGVSEGPATS
LDEVICDSRYSGPEPSTDGEVVLKALDPRFEINDPYDPKIQELITITNLRVNFTQLLTLG
DTLLGRRRRNPEDKYYYALYEMLVRGSCFCNGHASQCMPVDNARGDAFNERGMIHGRCVC
QHHTIGTNCERCEDFYNDAPWRPSESTDPHTCRKCNCYGHSERCHFDMARFVASGEVSGG
VCEDCRNNRVGAQCEQCQPYFYQDPSRSLEDPQACIPCDCDPAGSLDNGLCDALTGRCVC
KENVEGDRCDRCKFAFFGLRQDDPSGCQFCQCNLLGSITTPHACDQTTGQCFCQPFATGP
YCDQCVPGYWGLGNTVYSCLPCDCDTGGSTSSLCSSIDGQCPCRPNMVGLSCSSPAPGHF
LAPLDYYIYEAEDATPLGSGGSSLVNPPNPTGVPLPICEHYYREQGYDFKLSDGQYVLIR
RERRSSRQRRQDQPQYIEPDPAVQVRERRPGFPITWTGPGFRRAPQGAVLRFNINNIPAS
LQYHLLLHYEPESSDDWVASIRIVPSAPLDYGRCQNDPAADMELTLSGSKRVALLDTTVC
LEAGVPYSVDVTLRKQSSPDSQSSPYILMDSLGLVPQVDSPRTQDGSCSEATELQQYRCV
ELNAATPPDQCQGLISSISALIHNGAHHCSCNEEGAYRETCAKFGGQCECKPNVIGRCCD
SCARLTFGFGPNGCTPCDCESMGSTAELCDVTTGQCPCRAEVTGRHCDQCLPGHYGFPQC
SPCRCNGLADLCDPITGACLDCRDFSTGHNCDKCLPGYYGDPVFREPCEPCRCPDVQGSD
RFFALSCTKDDDTDSLTCDCLRGHAGARCDSCAPGFYGDLALPEAQCEECRCNDNTDPQD
ARACDGVTGVCLRCLHNTRGPSCESCKPGYYGDALVQDCKECSCDRRGTEVVMCPLDSPC
FCDEETGQCPCRTGVTGPLCNECEDGYWNLDGDAGCQPCRCDPDHSLNNVCDKVTGQCPC
LPEYGGQYCYECAENYFGNPDVQCLYCDCNMEGTLRPACDVDTGECRCRPGVTGILCDEC
APGHEATFPECPPCHPCSLLWAANITDVKKAAEKMQTLVPKPGDQKESSYSQRWQHILDL
QSQLESALNMTGNTQSELDAAEDLLSRIMELKDSIDPSAIVVDPTSLLNTEIDNIKLEFK
KLIDKLIDKTKEVPITDPKALNDTLEEIRQHYKDFIKDEERVKDAEDKVESSRDIRQKTK
LELAKCHTGGWDTLEKKVKALNVVKFNEEVCGAPGDAECSEAKCGGALCKNDANKSKCGG
PGCKGSLPLSHSAFETAENTEIDLIDLNHKLRESEIKINEARDMNEEIKGETVKMKKKIN
DSKNKFEKEKNGTKDLIKKVKDYLTDETASPEDIEEIAKAVLAIKLPKTPDEIQSMIKNI
RDLLSNFTNSQEDLELLEEKAKTAEKLLEQANNVKNRAKAIDVSDIRKTLQEAKLLQDKV
TDNLRDATNSTVQGADKVKETKGKLDTIEARLNPNVTKLLQDVEALKNKTEMNRAQAEEA
KAAADAALKNATGVSTDIKEVIELFEELKDKKSNQTANDEVKDRLKNITAEVESMAKDVA
DKMKKIEDLEKRLQAVIKDKEDKENDVAKLLEEATALRKVIAEKADNYIQCRS
NT seq
5382 nt
NT seq
+upstream
nt +downstream
nt
atgttgatcctgggccctttactgttcctgctcacgtgtttggccacccctctgttcgct
caggaggatgagtgtgatgacaactcgtgtcacccacagctgggagacttgatgctcggc
cgttctgcacagctttcggccacctccacctgcggactcgcaggacctcagaactactgc
atcttgggatacctggaggatgagcagaaatgcttcctctgcgactcaaggaatccttac
aatcgctatcacaatcccaatagtcatcgcatcgagaatgtgatcacaacctttgaaggg
tcacaacgcaagatgaagtggtggcagtctgaaaatgctgttcaccatgttagcattaaa
ctggacctggagactgtgttccagtttagccatcttgttctaacttttaagagcttccgc
cctgctgccatgctggtggagaggtctaaggattttggacagacctggaaggtgttccgc
tactttgctgagaactgtcaactctccttccctggagtgtccgagggaccagcaacaagt
ttagatgaggtcatctgtgatagccgctactctggcccagagccctccactgatggagag
gttgtgctcaaagccttggatcccaggtttgaaataaatgatccatatgaccctaaaata
caagagctcatcaccataactaacctgcgggtgaacttcacacaactcctcactttgggc
gatacactgctgggccgtcggcggaggaaccccgaggacaaatactactatgcgctgtat
gagatgttggtgcggggaagctgcttctgcaacggccatgccagccagtgcatgcctgtg
gataatgcccgaggggatgcgttcaacgagcgaggcatgattcacggccgatgtgtgtgt
cagcaccacacaattggtaccaactgtgagagatgtgaagacttttacaatgatgccccc
tggaggccgtctgagtctacagatcctcatacctgcagaaaatgcaactgttacggtcac
tcggagaggtgtcactttgacatggcgcggtttgtggccagcggggaggtaagtggcggt
gtgtgtgaagactgccgcaacaaccgcgtgggcgcccagtgtgagcagtgccagccctac
ttctaccaggaccccagcagatccctggaggaccctcaggcatgcataccatgtgattgt
gaccctgctggctcgctggacaatggcctctgtgatgccttaacgggacggtgcgtgtgt
aaggagaatgtggagggggacaggtgtgaccgctgtaaatttgccttcttcggcttacgc
caggatgacccctcaggctgccagttttgtcagtgtaacttacttggtagcatcacaaca
ccccatgcatgtgaccagaccacaggccagtgtttctgtcagccttttgccacaggaccg
tactgtgaccagtgtgtgccaggctattggggtctaggaaacactgtatacagctgtctg
ccttgtgactgtgacacaggtggatccaccagcagtttgtgctccagtattgatggtcag
tgtccttgccggcccaacatggtggggctcagctgcagtagtccggctcctggtcacttt
ctggccccgctggactactacatctatgaggctgaggacgccacaccgctgggaagcggt
ggttcatcactggtgaatccacccaaccccaccggtgtaccactgcccatctgtgagcat
tactaccgtgaacaaggttatgacttcaaactcagtgatggacagtatgtgctcatcaga
cgagagaggcggagcagtcgacaacgaagacaggaccagcctcagtatatagagcctgat
ccagctgtgcaggtcagagagcgccggcctggtttccccatcacatggactggacctggg
ttcaggagagctccacagggtgcagtcctccggttcaacattaacaacatcccagcctcc
ctgcagtaccaccttctgctccactatgagccagagtcctcagacgactgggtggccagt
atcagaattgtgccttcagcacctttggactacggaaggtgtcagaatgacccagcggca
gacatggagctaacactgtctggttccaaaagggtggctcttttggataccacagtgtgt
ttggaagctggtgtgccatactctgtggatgtcactctaagaaagcagtccagtccagac
tcccagtctagcccatacatcctgatggactcgctgggccttgtccctcaggtggactcc
ccccggactcaggacgggagctgctccgaggctactgagcttcagcagtaccgctgtgtg
gagctgaacgctgccacgccccctgaccagtgccagggtctcattagcagcatatctgcc
ctcatccacaacggtgcccatcactgcagctgtaatgaagagggggcctacagagaaacc
tgtgcaaaatttgggggtcagtgtgagtgtaagccaaacgtgattggccgctgctgcgac
tcttgtgcccgactgacctttggctttggaccaaatggatgcacaccctgtgactgtgag
tccatgggctcaacagctgagctctgtgatgtgaccactggccagtgtccatgccgtgcg
gaggtgactggcaggcattgtgaccagtgtctgcctggccattatggctttcctcagtgc
tcgccctgtcggtgcaatggactggctgacctttgtgaccccatcactggagcatgtttg
gactgccgggacttctccactggacacaattgtgacaagtgccttcctggttactacgga
gacccagtcttcagagagccctgtgagccgtgcagatgcccagatgtgcaggggagtgac
cgtttcttcgccctgtcctgcaccaaggacgacgacaccgacagcctcacctgtgactgc
ctcaggggccacgcaggagcccgatgtgacagctgtgcacctggcttttacggagacctg
gcgctgcctgaggcccagtgtgaggagtgccgctgcaacgacaacacggaccctcaggac
gccagggcctgtgacggggtgaccggtgtctgcctgcgctgcctacacaacacccgtggg
ccctcctgtgagagctgcaagccaggatactatggcgatgctctggtccaagactgcaaa
gaatgctcgtgtgatcggcgtggcacagaggtggtcatgtgcccactggacagcccgtgt
ttctgtgatgaggagactgggcagtgcccctgccgcacaggtgtgaccggccctctctgt
aatgagtgtgaggatggctactggaacctggatggtgatgcaggatgccagccttgcaga
tgtgaccctgatcactcactcaacaatgtctgtgacaaggtcacaggccagtgcccctgt
ctgcctgagtatgggggtcaatattgttacgagtgtgccgaaaactactttggaaacccc
gacgttcagtgcctttactgtgactgtaacatggagggcaccctgcggccggcctgtgac
gtggacacgggtgagtgccggtgccgccctggcgtgacgggcatcctgtgtgatgagtgt
gccccaggccatgaggccaccttccctgagtgcccaccttgccatccctgctctttgctt
tgggctgcaaacatcacagatgtcaagaaagctgcagagaagatgcaaaccctcgtccct
aagcctggtgaccaaaaggagtccagttacagtcagcgctggcaacacatactggacctg
cagtcccagctggagtcggctctgaacatgacaggaaatacccagtcagaactcgatgca
gccgaggatctcctctcccgtatcatggagctgaaagacagcatagatcccagtgccatt
gtcgttgacccaacatcacttctgaacacagaaatagataacatcaagctggagttcaag
aaacttatagataagttaatcgataaaacaaaggaagtcccaataacagatcctaaggct
ctgaatgacacactggaggagatcagacagcactataaagacttcatcaaagacgaggag
cgggtcaaggatgcagaggacaaggtggagtcgtccagggacatcaggcagaagaccaag
ctagagctggccaagtgtcacaccggaggctgggacacactagaaaagaaagtcaaagct
ttgaatgtggtcaagttcaatgaagaggtgtgcggggccccaggtgacgccgagtgctct
gaggccaagtgcggcggtgctctgtgtaagaatgacgctaacaagagcaagtgtggaggc
cctggctgcaagggcagccttcctctgagccacagcgccttcgagacagcagagaacacc
gagatcgacctcattgatctgaaccacaaactcagagaatcagaaatcaagattaatgag
gccagagacatgaatgaagaaattaaaggagaaacagtcaagatgaaaaagaagatcaat
gacagcaagaacaaatttgagaaggagaagaatggtaccaaggatctcatcaagaaagtg
aaggactacctcacagatgagacggcaagcccagaggacattgaggaaattgccaaagca
gtcttagctattaagctccccaagactccggatgagatccaaagcatgatcaaaaacatc
cgtgacctgctgtccaactttacaaactctcaagaggacctagagctcctggaggagaaa
gccaagacagcagagaaactacttgaacaagccaacaatgtcaaaaaccgagcaaaggca
atcgatgtgagtgacattcggaagacgttacaagaggctaaactcttacaggataaggtc
acggataacctaagggatgccacaaattccacagtccagggtgctgacaaagtgaaagag
actaaaggtaaactggacaccatagaggcacggttgaatccaaatgtgacaaagttgctg
caagatgttgaagcgttgaagaataaaactgagatgaaccgagcgcaggcagaggaggcc
aaagctgcagcggacgctgccctaaaaaatgccacaggtgtcagcacggatatcaaagag
gtcattgaactgtttgaggagctaaaggacaaaaaatcaaatcagactgctaatgacgag
gtaaaagatcgtctgaaaaatatcacagctgaagtggaaagtatggccaaagatgtggct
gacaagatgaagaaaattgaagacttggaaaaaagactccaagcagtcatcaaagataaa
gaagataaagagaatgatgttgctaagctgttggaggaggcaacagccctcagaaaagtg
attgccgaaaaagctgacaactacatacagtgccgctcctaa
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